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Conserved domains on  [gi|1675105326|ref|WP_138619624|]
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MULTISPECIES: CZB domain-containing protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CheW super family cl43292
Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];
173-270 1.83e-04

Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG0835:

Pssm-ID: 440597  Cd Length: 151  Bit Score: 41.01  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675105326 173 LNRLFESAREQISLDYKpIIIFTTKDGVtphIGLLVDKVEDNINVKKEDIKPLEQLtsvgfdVDPQTKNMMRGLIKMKHK 252
Cdd:COG0835    62 LRALLGLPPTEDTERTR-IIVLEVGGRV---VGLLVDSVSGVVRIDPDDIEPPPEL------LSGGLAPFITGVAKLDDR 131

                          90
                  ....*....|....*...
gi 1675105326 253 HSLLLDPSAIFRPEHLMR 270
Cdd:COG0835   132 LILLLDLEKLLAEEELAA 149
 
Name Accession Description Interval E-value
CheW COG0835
Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];
173-270 1.83e-04

Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];


Pssm-ID: 440597  Cd Length: 151  Bit Score: 41.01  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675105326 173 LNRLFESAREQISLDYKpIIIFTTKDGVtphIGLLVDKVEDNINVKKEDIKPLEQLtsvgfdVDPQTKNMMRGLIKMKHK 252
Cdd:COG0835    62 LRALLGLPPTEDTERTR-IIVLEVGGRV---VGLLVDSVSGVVRIDPDDIEPPPEL------LSGGLAPFITGVAKLDDR 131

                          90
                  ....*....|....*...
gi 1675105326 253 HSLLLDPSAIFRPEHLMR 270
Cdd:COG0835   132 LILLLDLEKLLAEEELAA 149
 
Name Accession Description Interval E-value
CheW COG0835
Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];
173-270 1.83e-04

Chemotaxis signal transduction protein CheW [Signal transduction mechanisms];


Pssm-ID: 440597  Cd Length: 151  Bit Score: 41.01  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675105326 173 LNRLFESAREQISLDYKpIIIFTTKDGVtphIGLLVDKVEDNINVKKEDIKPLEQLtsvgfdVDPQTKNMMRGLIKMKHK 252
Cdd:COG0835    62 LRALLGLPPTEDTERTR-IIVLEVGGRV---VGLLVDSVSGVVRIDPDDIEPPPEL------LSGGLAPFITGVAKLDDR 131

                          90
                  ....*....|....*...
gi 1675105326 253 HSLLLDPSAIFRPEHLMR 270
Cdd:COG0835   132 LILLLDLEKLLAEEELAA 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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