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Conserved domains on  [gi|16588392|gb|AAL26788|]
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B lymphocyte activation-related protein BC-2048 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_22 super family cl25509
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 83-178 7.09e-09

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


The actual alignment was detected with superfamily member pfam02994:

Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 51.27  E-value: 7.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    83 PTLRIIGIPEEEEEPRS-LENIFGRKIEENFPSLARDLGIQIQEAQRTPGKFIAQRSSPRHIVIRLPKVKMKERILRTVS 161
Cdd:pfam02994   2 ANLRLICDPEEDRENAAeDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDVEFGKKEEKEKQDIAAE 81

                          90
                  ....*....|....*..
gi 16588392   162 QKRQETYKGKPIRLTAD 178
Cdd:pfam02994  82 EFGNLALKAKPIILEID 98
Tnp_22_dsRBD super family cl38762
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 181-206 2.91e-07

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


The actual alignment was detected with superfamily member pfam17490:

Pssm-ID: 407521  Cd Length: 65  Bit Score: 46.25  E-value: 2.91e-07
                          10        20
                  ....*....|....*....|....*.
gi 16588392   181 AEILQARRHWGPIFSLLKQNNYQPRI 206
Cdd:pfam17490   1 AETLQARREWGPIFNILKEKNFQPRI 26
Transposase_22 super family cl25509
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 33-127 1.79e-06

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


The actual alignment was detected with superfamily member pfam02994:

Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 44.73  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    33 SLSNRIQQAEERTSELEDKFFELTKSNKDKEERIRKIEQSLHEVWVHVKLPTLRIIGIPEEE-EEPRSLENIFGRKIEEN 111
Cdd:pfam02994   3 NLRLICDPEEDRENAAEDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDvEFGKKEEKEKQDIAAEE 82

                          90
                  ....*....|....*.
gi 16588392   112 FPSLARDLGIQIQEAQ 127
Cdd:pfam02994  83 FGNLALKAKPIILEID 98
 
Name Accession Description Interval E-value
Transposase_22 pfam02994
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 83-178 7.09e-09

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 51.27  E-value: 7.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    83 PTLRIIGIPEEEEEPRS-LENIFGRKIEENFPSLARDLGIQIQEAQRTPGKFIAQRSSPRHIVIRLPKVKMKERILRTVS 161
Cdd:pfam02994   2 ANLRLICDPEEDRENAAeDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDVEFGKKEEKEKQDIAAE 81

                          90
                  ....*....|....*..
gi 16588392   162 QKRQETYKGKPIRLTAD 178
Cdd:pfam02994  82 EFGNLALKAKPIILEID 98
Tnp_22_dsRBD pfam17490
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 181-206 2.91e-07

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


Pssm-ID: 407521  Cd Length: 65  Bit Score: 46.25  E-value: 2.91e-07
                          10        20
                  ....*....|....*....|....*.
gi 16588392   181 AEILQARRHWGPIFSLLKQNNYQPRI 206
Cdd:pfam17490   1 AETLQARREWGPIFNILKEKNFQPRI 26
Transposase_22 pfam02994
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 33-127 1.79e-06

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 44.73  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    33 SLSNRIQQAEERTSELEDKFFELTKSNKDKEERIRKIEQSLHEVWVHVKLPTLRIIGIPEEE-EEPRSLENIFGRKIEEN 111
Cdd:pfam02994   3 NLRLICDPEEDRENAAEDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDvEFGKKEEKEKQDIAAEE 82

                          90
                  ....*....|....*.
gi 16588392   112 FPSLARDLGIQIQEAQ 127
Cdd:pfam02994  83 FGNLALKAKPIILEID 98
 
Name Accession Description Interval E-value
Transposase_22 pfam02994
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 83-178 7.09e-09

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 51.27  E-value: 7.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    83 PTLRIIGIPEEEEEPRS-LENIFGRKIEENFPSLARDLGIQIQEAQRTPGKFIAQRSSPRHIVIRLPKVKMKERILRTVS 161
Cdd:pfam02994   2 ANLRLICDPEEDRENAAeDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDVEFGKKEEKEKQDIAAE 81

                          90
                  ....*....|....*..
gi 16588392   162 QKRQETYKGKPIRLTAD 178
Cdd:pfam02994  82 EFGNLALKAKPIILEID 98
Tnp_22_dsRBD pfam17490
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 181-206 2.91e-07

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


Pssm-ID: 407521  Cd Length: 65  Bit Score: 46.25  E-value: 2.91e-07
                          10        20
                  ....*....|....*....|....*.
gi 16588392   181 AEILQARRHWGPIFSLLKQNNYQPRI 206
Cdd:pfam17490   1 AETLQARREWGPIFNILKEKNFQPRI 26
Transposase_22 pfam02994
L1 transposable element RBD-like domain; This entry represents the RBD-like domain.
 33-127 1.79e-06

L1 transposable element RBD-like domain; This entry represents the RBD-like domain.


Pssm-ID: 460776 [Multi-domain]  Cd Length: 98  Bit Score: 44.73  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16588392    33 SLSNRIQQAEERTSELEDKFFELTKSNKDKEERIRKIEQSLHEVWVHVKLPTLRIIGIPEEE-EEPRSLENIFGRKIEEN 111
Cdd:pfam02994   3 NLRLICDPEEDRENAAEDEINEIDIEGEFFEKLAKQAEQQIQEIQDTPKRPNLRLAGPPEIDvEFGKKEEKEKQDIAAEE 82

                          90
                  ....*....|....*.
gi 16588392   112 FPSLARDLGIQIQEAQ 127
Cdd:pfam02994  83 FGNLALKAKPIILEID 98
Tnp_22_trimer pfam17489
L1 transposable element trimerization domain; This entry represents the trimerization domain.
 37-77 2.09e-04

L1 transposable element trimerization domain; This entry represents the trimerization domain.


Pssm-ID: 407520  Cd Length: 43  Bit Score: 37.85  E-value: 2.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 16588392    37 RIQQAEERTSELEDKFFELTKSNKDKEERIRKIEQSLHEVW 77
Cdd:pfam17489   1 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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