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Conserved domains on  [gi|1632161013|gb|QCI56782|]
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cytochrome b, partial (mitochondrion) [Aphyocypris normalis]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 773.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00131   10 LLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00131   90 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00131  170 VDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00131  250 LGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLV 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00131  330 ADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 773.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00131   10 LLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00131   90 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00131  170 VDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00131  250 LGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLV 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00131  330 ADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
25-363 4.28e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.55  E-value: 4.28e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  25 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMHVARGLYYGSYLYKE 104
Cdd:COG1290    41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPR 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 105 TCN--IGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTRFFAFH-FLLPFV 181
Cdd:COG1290   121 ELNwiIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 182 VAAATILHLLFLHETGSNNPAG----LNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNllGDPENFTPANPLVT 257
Cdd:COG1290   201 LLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 258 PPHIKPECYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVADMIILTCIGGMP 335
Cdd:COG1290   279 PAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358

                         330       340
                  ....*....|....*....|....*...
gi 1632161013 336 VehPYIIIGQIASVLYFALFLILTPLAG 363
Cdd:COG1290   359 P--IATLLGSINTVTYFAFFLIVLPILA 384
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.40e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 1.40e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   2 LLMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  82 FFFICIYMHVARGLYYGSY--LYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1632161013 160 GFSVDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.86e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.21  E-value: 1.86e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYG--SYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1632161013 169 TRFFAFHFLLPFVVAAATILHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 773.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00131   10 LLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00131   90 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00131  170 VDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00131  250 LGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLV 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00131  330 ADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00119
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 685.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00119   11 LLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00119   91 FFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00119  171 VDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00119  251 LGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00119  331 ANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00074
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 680.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00074   11 LLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00074   91 FFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00074  171 VDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00074  251 LGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00074  331 ANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00100
cytochrome b; Provisional
 3-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 669.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00100   10 LMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00100   90 FFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00100  170 VDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00100  250 LGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLV 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00100  330 ADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00191
cytochrome b; Provisional
 3-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 645.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00191    7 LLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00191   87 FFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00191  167 VDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00191  247 LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWV 326

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPL 361
Cdd:MTH00191  327 ANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 4-358 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 613.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   4 MKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  84 FICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 164 DNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNLL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 244 GDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1632161013 324 DMIILTCIGGMPVEHPYIIIGQIASVLYFALFLIL 358
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 3-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 589.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00034   10 LFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00034   90 FFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00034  170 VDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTA 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00034  250 LNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLI 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENK 368
Cdd:MTH00034  330 ATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00145
cytochrome b; Provisional
 3-358 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 573.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00145   11 VLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00145   91 FFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00145  171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00145  251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFV 330

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLIL 358
Cdd:MTH00145  331 GNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 3-359 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 551.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00016   11 LIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00016   91 FFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00016  171 VDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNI 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00016  251 LGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLV 330

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILT 359
Cdd:MTH00016  331 SNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINP 367
CYTB MTH00053
cytochrome b; Provisional
 11-371 2.26e-179

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 503.08  E-value: 2.26e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:MTH00053   19 FIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTR 170
Cdd:MTH00053   99 IGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 171 FFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNLLGDPENFT 250
Cdd:MTH00053  179 FYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFK 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 251 PANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVADMIILTC 330
Cdd:MTH00053  259 QANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTW 338

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1632161013 331 IGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00053  339 IGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 3-371 1.22e-178

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 501.15  E-value: 1.22e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00022    9 LLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00022   89 FFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00022  169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00022  249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLI 328

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFLILTPLAGCLENKALK 371
Cdd:MTH00022  329 VDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 3-371 1.76e-171

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 482.88  E-value: 1.76e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   3 LMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASF 82
Cdd:MTH00224   11 AIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASM 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  83 FFICIYMHVARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFS 162
Cdd:MTH00224   91 FFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 163 VDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNL 242
Cdd:MTH00224  171 VDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 243 LGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLV 322
Cdd:MTH00224  251 FTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLV 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1632161013 323 ADMIILTCIGGMPVEHPYIIIGQIASVLYFALFlILTPLAGCLENKALK 371
Cdd:MTH00224  331 TSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 11-367 1.78e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 383.90  E-value: 1.78e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTR 170
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 171 FFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFS--PNLLGDPEN 248
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPEN 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 249 FTPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVADMIIL 328
Cdd:MTH00033  255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1632161013 329 TCIGGMPV-EHPYIIIGQIASVLYFALFLILTPLAGCLEN 367
Cdd:MTH00033  335 TWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
25-363 4.28e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.55  E-value: 4.28e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  25 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMHVARGLYYGSYLYKE 104
Cdd:COG1290    41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPR 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 105 TCN--IGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTRFFAFH-FLLPFV 181
Cdd:COG1290   121 ELNwiIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 182 VAAATILHLLFLHETGSNNPAG----LNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNllGDPENFTPANPLVT 257
Cdd:COG1290   201 LLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 258 PPHIKPECYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVADMIILTCIGGMP 335
Cdd:COG1290   279 PAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358

                         330       340
                  ....*....|....*....|....*...
gi 1632161013 336 VehPYIIIGQIASVLYFALFLILTPLAG 363
Cdd:COG1290   359 P--IATLLGSINTVTYFAFFLIVLPILA 384
CYTB MTH00086
cytochrome b; Provisional
 11-358 4.05e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 338.84  E-value: 4.05e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:MTH00086    7 VVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLH 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTR 170
Cdd:MTH00086   87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKF 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 171 FFAFHFLLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLaLTSLALFSPNLLGDPENFT 250
Cdd:MTH00086  167 FFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 251 PANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQrglTFRPITQFLFCTLVADMIILTC 330
Cdd:MTH00086  246 EADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSW 322

                         330       340
                  ....*....|....*....|....*...
gi 1632161013 331 IGGMPVEHPYIIIGQIASVLYFALFLIL 358
Cdd:MTH00086  323 LGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.40e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 1.40e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013   2 LLMKIDSHALVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  82 FFFICIYMHVARGLYYGSY--LYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1632161013 160 GFSVDNATLTRFFAFHFLLPFVVAAATILHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-357 1.13e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 250.67  E-value: 1.13e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYGSYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTR 170
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 171 FFAFHFLLPFVVAAATILHLLFLHETGSNNPAGL-NSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNLLGDPENF 249
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 250 TPANPLVTPPHIKPECYFLFAYAILRSIPNKLGGvLALLFSILVLMVVPilhtSKQRGLTFRPITQFLFCTLVADMIILT 329
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|....*...
gi 1632161013 330 CIGGMPVEHPYIIIGQIASVLYFALFLI 357
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.86e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.21  E-value: 1.86e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  11 LVDLPQPSNISACCNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  91 VARGLYYG--SYLYKETCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1632161013 169 TRFFAFHFLLPFVVAAATILHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-347 6.01e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 172.45  E-value: 6.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 200 NPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNLLGDPENFTPANPLVTPPHIKPECYFLFAYAILRSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1632161013 280 KLGGVLALLFSILVLMVVPILHTSKQRGlTFRPITQFLFCTLVADMIILTCIGGMPVEHPYIIIGQIA 347
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-351 2.57e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 153.40  E-value: 2.57e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 251 PANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFCTLVADMIILTC 330
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1632161013 331 IGGMPVEHPYIIIGQIASVLY 351
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 5.52e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.09  E-value: 5.52e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  81 SFFFICIYMHVARGLYYGSYLYKETCN--IGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCIC 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNwiIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 159 GGFSVDNATLTRFFAFHF-LLPFVVAAATILHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLAL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1632161013 238 FSPNLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 26-201 1.25e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.44  E-value: 1.25e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  26 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMHVARGLYYGSYLYKET 105
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 106 CN--IGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTRFFAFH-FLLPFVV 182
Cdd:PRK03735  124 LNwvVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1632161013 183 AAATILHLLFLHETGSNNP 201
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 14-201 1.70e-25

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 102.49  E-value: 1.70e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  14 LPQPSNISACcnFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGCLIRNLHANGASFFFICIYMHVAR 93
Cdd:CHL00070   26 VPPHVNIFYC--LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013  94 GLYYGSYLYKE--TCNIGVVLLLLVMMTAFVGYVLPCGQMSFCGATVITNLLSAVPYMGDTLVQCICGGFSVDNATLTRF 171
Cdd:CHL00070  104 VYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1632161013 172 FAFH-FLLPFVVAAATILHLLFLHETGSNNP 201
Cdd:CHL00070  184 YSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 232-323 9.12e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.63  E-value: 9.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1632161013 232 LTSLALFSPNLLGDPenftpANPLVTPPHIKPECYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL-HTSKQRGLTF 310
Cdd:CHL00058   51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFR 125

                          90
                  ....*....|....*
gi 1632161013 311 RPI--TQFLFCTLVA 323
Cdd:CHL00058  126 RPVatTVFLIGTAVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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