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Conserved domains on  [gi|1635255010|gb|QCO70282|]
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cytochrome b, partial (mitochondrion) [Aplopelia simplex]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 634.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00119   48 TGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00119  128 AFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00119  208 NPLGLNSNTDKIPFHPYFsYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00119  288 KLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 634.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00119   48 TGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00119  128 AFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00119  208 NPLGLNSNTDKIPFHPYFsYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00119  288 KLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-312 2.87e-105

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 312.49  E-value: 2.87e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGV*LLLT 76
Cdd:COG1290    56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLL 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  77 L*ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFVIAGLTIVHLTFLH 155
Cdd:COG1290   134 TMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLH 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 156 ESGSNNPLGI----SSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFA 230
Cdd:COG1290   214 RHGHNNPPGPerkkTEKVDGVPFHPYYtVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPF 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 231 YAILRSIP--NKLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVehPFIIIGQLAS 308
Cdd:COG1290   292 YGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINT 369


                  ....
gi 1635255010 309 FTYF 312
Cdd:COG1290   370 VTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-160 3.62e-70

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 216.47  E-value: 3.62e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGV*LLLTL* 78
Cdd:cd00284    39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESG 158
Cdd:cd00284   119 ATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQG 198


                  ..
gi 1635255010 159 SN 160
Cdd:cd00284   199 SS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-158 1.59e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 191.44  E-value: 1.59e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGV*LLLTL* 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTM 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESG 158
Cdd:pfam00033 110 STAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-283 1.39e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 195 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPLLHK-SKQRTMIFRPL 273
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128

                          90
                  ....*....|..
gi 1635255010 274 SQ--LLFWTLVA 283
Cdd:TIGR01156 129 ATtvFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 634.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00119   48 TGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00119  128 AFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00119  208 NPLGLNSNTDKIPFHPYFsYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00119  288 KLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362
CYTB MTH00131
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 578.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00131   47 TGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMT 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00131  127 AFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSN 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00131  207 NPLGLNSDADKISFHPYFsYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 286

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00131  287 KLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSL 361
CYTB MTH00100
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00100   47 TGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMAT 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00100  127 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSN 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00100  207 NPSGIPSDSDKIPFHPYYtIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 286

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00100  287 KLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLI 361
CYTB MTH00074
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 560.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00074   48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00074  128 AFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00074  208 NPTGLNSNPDKVPFHPYFsYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00074  288 KLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLL 362
CYTB MTH00191
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 544.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00191   44 TGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMAT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00191  124 AFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSN 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00191  204 NPLGLNSDSDKIPFHPYFsYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPN 283

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00191  284 KLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFL 358
CYTB MTH00156
cytochrome b; Provisional
 1-312 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 537.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00156   37 TGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMAT 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00156  117 AFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSN 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00156  197 NPLGLNSNIDKIPFHPYFtFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 276

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYF 312
Cdd:MTH00156  277 KLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00145
cytochrome b; Provisional
 1-312 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 517.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00145   48 TGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00145  128 AFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00145  208 NPLGLDSDGDKVPFHPYYtIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYF 312
Cdd:MTH00145  288 KLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 1-314 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 504.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00034   47 TGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLT 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00034  127 AFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSN 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00034  207 NPTGLNSNYDKVPFHTYFtTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 286

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00034  287 KLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSL 361
CYTB MTH00016
cytochrome b; Validated
 1-314 7.65e-174

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 486.11  E-value: 7.65e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00016   48 TGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00016  128 AFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00016  208 NPLGVNSNSDKVPFHPYYtSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00016  288 KLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFY 362
CYTB MTH00053
cytochrome b; Provisional
 1-312 3.87e-151

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 428.74  E-value: 3.87e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00053   48 TGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00053  128 AFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00053  208 NPIGVRSDIDKIPFHYYYvLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYF 312
Cdd:MTH00053  288 KLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYF 360
CYTB MTH00022
cytochrome b; Validated
 1-312 9.58e-151

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 427.58  E-value: 9.58e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00022   46 TGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMAT 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00022  126 AFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSN 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00022  206 NPIGLNSSVDKVSFHVYYtSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPN 285

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYF 312
Cdd:MTH00022  286 KLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYF 358
CYTB MTH00224
cytochrome b; Provisional
 1-313 1.44e-146

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 417.40  E-value: 1.44e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00224   48 TGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMAT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00224  128 AFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00224  208 NPIGINADSARIPFHPYYsIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPN 287

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFT 313
Cdd:MTH00224  288 KLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 1-312 4.04e-118

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 345.00  E-value: 4.04e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00033   44 TGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00033  124 AFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSN 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 237
Cdd:MTH00033  204 EPLGLVGLSDRTAFHVYFtIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSI 283

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1635255010 238 PNKLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPV-EHPFIIIGQLASFTYF 312
Cdd:MTH00033  284 PNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-312 2.87e-105

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 312.49  E-value: 2.87e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGV*LLLT 76
Cdd:COG1290    56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLL 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  77 L*ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFVIAGLTIVHLTFLH 155
Cdd:COG1290   134 TMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLH 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 156 ESGSNNPLGI----SSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFA 230
Cdd:COG1290   214 RHGHNNPPGPerkkTEKVDGVPFHPYYtVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPF 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 231 YAILRSIP--NKLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTWVGSQPVehPFIIIGQLAS 308
Cdd:COG1290   292 YGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINT 369


                  ....
gi 1635255010 309 FTYF 312
Cdd:COG1290   370 VTYF 373
CYTB MTH00086
cytochrome b; Provisional
 1-314 1.11e-102

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 304.94  E-value: 1.11e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00086   36 TGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMME 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00086  116 AFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGST 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHP-YFLKDILGFMLMFLpLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00086  196 SSLYCHGDYDKICFGPeYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPN 274

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSkqrTMIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFTI 314
Cdd:MTH00086  275 KVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFL 346
CYTB MTH00046
cytochrome b; Validated
 1-309 1.90e-78

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 242.97  E-value: 1.90e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGV*LLLTL*AT 80
Cdd:MTH00046   38 TGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVE 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  81 AFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESGSN 160
Cdd:MTH00046  118 AFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSS 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSN-CDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 238
Cdd:MTH00046  198 NPLFSSNGySDVVYFHSYFtVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSIN 277

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1635255010 239 NKLGGvLALAASVLILFLTPLLHKSKqrtmIFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLASF 309
Cdd:MTH00046  278 SKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-160 3.62e-70

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 216.47  E-value: 3.62e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGV*LLLTL* 78
Cdd:cd00284    39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESG 158
Cdd:cd00284   119 ATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQG 198


                  ..
gi 1635255010 159 SN 160
Cdd:cd00284   199 SS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-158 1.59e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 191.44  E-value: 1.59e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGV*LLLTL* 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTM 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLHFLLPFVIAGLTIVHLTFLHESG 158
Cdd:pfam00033 110 STAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 161-307 1.64e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.08  E-value: 1.64e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 161 NPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:cd00290     1 NPLGLASDMDKISFHPYFwPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1635255010 240 KLGGVLALAASVLILFLTPLLHKSKQRTMiFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLA 307
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
211-311 1.04e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 155.33  E-value: 1.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 211 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPLLHKSKQRTMIFRPLSQLLFWTLVANLLILTW 290
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1635255010 291 VGSQPVEHPFIIIGQLASFTY 311
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
42-206 5.46e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.76  E-value: 5.46e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  42 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGV*LLLTL*ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 119
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 120 GGFSVDNPTLTRFFTLHF-LLPFVIAGLTIVHLTFLHESGSNNPLGISSNCDKIPFHPYF-LKDILGFMLMFLPLMTLAL 197
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFaVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1635255010 198 FSPNLLGDP 206
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-163 5.08e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 102.87  E-value: 5.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGV*LLLTL* 78
Cdd:PRK03735   58 SGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTV 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFVIAGLTIVHLTFLHES 157
Cdd:PRK03735  138 GLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQ 217


                  ....*.
gi 1635255010 158 GSNNPL 163
Cdd:PRK03735  218 GISGPL 223
petB CHL00070
cytochrome b6
 1-163 2.34e-24

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 98.25  E-value: 2.34e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010   1 TGLLLAAHYTADTSLAFSSVAHTCRNVQYGW**RNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGV*LLLTL* 78
Cdd:CHL00070   50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010  79 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFVIAGLTIVHLTFLHES 157
Cdd:CHL00070  130 SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQ 209


                  ....*.
gi 1635255010 158 GSNNPL 163
Cdd:CHL00070  210 GISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 195-283 2.36e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 2.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 195 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPLLHK-SKQRTMIFRPL 273
Cdd:CHL00058   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPV 128

                          90
                  ....*....|..
gi 1635255010 274 SQL--LFWTLVA 283
Cdd:CHL00058  129 ATTvfLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 195-282 1.89e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 1.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 195 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPLLHK-SKQRTMIFRPL 273
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPV 129

                          90
                  ....*....|.
gi 1635255010 274 SQ--LLFWTLV 282
Cdd:COG5679   130 ATavFLFGTLV 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-283 1.39e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1635255010 195 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPLLHK-SKQRTMIFRPL 273
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128

                          90
                  ....*....|..
gi 1635255010 274 SQ--LLFWTLVA 283
Cdd:TIGR01156 129 ATtvFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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