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Conserved domains on  [gi|1671499620|gb|TMI46700|]
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50S ribosomal protein L39e [Candidatus Bathyarchaeota archaeon]

Protein Classification

RPL39 family protein( domain architecture ID 10005490)

RPL39 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-51 9.48e-14

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


:

Pssm-ID: 441770  Cd Length: 51  Bit Score: 57.98  E-value: 9.48e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1671499620  1 MARHKPSGKKKHLSHALRQAQPVPSWVVAKTEGKVRRTPKQRHWRKTKIKV 51
Cdd:COG2167    1 MARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKLKV 51
 
Name Accession Description Interval E-value
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-51 9.48e-14

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 57.98  E-value: 9.48e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1671499620  1 MARHKPSGKKKHLSHALRQAQPVPSWVVAKTEGKVRRTPKQRHWRKTKIKV 51
Cdd:COG2167    1 MARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKLKV 51
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 2-51 2.11e-12

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 54.61  E-value: 2.11e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1671499620  2 ARHKPSGKKKHLSHALRQAQPVPSWVVAKTEGKVRRTPKQRHWRKTKIKV 51
Cdd:PRK01242   1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKLKV 50
 
Name Accession Description Interval E-value
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-51 9.48e-14

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 57.98  E-value: 9.48e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1671499620  1 MARHKPSGKKKHLSHALRQAQPVPSWVVAKTEGKVRRTPKQRHWRKTKIKV 51
Cdd:COG2167    1 MARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKLKV 51
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 2-51 2.11e-12

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 54.61  E-value: 2.11e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1671499620  2 ARHKPSGKKKHLSHALRQAQPVPSWVVAKTEGKVRRTPKQRHWRKTKIKV 51
Cdd:PRK01242   1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKLKV 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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