NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1645985746|gb|QCP72213|]
View 

T9SS type A sorting domain-containing protein [Duncaniella sp. B8]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Por_Secre_tail super family cl46851
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 939-1003 1.55e-09

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


The actual alignment was detected with superfamily member pfam18962:

Pssm-ID: 481191 [Multi-domain]  Cd Length: 75  Bit Score: 55.31  E-value: 1.55e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1645985746  939 YPNPFTDYIMVQTPVATSA----SVYSLQGSLLISASLEAGQN--RIDTSALPSGLYLVRIGSETVKMIRK 1003
Cdd:pfam18962    2 YPNPAKDVLNISLKNSNSSnlniSIYDILGKLVKSNSKTNGNNtkTIDVSNLSSGIYFVKINSGNGSTTKK 72
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 854-906 3.73e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


:

Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.54  E-value: 3.73e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1645985746  854 EGESLSLKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATS 906
Cdd:pfam02368   14 VGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATS 66
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 700-936 1.74e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 48.53  E-value: 1.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  700 EDMTVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSVEVWSIKVEGIAFKDEVVEAIASTKGTRIISTALI 779
Cdd:COG5492    205 TDASTASAVVAAVTAVTSAGSLTSAASVTTAGDDGTGVVATTVTTTISTSSSTTLTVTGATSSASTLGSGSTTSTNTVTA 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  780 WTPAKPSNQNVTYELSNPDVVSLKNNRLYTIAGKAGETDVTVTTADGGYKATCHVIVRMALEKLAFEESAEELTEGESLS 859
Cdd:COG5492    285 GVGDTGVSVAVASSSAATTSAVVGTLSSSGGGGGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLT 364

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1645985746  860 LKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATSTKYSyISATRNVTVKAKDQSGIESVGIVGV 936
Cdd:COG5492    365 LTATVTPANATNKNVTWSSSDPSVATVDSNGLVTAVAAGTATITATTKDGG-KTATCTVTVTAAGSTGTVVVVSLAA 440
 
Name Accession Description Interval E-value
Por_Secre_tail pfam18962
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 939-1003 1.55e-09

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


Pssm-ID: 436869 [Multi-domain]  Cd Length: 75  Bit Score: 55.31  E-value: 1.55e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1645985746  939 YPNPFTDYIMVQTPVATSA----SVYSLQGSLLISASLEAGQN--RIDTSALPSGLYLVRIGSETVKMIRK 1003
Cdd:pfam18962    2 YPNPAKDVLNISLKNSNSSnlniSIYDILGKLVKSNSKTNGNNtkTIDVSNLSSGIYFVKINSGNGSTTKK 72
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 854-906 3.73e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.54  E-value: 3.73e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1645985746  854 EGESLSLKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATS 906
Cdd:pfam02368   14 VGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATS 66
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 938-1003 3.83e-07

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 48.17  E-value: 3.83e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1645985746  938 AYPNPFTDYIMVQTPVAT---SASVYSLQGSLLISASLEaGQNRIDTSALPSGLYLVRI----GSETVKMIRK 1003
Cdd:TIGR04183    1 IYPNPAKGTLIIILLSSSgkvKVEIYDLSGKLVKKTTLN-NSNSIDLSNLSSGVYIVKIttgnGTITKKIIKK 72
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 700-936 1.74e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 48.53  E-value: 1.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  700 EDMTVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSVEVWSIKVEGIAFKDEVVEAIASTKGTRIISTALI 779
Cdd:COG5492    205 TDASTASAVVAAVTAVTSAGSLTSAASVTTAGDDGTGVVATTVTTTISTSSSTTLTVTGATSSASTLGSGSTTSTNTVTA 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  780 WTPAKPSNQNVTYELSNPDVVSLKNNRLYTIAGKAGETDVTVTTADGGYKATCHVIVRMALEKLAFEESAEELTEGESLS 859
Cdd:COG5492    285 GVGDTGVSVAVASSSAATTSAVVGTLSSSGGGGGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLT 364

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1645985746  860 LKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATSTKYSyISATRNVTVKAKDQSGIESVGIVGV 936
Cdd:COG5492    365 LTATVTPANATNKNVTWSSSDPSVATVDSNGLVTAVAAGTATITATTKDGG-KTATCTVTVTAAGSTGTVVVVSLAA 440
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 701-745 1.00e-04

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 41.61  E-value: 1.00e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1645985746  701 DMTVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSV 745
Cdd:pfam02368   33 KVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
852-908 3.98e-03

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 37.38  E-value: 3.98e-03
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746   852 LTEGESLSLKPVYTPENT-DFKELIWVSTNPEIASVDE-NGL-VTALKEGTASIKATSTK 908
Cdd:smart00635   14 VKKGLTLQLTATVTPSSAgVTGKVTWTSSNPSVATVVNaSGLvVTAVAAGTATITATSGD 73
 
Name Accession Description Interval E-value
Por_Secre_tail pfam18962
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 939-1003 1.55e-09

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


Pssm-ID: 436869 [Multi-domain]  Cd Length: 75  Bit Score: 55.31  E-value: 1.55e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1645985746  939 YPNPFTDYIMVQTPVATSA----SVYSLQGSLLISASLEAGQN--RIDTSALPSGLYLVRIGSETVKMIRK 1003
Cdd:pfam18962    2 YPNPAKDVLNISLKNSNSSnlniSIYDILGKLVKSNSKTNGNNtkTIDVSNLSSGIYFVKINSGNGSTTKK 72
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 854-906 3.73e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.54  E-value: 3.73e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1645985746  854 EGESLSLKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATS 906
Cdd:pfam02368   14 VGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATS 66
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 938-1003 3.83e-07

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 48.17  E-value: 3.83e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1645985746  938 AYPNPFTDYIMVQTPVAT---SASVYSLQGSLLISASLEaGQNRIDTSALPSGLYLVRI----GSETVKMIRK 1003
Cdd:TIGR04183    1 IYPNPAKGTLIIILLSSSgkvKVEIYDLSGKLVKKTTLN-NSNSIDLSNLSSGVYIVKIttgnGTITKKIIKK 72
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 700-936 1.74e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 48.53  E-value: 1.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  700 EDMTVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSVEVWSIKVEGIAFKDEVVEAIASTKGTRIISTALI 779
Cdd:COG5492    205 TDASTASAVVAAVTAVTSAGSLTSAASVTTAGDDGTGVVATTVTTTISTSSSTTLTVTGATSSASTLGSGSTTSTNTVTA 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  780 WTPAKPSNQNVTYELSNPDVVSLKNNRLYTIAGKAGETDVTVTTADGGYKATCHVIVRMALEKLAFEESAEELTEGESLS 859
Cdd:COG5492    285 GVGDTGVSVAVASSSAATTSAVVGTLSSSGGGGGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLT 364

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1645985746  860 LKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATSTKYSyISATRNVTVKAKDQSGIESVGIVGV 936
Cdd:COG5492    365 LTATVTPANATNKNVTWSSSDPSVATVDSNGLVTAVAAGTATITATTKDGG-KTATCTVTVTAAGSTGTVVVVSLAA 440
TcfC pfam16967
E-set like domain; TcfC is a family of bacterial fimbrial proteins. These sit in the outer ...
 947-993 3.43e-05

E-set like domain; TcfC is a family of bacterial fimbrial proteins. These sit in the outer bacterial membrane surrounding the RcpA proteins of the fimbrial shaft. This family is from Gamma-proteobacteria. This domain represents an immunoglobulin like E-set domain.


Pssm-ID: 435681 [Multi-domain]  Cd Length: 68  Bit Score: 42.66  E-value: 3.43e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1645985746  947 IMVQTPVATSASVYSlQGSLLISASLEAGQNRIDTSALPSGLYLVRI 993
Cdd:pfam16967    5 LVVFLPRAGRVEIYR-DGQLISSQNVAAGNQEIDTSRLPSGSYLVEI 50
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 701-745 1.00e-04

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 41.61  E-value: 1.00e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1645985746  701 DMTVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSV 745
Cdd:pfam02368   33 KVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
852-908 3.98e-03

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 37.38  E-value: 3.98e-03
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746   852 LTEGESLSLKPVYTPENT-DFKELIWVSTNPEIASVDE-NGL-VTALKEGTASIKATSTK 908
Cdd:smart00635   14 VKKGLTLQLTATVTPSSAgVTGKVTWTSSNPSVATVVNaSGLvVTAVAAGTATITATSGD 73
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 703-928 4.52e-03

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 40.83  E-value: 4.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  703 TVTSSDKSIATVDKNGKVTAVADGNAVITYANADGTKRFTCSVEVWSIKVEGIAFKDEVVEAIASTKGTRIISTALIWTP 782
Cdd:COG5492    380 TWSSSDPSVATVDSNGLVTAVAAGTATITATTKDGGKTATCTVTVTAAGSTGTVVVVSLAATSAVSASVVLTPAGTVNAG 459

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1645985746  783 AKPSNQNVTYELSNPDVVSLKN---NRLYTIAGKAGETDVTVTTADGGYKATCHVIVRMALEKLAFEESAEELTEGESLS 859
Cdd:COG5492    460 ASTASLNVNATDGVSTTVGVANvvsAVTVTASVAEVATSVGGGATVTVTVSTAATVTVTVGVKSTGIAVAGSTGILAGIV 539

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1645985746  860 LKPVYTPENTDFKELIWVSTNPEIASVDENGLVTALKEGTASIKATSTKYSYISATRNVTVKAKDQSGI 928
Cdd:COG5492    540 LSGSAKGDVAGGATLVDAGTADVGGTTSTTTSVTDASVVSLTGSTSSTGVGVGGTTATGTAVAALVTGT 608
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 795-863 4.54e-03

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 40.62  E-value: 4.54e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1645985746  795 SNP---DVVSLKNNRLYTIAGKAGETDVTVTTADGGYKATCHVIVRMALEKLafEESAEELTEGESLSLKPV 863
Cdd:COG4964     64 GNPeiaDVVVLSPRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGL--RERLRRLLPGEGIRVRAV 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH