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Conserved domains on  [gi|1654725630|ref|WP_137419307|]
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MULTISPECIES: integrase core domain-containing protein, partial [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra5 super family cl34487
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-35 2.16e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2801:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 52.85  E-value: 2.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1654725630   1 ARKIINDWRQDYNECRPHSTLNYQTPSEFAAGWRK 35
Cdd:COG2801   273 AREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-35 2.16e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 52.85  E-value: 2.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1654725630   1 ARKIINDWRQDYNECRPHSTLNYQTPSEFAAGWRK 35
Cdd:COG2801   273 AREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS3 NF033516
IS3 family transposase;
1-30 4.27e-10

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 52.18  E-value: 4.27e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 1654725630   1 ARKIINDWRQDYNECRPHSTLNYQTPSEFA 30
Cdd:NF033516  340 ARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
rve_3 pfam13683
Integrase core domain;
1-26 8.80e-10

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 47.98  E-value: 8.80e-10
                         10        20
                 ....*....|....*....|....*.
gi 1654725630  1 ARKIINDWRQDYNECRPHSTLNYQTP 26
Cdd:pfam13683 42 ARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 7-28 1.02e-04

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 36.80  E-value: 1.02e-04
                          10        20
                  ....*....|....*....|..
gi 1654725630   7 DWRQDYNECRPHSTLNYQTPSE 28
Cdd:NF033577  260 EWLHHYNHHRPHSALGGKTPAE 281
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-35 2.16e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 52.85  E-value: 2.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1654725630   1 ARKIINDWRQDYNECRPHSTLNYQTPSEFAAGWRK 35
Cdd:COG2801   273 AREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS3 NF033516
IS3 family transposase;
1-30 4.27e-10

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 52.18  E-value: 4.27e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 1654725630   1 ARKIINDWRQDYNECRPHSTLNYQTPSEFA 30
Cdd:NF033516  340 ARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
rve_3 pfam13683
Integrase core domain;
1-26 8.80e-10

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 47.98  E-value: 8.80e-10
                         10        20
                 ....*....|....*....|....*.
gi 1654725630  1 ARKIINDWRQDYNECRPHSTLNYQTP 26
Cdd:pfam13683 42 ARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 7-28 1.02e-04

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 36.80  E-value: 1.02e-04
                          10        20
                  ....*....|....*....|..
gi 1654725630   7 DWRQDYNECRPHSTLNYQTPSE 28
Cdd:NF033577  260 EWLHHYNHHRPHSALGGKTPAE 281
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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