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Conserved domains on  [gi|164519177|ref|YP_001648888|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Xyrauchen texanus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 21-173 1.88e-79

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 233.11  E-value: 1.88e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGL 100
Cdd:MTH00138  21 SNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSWSVLGYVVGYLVGVVL 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519177 101 VGGMFWETWYEGSWLVIDNMKEFSMLRGDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00138 101 AAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 21-173 1.88e-79

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 233.11  E-value: 1.88e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGL 100
Cdd:MTH00138  21 SNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSWSVLGYVVGYLVGVVL 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519177 101 VGGMFWETWYEGSWLVIDNMKEFSMLRGDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00138 101 AAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
25-114 1.18e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.96  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177   25 PYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPEAWGDRSVIGYVLIYVLGVGLVGG 103
Cdd:pfam00499   9 PVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLL 88

                          90
                  ....*....|.
gi 164519177  104 MFWETWYEGSW 114
Cdd:pfam00499  89 VLLSASLTPAA 99
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 21-173 1.88e-79

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 233.11  E-value: 1.88e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGL 100
Cdd:MTH00138  21 SNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSWSVLGYVVGYLVGVVL 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519177 101 VGGMFWETWYEGSWLVIDNMKEFSMLRGDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00138 101 AAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 21-173 5.28e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 161.17  E-value: 5.28e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVgL 100
Cdd:MTH00065  21 SNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPEAWGSWSVLVYVLFYLLLL-I 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519177 101 VGGMFWETWYEGSWLVIDNMKEFSMLRGDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00065 100 VGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEVTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 21-173 1.28e-39

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 132.18  E-value: 1.28e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGL 100
Cdd:MTH00115  21 SNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEAWGDWGVVGYVVGFVLVVVV 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519177 101 VGGM-FWETWYEGSWLVIDNMKEFSMLRGDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00115 101 VGVVvGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLELVRGLSRGALRAF 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 21-173 1.16e-29

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 106.61  E-value: 1.16e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGL 100
Cdd:MTH00214  21 SSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESWGGWSVLLFFLFYLLGLGF 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519177 101 VGGMFWETWYEGSWLVIDNMKEFSMlrgdtSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
Cdd:MTH00214 101 VGFYFYGGWEMLSWMGVDEANNLDL-----SGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRGLSRGALRVV 168
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 21-149 4.25e-24

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 92.56  E-value: 4.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  21 SNPAPYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVI-----------G 89
Cdd:MTH00109  22 SKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWVSNKVVlgalllgllmeL 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  90 YVLIYVLGVGLVGGMFwETWYEGSWLVIDNmKEFSMLRGDTSGVAVMYSSGGGMLVICAW 149
Cdd:MTH00109 102 LLVLYVLKDDEVEVVF-NFNGLGDWVIYDT-GGSGFFSEDAMGVAALYSYGTWLVVVTGW 159
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 25-172 4.92e-16

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 71.09  E-value: 4.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  25 PYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVIGYVLIYVLGVGLVGGM 104
Cdd:MTH00045  23 PYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLVLSLLLSLWVFISFDN 102

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 164519177 105 FWETWYEGSWLVIDNmkefsmlrgDTSGVAVMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRA 172
Cdd:MTH00045 103 FLELSNNNWSLVSLS---------DLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
25-114 1.18e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.96  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177   25 PYFAAFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPEAWGDRSVIGYVLIYVLGVGLVGG 103
Cdd:pfam00499   9 PVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLL 88

                          90
                  ....*....|.
gi 164519177  104 MFWETWYEGSW 114
Cdd:pfam00499  89 VLLSASLTPAA 99
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 29-139 4.98e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 44.11  E-value: 4.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519177  29 AFGLVVAAGVGCGVLAGHGGSFLSLVLFLIYLGGMLVVFAYSAALAaePFPEAWGDRSVIGYVLIYVLGVGLVggMFWET 108
Cdd:MTH00152  27 GLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS--PNPLFGSNFKFVFFSLTLFGFLGLF--FFFLY 102

                         90       100       110
                 ....*....|....*....|....*....|.
gi 164519177 109 WYEGSWLVIDNMKEFSMLRGDTSGVAVMYSS 139
Cdd:MTH00152 103 LYSSGGLSLSSLFDGSSGSLSFGGGLYSSSG 133
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 9.30e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 35.17  E-value: 9.30e-03
                         10        20
                 ....*....|....*....|....*.
gi 164519177  49 SFLSLVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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