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Conserved domains on  [gi|1635255074|gb|QCO70314|]
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cytochrome b, partial (mitochondrion) [Cyanolanius comorensis]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-330 1.65e-151

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.65e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00119   39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00119  119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00119  199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKdLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00119  279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00119  359 YFTILLILFPL 369
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-330 1.65e-151

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.65e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00119   39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00119  119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00119  199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKdLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00119  279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00119  359 YFTILLILFPL 369
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-169 1.79e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.04  E-value: 1.79e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLN--KETWNI 78
Cdd:cd00284    30 GTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVI 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLV 158
Cdd:cd00284   110 GVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVIL 189

                         170
                  ....*....|.
gi 1635255074 159 HLTFLHETGSN 169
Cdd:cd00284   190 HLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-187 1.40e-76

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 239.69  E-value: 1.40e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   2 ICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSY-----LNketW 76
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  77 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGL 155
Cdd:COG1290   125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1635255074 156 TLVHLTFLHETGSNNPLGI----PSDCDK*PFHPYY 187
Cdd:COG1290   205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYY 240
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-167 6.98e-68

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.70  E-value: 6.98e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLNKETWNI 78
Cdd:pfam00033  21 GLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLV 158
Cdd:pfam00033 101 GVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLL 180


                  ....*....
gi 1635255074 159 HLTFLHETG 167
Cdd:pfam00033 181 HLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-330 1.65e-151

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.65e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00119   39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00119  119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00119  199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKdLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00119  279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00119  359 YFTILLILFPL 369
CYTB MTH00100
cytochrome b; Provisional
 1-330 7.55e-137

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 393.23  E-value: 7.55e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00100   38 GICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGI 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00100  118 ILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00100  198 LFLHETGSNNPSGIPSDSDKIPFHPYYTIKdILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFA 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00100  278 YAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASIL 357

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00100  358 YFLIILILMPI 368
CYTB MTH00131
cytochrome b; Provisional
 1-330 5.40e-135

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 388.63  E-value: 5.40e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00131   38 GLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGV 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00131  118 VLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00131  198 LFLHETGSNNPLGLNSDADKISFHPYFSYKdLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFA 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00131  278 YAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVL 357

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00131  358 YFSLFLVLMPL 368
CYTB MTH00074
cytochrome b; Provisional
 1-330 3.17e-129

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 374.02  E-value: 3.17e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00074   39 GVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00074  119 ILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00074  199 LFLHETGSNNPTGLNSNPDKVPFHPYFSYKdLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00074  279 YAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASIL 358

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00074  359 YFLLFIIIIPL 369
CYTB MTH00191
cytochrome b; Provisional
 1-330 1.42e-127

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 369.24  E-value: 1.42e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00191   35 GLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGV 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00191  115 ILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHL 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00191  195 LFLHETGSNNPLGLNSDSDKIPFHPYFSYKdILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFA 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00191  275 YAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFL 354

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00191  355 YFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-187 7.67e-125

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 361.79  E-value: 7.67e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00156   28 GLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00156  108 IILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHL 187

                         170       180
                  ....*....|....*....|....*..
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY 187
Cdd:MTH00156  188 LFLHQTGSNNPLGLNSNIDKIPFHPYF 214
CYTB MTH00034
cytochrome b; Validated
 1-330 5.70e-120

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 350.16  E-value: 5.70e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00034   38 GLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGV 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00034  118 ILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00034  198 LFLHQTGSNNPTGLNSNYDKVPFHTYFTTKdLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFA 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00034  278 YAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVL 357

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00034  358 YFSLFLFFFPL 368
CYTB MTH00145
cytochrome b; Provisional
 1-187 8.36e-118

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 344.58  E-value: 8.36e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00145   39 GLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00145  119 TLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHL 198

                         170       180
                  ....*....|....*....|....*..
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY 187
Cdd:MTH00145  199 LFLHETGSNNPLGLDSDGDKVPFHPYY 225
CYTB MTH00016
cytochrome b; Validated
 1-330 5.14e-116

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 340.12  E-value: 5.14e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00016   39 GLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00016  119 ILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00016  199 LFLHQTGSNNPLGVNSNSDKVPFHPYYTSKdIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00016  279 YAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVF 358

                         330
                  ....*....|.
gi 1635255074 320 YFTiILVLFPI 330
Cdd:MTH00016  359 YFF-YFMINPL 368
CYTB MTH00224
cytochrome b; Provisional
 1-326 1.95e-98

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 295.68  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00224   39 GLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00224  119 ILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHI 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00224  199 MFLHQTGSNNPIGINADSARIPFHPYYSIKdALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWM 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00224  279 YAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTIL 358


                  ....*..
gi 1635255074 320 YFTIILV 326
Cdd:MTH00224  359 YFSYFII 365
CYTB MTH00053
cytochrome b; Provisional
 1-330 3.48e-97

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 292.38  E-value: 3.48e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00053   39 GFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00053  119 LIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00053  199 IALHEDGSNNPIGVRSDIDKIPFHYYYVLKdLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFA 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00053  279 YAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIF 358

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00053  359 YFAYFLILMPL 369
CYTB MTH00022
cytochrome b; Validated
 1-330 6.71e-96

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 288.91  E-value: 6.71e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00022   37 GLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGV 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00022  117 VIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY***-************************************************* 239
Cdd:MTH00022  197 IYLHVDGSNNPIGLNSSVDKVSFHVYYTSKdWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFA 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 240 ******************************************LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFT 319
Cdd:MTH00022  277 YAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFF 356

                         330
                  ....*....|.
gi 1635255074 320 YFTIILVLFPI 330
Cdd:MTH00022  357 YFFYFLVLIPL 367
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-169 1.79e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.04  E-value: 1.79e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLN--KETWNI 78
Cdd:cd00284    30 GTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVI 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLV 158
Cdd:cd00284   110 GVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVIL 189

                         170
                  ....*....|.
gi 1635255074 159 HLTFLHETGSN 169
Cdd:cd00284   190 HLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-187 1.40e-76

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 239.69  E-value: 1.40e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   2 ICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSY-----LNketW 76
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  77 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGL 155
Cdd:COG1290   125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1635255074 156 TLVHLTFLHETGSNNPLGI----PSDCDK*PFHPYY 187
Cdd:COG1290   205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYY 240
CYTB MTH00033
cytochrome b; Provisional
 2-330 4.19e-72

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 228.28  E-value: 4.19e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   2 ICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGVI 81
Cdd:MTH00033   36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  82 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 161
Cdd:MTH00033  116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLL 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 162 FLHETGSNNPLGIPSDCDK*PFHPYY*****************************---********************** 238
Cdd:MTH00033  196 TLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPRIETLLQdpeNFIQANPLVTPVHIQPEWYFLF 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 239 *******************************************LSQILFWTLVTNLLILTWVGSQPV-EHPFIIIGQVAS 317
Cdd:MTH00033  276 AYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIAT 355

                         330
                  ....*....|...
gi 1635255074 318 FTYFTIILVLFPI 330
Cdd:MTH00033  356 IFYFGYFLVLVPL 368
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-167 6.98e-68

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.70  E-value: 6.98e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLNKETWNI 78
Cdd:pfam00033  21 GLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLV 158
Cdd:pfam00033 101 GVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLL 180


                  ....*....
gi 1635255074 159 HLTFLHETG 167
Cdd:pfam00033 181 HLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 1-187 5.46e-65

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 209.03  E-value: 5.46e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00086   27 GMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00086  107 TIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHL 186

                         170       180
                  ....*....|....*....|....*..
gi 1635255074 161 TFLHETGSNNPLGIPSDCDK*PFHPYY 187
Cdd:MTH00086  187 IFLHSTGSTSSLYCHGDYDKICFGPEY 213
CYTB MTH00046
cytochrome b; Validated
 1-187 2.47e-50

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 170.93  E-value: 2.47e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   1 GICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGV 80
Cdd:MTH00046   29 SVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGF 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 160
Cdd:MTH00046  109 ILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHL 188

                         170       180
                  ....*....|....*....|....*...
gi 1635255074 161 TFLHETGSNNPLGIPSD-CDK*PFHPYY 187
Cdd:MTH00046  189 FYLHKSGSSNPLFSSNGySDVVYFHSYF 216
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
51-187 7.09e-37

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 130.05  E-value: 7.09e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  51 SFFFICIYLHIGRGFYYGSYLNKE--TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 128
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074 129 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPSDCDK*PFHPYY 187
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVF 140
PRK03735 PRK03735
cytochrome b6; Provisional
 2-172 6.05e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 126.75  E-value: 6.05e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   2 ICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKE--TWNIG 79
Cdd:PRK03735   50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  80 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 158
Cdd:PRK03735  130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                         170
                  ....*....|....
gi 1635255074 159 HLTFLHETGSNNPL 172
Cdd:PRK03735  210 HFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 2-172 9.30e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 9.30e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074   2 ICLVTQIVTGLLLAMHYTADTNLAFSSVAHMCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKE--TWNIG 79
Cdd:CHL00070   42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255074  80 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 158
Cdd:CHL00070  122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLM 201

                         170
                  ....*....|....
gi 1635255074 159 HLTFLHETGSNNPL 172
Cdd:CHL00070  202 HFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
282-320 1.26e-08

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 51.71  E-value: 1.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1635255074 282 LSQILFWTLVTNLLILTWVGSQPVEHPFIIIGQVASFTY 320
Cdd:pfam00032  63 LFKIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQIATVYY 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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