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Conserved domains on  [gi|1645986010|gb|QCP72477|]
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hypothetical protein FDZ78_07785 [Duncaniella sp. B8]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6452 pfam20050
Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. ...
 51-161 4.05e-36

Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes. Proteins in this family are typically between 159 and 189 amino acids in length. This proteins contain the conserved motifs PL and SxxCG.


:

Pssm-ID: 437882  Cd Length: 107  Bit Score: 121.11  E-value: 4.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645986010  51 SITIGGVGapSDTLLLTLDSRQQQLYLPFRSTSPSTSFYihYCQKALDYPELNDTLSFDYDAVPYFASEDCGAMYHYRVT 130
Cdd:pfam20050   1 TLTVTGLG--TDSILINRATSVSSFYLPLSYTADTTTFV--FRYDSLDGGTLTDTITFTYTNEPHFESVDCGAMYFHTIT 76

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1645986010 131 RYTYTTHLIDSVGMTDSLITNIDRETIRIFF 161
Cdd:pfam20050  77 TVRYTRHLIDSIVINNPEVTNDNTENLKIYF 107
 
Name Accession Description Interval E-value
DUF6452 pfam20050
Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. ...
 51-161 4.05e-36

Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes. Proteins in this family are typically between 159 and 189 amino acids in length. This proteins contain the conserved motifs PL and SxxCG.


Pssm-ID: 437882  Cd Length: 107  Bit Score: 121.11  E-value: 4.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645986010  51 SITIGGVGapSDTLLLTLDSRQQQLYLPFRSTSPSTSFYihYCQKALDYPELNDTLSFDYDAVPYFASEDCGAMYHYRVT 130
Cdd:pfam20050   1 TLTVTGLG--TDSILINRATSVSSFYLPLSYTADTTTFV--FRYDSLDGGTLTDTITFTYTNEPHFESVDCGAMYFHTIT 76

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1645986010 131 RYTYTTHLIDSVGMTDSLITNIDRETIRIFF 161
Cdd:pfam20050  77 TVRYTRHLIDSIVINNPEVTNDNTENLKIYF 107
 
Name Accession Description Interval E-value
DUF6452 pfam20050
Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. ...
 51-161 4.05e-36

Family of unknown function (DUF6452); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes. Proteins in this family are typically between 159 and 189 amino acids in length. This proteins contain the conserved motifs PL and SxxCG.


Pssm-ID: 437882  Cd Length: 107  Bit Score: 121.11  E-value: 4.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645986010  51 SITIGGVGapSDTLLLTLDSRQQQLYLPFRSTSPSTSFYihYCQKALDYPELNDTLSFDYDAVPYFASEDCGAMYHYRVT 130
Cdd:pfam20050   1 TLTVTGLG--TDSILINRATSVSSFYLPLSYTADTTTFV--FRYDSLDGGTLTDTITFTYTNEPHFESVDCGAMYFHTIT 76

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1645986010 131 RYTYTTHLIDSVGMTDSLITNIDRETIRIFF 161
Cdd:pfam20050  77 TVRYTRHLIDSIVINNPEVTNDNTENLKIYF 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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