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Conserved domains on  [gi|1635255148|gb|QCO70351|]
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cytochrome b, partial (mitochondrion) [Euplectes hordeaceus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSyKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00119  283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00119  363 LLILFPL 369
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSyKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00119  283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00119  363 LLILFPL 369
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 1.83e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.19  E-value: 1.83e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWNVG 75
Cdd:COG1290    51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  76 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 154
Cdd:COG1290   128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 155 HLTFLHDTGSNNPLGI----PSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNllGDPENFTPANPLVTPPHIKPE 229
Cdd:COG1290   208 HLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTvKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 230 WYFLFAYAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVehPFII 307
Cdd:COG1290   286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATL 363

                         330
                  ....*....|....*....
gi 1635255148 308 IGQLASIAYFTIILILFPL 326
Cdd:COG1290   364 LGSINTVTYFAFFLIVLPI 382
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 5.27e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.19  E-value: 5.27e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGVIL 78
Cdd:cd00284    34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVIL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:cd00284   114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                  ....*..
gi 1635255148 159 LHDTGSN 165
Cdd:cd00284   194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 3.94e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 213.78  E-value: 3.94e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 1635255148 159 LHDTG 163
Cdd:pfam00033 185 LHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 194-283 1.25e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.82  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 194 FSLLASLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 272
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 1635255148 273 MTFRPISQILF 283
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSyKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00119  283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00119  363 LLILFPL 369
CYTB MTH00131
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 622.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00131   42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00131  122 LVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLH 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00131  202 ETGSNNPLGLNSDADKISFHPYFSyKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAIL 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00131  282 RSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSL 361


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00131  362 FLVLMPL 368
CYTB MTH00100
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00100   42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00100  122 TVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLH 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00100  202 ETGSNNPSGIPSDSDKIPFHPYYTiKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAIL 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00100  282 RSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLI 361


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00100  362 ILILMPI 368
CYTB MTH00074
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 595.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00074   43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00074  123 LVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00074  203 ETGSNNPTGLNSNPDKVPFHPYFSyKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00074  283 RSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLL 362


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00074  363 FIIIIPL 369
CYTB MTH00191
cytochrome b; Provisional
 1-326 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 585.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00191   39 IIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00191  119 LSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLH 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00191  199 ETGSNNPLGLNSDSDKIPFHPYFSyKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAIL 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00191  279 RSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFL 358


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00191  359 FLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 569.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00156   32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00156  112 LVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLH 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00156  192 QTGSNNPLGLNSNIDKIPFHPYFTfKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAIL 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00156  272 RSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLY 351


                  ....*
gi 1635255148 320 ILILF 324
Cdd:MTH00156  352 FIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-323 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 554.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00145   43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00145  123 LSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00145  203 ETGSNNPLGLDSDGDKVPFHPYYTiKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00145  283 RSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF 362


                  ....
gi 1635255148 320 ILIL 323
Cdd:MTH00145  363 FLIL 366
CYTB MTH00034
cytochrome b; Validated
 1-326 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 549.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00034   42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00034  122 LTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLH 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00034  202 QTGSNNPTGLNSNYDKVPFHTYFTtKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAIL 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00034  282 RSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSL 361


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00034  362 FLFFFPL 368
CYTB MTH00016
cytochrome b; Validated
 1-323 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 520.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00016   43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00016  123 LTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00016  203 QTGSNNPLGVNSNSDKVPFHPYYTsKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00016  283 RSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFY 362


                  ....
gi 1635255148 320 ILIL 323
Cdd:MTH00016  363 FMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-326 2.03e-167

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 470.72  E-value: 2.03e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00022   41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00022  121 LTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLH 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00022  201 VDGSNNPIGLNSSVDKVSFHVYYTsKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAIL 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00022  281 RSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFY 360


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00022  361 FLVLIPL 367
CYTB MTH00053
cytochrome b; Provisional
 1-326 1.57e-164

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 463.41  E-value: 1.57e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00053   43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00053  123 LMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00053  203 EDGSNNPIGVRSDIDKIPFHYYYVlKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00053  283 RSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAY 362


                  ....*..
gi 1635255148 320 ILILFPL 326
Cdd:MTH00053  363 FLILMPL 369
CYTB MTH00224
cytochrome b; Provisional
 1-322 7.77e-155

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 438.59  E-value: 7.77e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00224   43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFI 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00224  123 LTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLH 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00224  203 QTGSNNPIGINADSARIPFHPYYSiKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAIL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00224  283 RSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY 362


                  ...
gi 1635255148 320 ILI 322
Cdd:MTH00224  363 FII 365
CYTB MTH00033
cytochrome b; Provisional
 3-326 1.12e-126

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 367.34  E-value: 1.12e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   3 QIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLLAL 82
Cdd:MTH00033   41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  83 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHDT 162
Cdd:MTH00033  121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 163 GSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00033  201 GSNEPLGLVGLSDRTAFHVYFTiKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPV-EHPFIIIGQLASIAYFT 318
Cdd:MTH00033  281 RSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFG 360


                  ....*...
gi 1635255148 319 IILILFPL 326
Cdd:MTH00033  361 YFLVLVPL 368
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 1.83e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.19  E-value: 1.83e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWNVG 75
Cdd:COG1290    51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  76 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 154
Cdd:COG1290   128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 155 HLTFLHDTGSNNPLGI----PSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNllGDPENFTPANPLVTPPHIKPE 229
Cdd:COG1290   208 HLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTvKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 230 WYFLFAYAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTWVGSQPVehPFII 307
Cdd:COG1290   286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATL 363

                         330
                  ....*....|....*....
gi 1635255148 308 IGQLASIAYFTIILILFPL 326
Cdd:COG1290   364 LGSINTVTYFAFFLIVLPI 382
CYTB MTH00086
cytochrome b; Provisional
 1-324 3.69e-109

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 321.89  E-value: 3.69e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00086   31 VFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00086  111 LVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLH 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSDCDKIPFHPYY-TKDILGFaLMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00086  191 STGSTSSLYCHGDYDKICFGPEYwNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAIL 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 240 RSIPNKLGGVLALAASILVLFLVPLLHTSklrSMTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAYFTI 319
Cdd:MTH00086  270 RAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFL 346


                  ....*
gi 1635255148 320 ILILF 324
Cdd:MTH00086  347 ILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-324 4.63e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 270.32  E-value: 4.63e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLL 80
Cdd:MTH00046   33 VIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  81 ALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00046  113 LVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLH 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 161 DTGSNNPLGIPSD-CDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 238
Cdd:MTH00046  193 KSGSSNPLFSSNGySDVVYFHSYFTvKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAM 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 239 LRSIPNKLGGvLALAASILVLFLVPLLHTSKLRSMtfrpISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLASIAyft 318
Cdd:MTH00046  273 LRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL--- 344


                  ....*.
gi 1635255148 319 IILILF 324
Cdd:MTH00046  345 MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 5.27e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.19  E-value: 5.27e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGVIL 78
Cdd:cd00284    34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVIL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:cd00284   114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                  ....*..
gi 1635255148 159 LHDTGSN 165
Cdd:cd00284   194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 3.94e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 213.78  E-value: 3.94e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 1635255148 159 LHDTG 163
Cdd:pfam00033 185 LHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 166-312 3.42e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 176.68  E-value: 3.42e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 166 NPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 244
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWpKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1635255148 245 KLGGVLALAASILVLFLVPLLHTSKLRSmTFRPISQILFWSLVADILLLTWVGSQPVEHPFIIIGQLA 312
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
216-316 2.41e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 159.95  E-value: 2.41e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPISQILFWSLVADILLLTW 295
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1635255148 296 VGSQPVEHPFIIIGQLASIAY 316
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
47-211 4.19e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 146.23  E-value: 4.19e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  47 SFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 124
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 125 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYT-KDILGFALMFSLLASLAL 202
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAvKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1635255148 203 FSPNLLGDP 211
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-168 3.31e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.82  E-value: 3.31e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVIL 78
Cdd:PRK03735   53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLT 157
Cdd:PRK03735  133 FFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212

                         170
                  ....*....|.
gi 1635255148 158 FLHDTGSNNPL 168
Cdd:PRK03735  213 MIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-168 3.37e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.05  E-value: 3.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148   1 ITQIVTGLLLAMHYTADTSLAFSSVVHVCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVIL 78
Cdd:CHL00070   45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148  79 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLT 157
Cdd:CHL00070  125 AVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFL 204

                         170
                  ....*....|.
gi 1635255148 158 FLHDTGSNNPL 168
Cdd:CHL00070  205 MIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 187-283 1.10e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 67.72  E-value: 1.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 187 ILGfalMFSLLASLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPLL- 265
Cdd:CHL00058   44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90
                  ....*....|....*...
gi 1635255148 266 HTSKLRSMTFRPISQILF 283
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 194-283 1.25e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.82  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 194 FSLLASLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 272
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 1635255148 273 MTFRPISQILF 283
Cdd:TIGR01156 123 PFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 194-283 1.39e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255148 194 FSLLASLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 272
Cdd:COG5679    49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                          90
                  ....*....|.
gi 1635255148 273 MTFRPISQILF 283
Cdd:COG5679   124 PFRRPVATAVF 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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