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Conserved domains on  [gi|1676322855|dbj|BBD84071|]
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ribosomal protein L4, partial [Drosophila prolongata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00428 super family cl46848
60S ribosomal protein L4; Provisional
 1-70 9.85e-28

60S ribosomal protein L4; Provisional


The actual alignment was detected with superfamily member PTZ00428:

Pssm-ID: 185611  Cd Length: 381  Bit Score: 102.07  E-value: 9.85e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676322855   1 RKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 70
Cdd:PTZ00428  112 RKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGAFDDVNR 181
 
Name Accession Description Interval E-value
PTZ00428 PTZ00428
60S ribosomal protein L4; Provisional
 1-70 9.85e-28

60S ribosomal protein L4; Provisional


Pssm-ID: 185611  Cd Length: 381  Bit Score: 102.07  E-value: 9.85e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676322855   1 RKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 70
Cdd:PTZ00428  112 RKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGAFDDVNR 181
 
Name Accession Description Interval E-value
PTZ00428 PTZ00428
60S ribosomal protein L4; Provisional
 1-70 9.85e-28

60S ribosomal protein L4; Provisional


Pssm-ID: 185611  Cd Length: 381  Bit Score: 102.07  E-value: 9.85e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676322855   1 RKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 70
Cdd:PTZ00428  112 RKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGAFDDVNR 181
PLN00185 PLN00185
60S ribosomal protein L4-1; Provisional
 1-70 2.62e-24

60S ribosomal protein L4-1; Provisional


Pssm-ID: 177779  Cd Length: 405  Bit Score: 92.94  E-value: 2.62e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676322855   1 RKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 70
Cdd:PLN00185  117 RKVNVNQKRYAVVSALAASAVPSLVMARGHKIENVPEVPLVVSDSAESIEKTSAAIKILKQIGAYADVEK 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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