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Conserved domains on  [gi|1653972987|gb|QCQ84436|]
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L2, partial [Human papillomavirus 65]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Late_protein_L2 super family cl28153
Late Protein L2;
5-73 1.06e-20

Late Protein L2;


The actual alignment was detected with superfamily member pfam00513:

Pssm-ID: 332973  Cd Length: 514  Bit Score: 83.72  E-value: 1.06e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1653972987   5 RRTKRDSIPNLYAKCQLSGNCLPDVKNKVEADTLADRLLRWLGSVIYLGGLGIGTGRGSGGSSGYNPLG 73
Cdd:pfam00513   1 KRRKRASPQDLYPTCKQAGTCPPDVKNKVEQTTIADKILQYGSSGVFLGGLGIGTGRGSGGRTGYTPLG 69
 
Name Accession Description Interval E-value
Late_protein_L2 pfam00513
Late Protein L2;
5-73 1.06e-20

Late Protein L2;


Pssm-ID: 278914  Cd Length: 514  Bit Score: 83.72  E-value: 1.06e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1653972987   5 RRTKRDSIPNLYAKCQLSGNCLPDVKNKVEADTLADRLLRWLGSVIYLGGLGIGTGRGSGGSSGYNPLG 73
Cdd:pfam00513   1 KRRKRASPQDLYPTCKQAGTCPPDVKNKVEQTTIADKILQYGSSGVFLGGLGIGTGRGSGGRTGYTPLG 69
PHA02777 PHA02777
major capsid L1 protein; Provisional
 1-57 3.36e-08

major capsid L1 protein; Provisional


Pssm-ID: 165142  Cd Length: 555  Bit Score: 48.10  E-value: 3.36e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1653972987   1 MQASRRTKRDSIPNLYAKCQLS-GNCLPDVKNKVEADTLADRLLRWLGSVIYLGGLGI 57
Cdd:PHA02777    1 MLARQRIKRANPEQLYATCKATgGDCPPDIIKKIEGNTPADKILKWGSTGVFFGGLGI 58
 
Name Accession Description Interval E-value
Late_protein_L2 pfam00513
Late Protein L2;
5-73 1.06e-20

Late Protein L2;


Pssm-ID: 278914  Cd Length: 514  Bit Score: 83.72  E-value: 1.06e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1653972987   5 RRTKRDSIPNLYAKCQLSGNCLPDVKNKVEADTLADRLLRWLGSVIYLGGLGIGTGRGSGGSSGYNPLG 73
Cdd:pfam00513   1 KRRKRASPQDLYPTCKQAGTCPPDVKNKVEQTTIADKILQYGSSGVFLGGLGIGTGRGSGGRTGYTPLG 69
PHA02777 PHA02777
major capsid L1 protein; Provisional
 1-57 3.36e-08

major capsid L1 protein; Provisional


Pssm-ID: 165142  Cd Length: 555  Bit Score: 48.10  E-value: 3.36e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1653972987   1 MQASRRTKRDSIPNLYAKCQLS-GNCLPDVKNKVEADTLADRLLRWLGSVIYLGGLGI 57
Cdd:PHA02777    1 MLARQRIKRANPEQLYATCKATgGDCPPDIIKKIEGNTPADKILKWGSTGVFFGGLGI 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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