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Conserved domains on  [gi|1631824302|gb|QCI08067|]
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Molybdopterin biosynthesis protein [Plumaria plumosa]

Protein Classification

HesA/MoeB/ThiF family protein( domain architecture ID 11422192)

HesA/MoeB/ThiF family protein is an E1-like enzyme containing an NAD/FAD-binding fold that is involved in molybdopterin and thiamine biosynthesis

CATH:  3.40.50.720
EC:  2.7.7.-
Gene Ontology:  GO:0016779

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ThiF COG0476
Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; ...
13-245 5.89e-102

Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; Molybdopterin or thiamine biosynthesis adenylyltransferase is part of the Pathway/BioSystem: Molybdopterin biosynthesis


:

Pssm-ID: 440244 [Multi-domain]  Cd Length: 244  Bit Score: 296.27  E-value: 5.89e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  13 EEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQL 92
Cdd:COG0476     2 DEELERYSRQILLPEIGEEGQEKLKAARVLVVGAGGLGSPVALYLAAAGVGTLTLVDDDVVELSNLQRQILYTEADVGRP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  93 KTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFN 172
Cdd:COG0476    82 KVEAAAERLRALNPDVEVEAIPERLTEENALELLAGADLVLDCTDNFATRYLLNDACVKLGIPLVSGAVIGFEGQVTVFI 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 173 YKSGPRYSDIYPKILNlKDFSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:COG0476   162 PGDTPCYRCLFPEPPE-PGPSCAEAGVLGPLVGVIGSLQATEAIKLLTGIGEPLAGRLLLFDALTMEFRTIKL 233
 
Name Accession Description Interval E-value
ThiF COG0476
Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; ...
13-245 5.89e-102

Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; Molybdopterin or thiamine biosynthesis adenylyltransferase is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 440244 [Multi-domain]  Cd Length: 244  Bit Score: 296.27  E-value: 5.89e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  13 EEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQL 92
Cdd:COG0476     2 DEELERYSRQILLPEIGEEGQEKLKAARVLVVGAGGLGSPVALYLAAAGVGTLTLVDDDVVELSNLQRQILYTEADVGRP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  93 KTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFN 172
Cdd:COG0476    82 KVEAAAERLRALNPDVEVEAIPERLTEENALELLAGADLVLDCTDNFATRYLLNDACVKLGIPLVSGAVIGFEGQVTVFI 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 173 YKSGPRYSDIYPKILNlKDFSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:COG0476   162 PGDTPCYRCLFPEPPE-PGPSCAEAGVLGPLVGVIGSLQATEAIKLLTGIGEPLAGRLLLFDALTMEFRTIKL 233
ThiF_MoeB_HesA_family cd00757
ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis ...
19-245 5.54e-100

ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).


Pssm-ID: 238386 [Multi-domain]  Cd Length: 228  Bit Score: 290.92  E-value: 5.54e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:cd00757     2 YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  99 QRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFNYKSGPR 178
Cdd:cd00757    82 ERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPC 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1631824302 179 YSDIYPKILNLKDFSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:cd00757   162 YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228
PRK07411 PRK07411
molybdopterin-synthase adenylyltransferase MoeB;
1-245 6.09e-88

molybdopterin-synthase adenylyltransferase MoeB;


Pssm-ID: 180967 [Multi-domain]  Cd Length: 390  Bit Score: 265.83  E-value: 6.09e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   1 MLNPNLKKINLREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSR 80
Cdd:PRK07411    1 MLNPNLDEIQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  81 QILFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGG 160
Cdd:PRK07411   81 QVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 161 IQQFEGQISVFNYKSGPRYSDIYPK-----ILNlkdfSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNS 235
Cdd:PRK07411  161 IFRFEGQATVFNYEGGPNYRDLYPEppppgMVP----SCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNA 236
                         250
                  ....*....|
gi 1631824302 236 LYSSFKLIKV 245
Cdd:PRK07411  237 LDMKFRELKL 246
ThiF pfam00899
ThiF family; This domain is found in ubiquitin activating E1 family and members of the ...
19-246 5.50e-76

ThiF family; This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.


Pssm-ID: 459987 [Multi-domain]  Cd Length: 238  Bit Score: 230.22  E-value: 5.50e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:pfam00899   1 YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNLNRQFLFREADIGKPKAEVAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  99 QRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFNYKSGPR 178
Cdd:pfam00899  81 ERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPC 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 179 YSDIYPKILNLKDF-SCNLNGVLGIITGTIGILQATEAIKIILGVGKI-LHQDLLIYNSLYSSFKLIKVN 246
Cdd:pfam00899 161 YRCLFPEDPPPKLVpSCTVAGVLGPTTAVVAGLQALEALKLLLGKGEPnLAGRLLQFDALTMTFRELRLA 230
Ube1 TIGR01408
ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino ...
28-149 3.19e-17

ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.


Pssm-ID: 273603 [Multi-domain]  Cd Length: 1006  Bit Score: 80.70  E-value: 3.19e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   28 IGINGQKRLKSSKILIIGAGGLGCPAILYLAALGI-----GYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQ 102
Cdd:TIGR01408  409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVgtgkkGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL 488
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1631824302  103 KINPQCKIITHSYKL--TEYNAF--EIIKYYNIIIDASDNFKTRYIINYTC 149
Cdd:TIGR01408  489 KINPQIKIDAHQNRVgpETETIFndEFYEKLDVVINALDNVEARRYVDSRC 539
 
Name Accession Description Interval E-value
ThiF COG0476
Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; ...
13-245 5.89e-102

Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; Molybdopterin or thiamine biosynthesis adenylyltransferase is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 440244 [Multi-domain]  Cd Length: 244  Bit Score: 296.27  E-value: 5.89e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  13 EEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQL 92
Cdd:COG0476     2 DEELERYSRQILLPEIGEEGQEKLKAARVLVVGAGGLGSPVALYLAAAGVGTLTLVDDDVVELSNLQRQILYTEADVGRP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  93 KTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFN 172
Cdd:COG0476    82 KVEAAAERLRALNPDVEVEAIPERLTEENALELLAGADLVLDCTDNFATRYLLNDACVKLGIPLVSGAVIGFEGQVTVFI 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 173 YKSGPRYSDIYPKILNlKDFSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:COG0476   162 PGDTPCYRCLFPEPPE-PGPSCAEAGVLGPLVGVIGSLQATEAIKLLTGIGEPLAGRLLLFDALTMEFRTIKL 233
ThiF_MoeB_HesA_family cd00757
ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis ...
19-245 5.54e-100

ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).


Pssm-ID: 238386 [Multi-domain]  Cd Length: 228  Bit Score: 290.92  E-value: 5.54e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:cd00757     2 YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  99 QRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFNYKSGPR 178
Cdd:cd00757    82 ERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPC 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1631824302 179 YSDIYPKILNLKDFSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:cd00757   162 YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228
PRK07411 PRK07411
molybdopterin-synthase adenylyltransferase MoeB;
1-245 6.09e-88

molybdopterin-synthase adenylyltransferase MoeB;


Pssm-ID: 180967 [Multi-domain]  Cd Length: 390  Bit Score: 265.83  E-value: 6.09e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   1 MLNPNLKKINLREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSR 80
Cdd:PRK07411    1 MLNPNLDEIQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  81 QILFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGG 160
Cdd:PRK07411   81 QVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 161 IQQFEGQISVFNYKSGPRYSDIYPK-----ILNlkdfSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNS 235
Cdd:PRK07411  161 IFRFEGQATVFNYEGGPNYRDLYPEppppgMVP----SCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNA 236
                         250
                  ....*....|
gi 1631824302 236 LYSSFKLIKV 245
Cdd:PRK07411  237 LDMKFRELKL 246
PRK08762 PRK08762
molybdopterin-synthase adenylyltransferase MoeB;
3-245 9.69e-84

molybdopterin-synthase adenylyltransferase MoeB;


Pssm-ID: 236337 [Multi-domain]  Cd Length: 376  Bit Score: 254.94  E-value: 9.69e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   3 NPNLKKINLREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQI 82
Cdd:PRK08762  100 LPLERPRLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQI 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  83 LFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQ 162
Cdd:PRK08762  180 LHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVF 259
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 163 QFEGQISVFN----YKSGPRYSDIYPKILNlKDF--SCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSL 236
Cdd:PRK08762  260 RFEGQVSVFDagrqRGQAPCYRCLFPEPPP-PELapSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDAL 338

                  ....*....
gi 1631824302 237 YSSFKLIKV 245
Cdd:PRK08762  339 AMRFRELRL 347
PRK05690 PRK05690
molybdopterin biosynthesis protein MoeB; Provisional
11-245 1.08e-78

molybdopterin biosynthesis protein MoeB; Provisional


Pssm-ID: 180204 [Multi-domain]  Cd Length: 245  Bit Score: 237.44  E-value: 1.08e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  11 LREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNN 90
Cdd:PRK05690    5 LSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIG 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  91 QLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISV 170
Cdd:PRK05690   85 QPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 171 FNY-KSGPRYSDIYPkilnlkDF-----SCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIK 244
Cdd:PRK05690  165 FTYqDDEPCYRCLSR------LFgenalTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMK 238

                  .
gi 1631824302 245 V 245
Cdd:PRK05690  239 L 239
ThiF pfam00899
ThiF family; This domain is found in ubiquitin activating E1 family and members of the ...
19-246 5.50e-76

ThiF family; This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.


Pssm-ID: 459987 [Multi-domain]  Cd Length: 238  Bit Score: 230.22  E-value: 5.50e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:pfam00899   1 YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNLNRQFLFREADIGKPKAEVAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  99 QRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFNYKSGPR 178
Cdd:pfam00899  81 ERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPC 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 179 YSDIYPKILNLKDF-SCNLNGVLGIITGTIGILQATEAIKIILGVGKI-LHQDLLIYNSLYSSFKLIKVN 246
Cdd:pfam00899 161 YRCLFPEDPPPKLVpSCTVAGVLGPTTAVVAGLQALEALKLLLGKGEPnLAGRLLQFDALTMTFRELRLA 230
PRK07878 PRK07878
molybdopterin biosynthesis-like protein MoeZ; Validated
11-245 3.93e-75

molybdopterin biosynthesis-like protein MoeZ; Validated


Pssm-ID: 181156 [Multi-domain]  Cd Length: 392  Bit Score: 233.45  E-value: 3.93e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  11 LREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNN 90
Cdd:PRK07878   15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  91 QLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISV 170
Cdd:PRK07878   95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASV 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 171 F----NYKSGPRYSDIYPK-----ILNlkdfSCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFK 241
Cdd:PRK07878  175 FwedaPDGLGLNYRDLYPEppppgMVP----SCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYR 250

                  ....
gi 1631824302 242 LIKV 245
Cdd:PRK07878  251 TIKI 254
PRK05597 PRK05597
molybdopterin biosynthesis protein MoeB; Validated
19-247 8.62e-61

molybdopterin biosynthesis protein MoeB; Validated


Pssm-ID: 235526 [Multi-domain]  Cd Length: 355  Bit Score: 195.48  E-value: 8.62e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:PRK05597    9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  99 QRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFNYKSGPR 178
Cdd:PRK05597   89 EAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPI 168
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 179 YSDIYPKILNLKDF-SCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKVNS 247
Cdd:PRK05597  169 YEDLFPTPPPPGSVpSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVG 238
PRK05600 PRK05600
thiamine biosynthesis protein ThiF; Validated
8-245 1.32e-51

thiamine biosynthesis protein ThiF; Validated


Pssm-ID: 235528 [Multi-domain]  Cd Length: 370  Bit Score: 171.99  E-value: 1.32e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   8 KINLREEEYTIYARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQE 87
Cdd:PRK05600   11 FMQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGAS 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  88 NNNQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIinytCYQLHKIH----IYGGIQQ 163
Cdd:PRK05600   91 DVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFL----VADAAEITgtplVWGTVLR 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 164 FEGQISVFNYKSGPR---YSDIYPKILNlKDF--SCNLNGVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYS 238
Cdd:PRK05600  167 FHGELAVFNSGPDHRgvgLRDLFPEQPS-GDSipDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTA 245

                  ....*..
gi 1631824302 239 SFKLIKV 245
Cdd:PRK05600  246 TTRSFRV 252
PRK08328 PRK08328
hypothetical protein; Provisional
11-245 2.09e-40

hypothetical protein; Provisional


Pssm-ID: 169382 [Multi-domain]  Cd Length: 231  Bit Score: 139.16  E-value: 2.09e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  11 LREEEYTIYARHLILenIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQEN-N 89
Cdd:PRK08328    2 LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDlG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  90 NQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQIS 169
Cdd:PRK08328   80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVT 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1631824302 170 VFNYKSGPRYSDIYPKILNLKD-FScnlngVLGIITGTIGILQATEAIKIILGVGKILHQDLLIYNSLYSSFKLIKV 245
Cdd:PRK08328  160 TIVPGKTKRLREIFPKVKKKKGkFP-----ILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231
PRK07688 PRK07688
thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
19-251 1.77e-31

thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated


Pssm-ID: 181084 [Multi-domain]  Cd Length: 339  Bit Score: 118.56  E-value: 1.77e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQEN--NNQLKTIC 96
Cdd:PRK07688    5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDvkNNLPKAVA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  97 AKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQlHKI-HIYGGiqqfegqiSVFNYks 175
Cdd:PRK07688   85 AKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK-YGIpWIYGA--------CVGSY-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 176 GPRYSDIYPKILNLkdfSCNLNGV-LGIIT-GTIGIL----------QATEAIKIILGVGKILHQDLLiynslysSFKLI 243
Cdd:PRK07688  154 GLSYTIIPGKTPCL---RCLLQSIpLGGATcDTAGIIspavqivasyQVTEALKLLVGDYEALRDGLV-------SFDVW 223

                  ....*...
gi 1631824302 244 KVNSLKMN 251
Cdd:PRK07688  224 KNEYSCMN 231
PRK12475 PRK12475
thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
19-249 1.15e-29

thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional


Pssm-ID: 183547 [Multi-domain]  Cd Length: 338  Bit Score: 113.67  E-value: 1.15e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILENIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQL--KTIC 96
Cdd:PRK12475    5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKkpKAIA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  97 AKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINyTCYQLHKIH-IYGGiqqfegqiSVFNYks 175
Cdd:PRK12475   85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLIN-DLSQKYNIPwIYGG--------CVGSY-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 176 GPRYSDIYPKIlnlKDFSCNLNGV---------LGIITGTIGIL---QATEAIKIILGVGKILHQDLLIYNSLYSSFKLI 243
Cdd:PRK12475  154 GVTYTIIPGKT---PCLRCLMEHVpvggatcdtAGIIQPAVQIVvayQVTEALKILVEDFEALRETFLSFDIWNNQNMSI 230

                  ....*.
gi 1631824302 244 KVNSLK 249
Cdd:PRK12475  231 KVNKQK 236
E1_enzyme_family cd01483
Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes ...
40-172 8.13e-28

Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.


Pssm-ID: 238760 [Multi-domain]  Cd Length: 143  Bit Score: 103.89  E-value: 8.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTE 119
Cdd:cd01483     1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 120 YNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISVFN 172
Cdd:cd01483    81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133
YgdL_like cd00755
Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli ...
28-157 3.01e-24

Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.


Pssm-ID: 238384 [Multi-domain]  Cd Length: 231  Bit Score: 96.91  E-value: 3.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  28 IGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQ 107
Cdd:cd00755     1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1631824302 108 CKIITHSYKLTEYNAFEII-KYYNIIIDASDNFKTRYIINYTCYQlHKIHI 157
Cdd:cd00755    81 CEVDAVEEFLTPDNSEDLLgGDPDFVVDAIDSIRAKVALIAYCRK-RKIPV 130
E1-2_like cd01484
Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present ...
40-170 1.32e-22

Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1.


Pssm-ID: 238761 [Multi-domain]  Cd Length: 234  Bit Score: 92.64  E-value: 1.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTE 119
Cdd:cd01484     1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 120 YNAF--EIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISV 170
Cdd:cd01484    81 EQDFndTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQV 133
TcdA COG1179
tRNA A37 threonylcarbamoyladenosine dehydratase [Translation, ribosomal structure and ...
28-157 9.56e-22

tRNA A37 threonylcarbamoyladenosine dehydratase [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine dehydratase is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440792  Cd Length: 247  Bit Score: 90.53  E-value: 9.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  28 IGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQ 107
Cdd:COG1179    14 YGEEGLERLANAHVAVVGLGGVGSWAAEALARSGVGRLTLVDLDDVCESNINRQLHALDSTVGRPKVEVMAERIRDINPD 93
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1631824302 108 CKIITHSYKLTEYNAFEIIKY-YNIIIDASDNFKTRYIINYTCYQlHKIHI 157
Cdd:COG1179    94 CEVTAIDEFVTPENADELLSEdYDYVIDAIDSVSAKAALIAWCRR-RGIPI 143
Uba3_RUB cd01488
Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating ...
40-170 3.96e-21

Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.


Pssm-ID: 238765 [Multi-domain]  Cd Length: 291  Bit Score: 89.72  E-value: 3.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIITHSYKLTE 119
Cdd:cd01488     1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1631824302 120 YNAfEIIKYYNIIIDASDNFKTRYIIN--------YTCYQLHKIHIYGGIQQFEGQISV 170
Cdd:cd01488    81 KDE-EFYRQFNIIICGLDSIEARRWINgtlvslllYEDPESIIPLIDGGTEGFKGHARV 138
Uba2_SUMO cd01489
Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating ...
40-170 5.41e-21

Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.


Pssm-ID: 238766 [Multi-domain]  Cd Length: 312  Bit Score: 89.75  E-value: 5.41e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIITH--SYKL 117
Cdd:cd01489     1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYhaNIKD 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631824302 118 TEYNAfEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQISV 170
Cdd:cd01489    81 PDFNV-EFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQV 132
PRK08644 PRK08644
sulfur carrier protein ThiS adenylyltransferase ThiF;
33-138 1.75e-18

sulfur carrier protein ThiS adenylyltransferase ThiF;


Pssm-ID: 236320 [Multi-domain]  Cd Length: 212  Bit Score: 81.06  E-value: 1.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  33 QKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFnQENNNQLKTICAKQRIQKINPQCKIIT 112
Cdd:PRK08644   23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPFVEIEA 101
                          90       100
                  ....*....|....*....|....*.
gi 1631824302 113 HSYKLTEYNAFEIIKYYNIIIDASDN 138
Cdd:PRK08644  102 HNEKIDEDNIEELFKDCDIVVEAFDN 127
Ube1 TIGR01408
ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino ...
28-149 3.19e-17

ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.


Pssm-ID: 273603 [Multi-domain]  Cd Length: 1006  Bit Score: 80.70  E-value: 3.19e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302   28 IGINGQKRLKSSKILIIGAGGLGCPAILYLAALGI-----GYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQ 102
Cdd:TIGR01408  409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVgtgkkGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL 488
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1631824302  103 KINPQCKIITHSYKL--TEYNAF--EIIKYYNIIIDASDNFKTRYIINYTC 149
Cdd:TIGR01408  489 KINPQIKIDAHQNRVgpETETIFndEFYEKLDVVINALDNVEARRYVDSRC 539
E1_ThiF_like cd01487
E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. ...
40-138 1.04e-16

E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.


Pssm-ID: 238764 [Multi-domain]  Cd Length: 174  Bit Score: 75.50  E-value: 1.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFnQENNNQLKTICAKQRIQKINPQCKIITHSYKLTE 119
Cdd:cd01487     1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79
                          90
                  ....*....|....*....
gi 1631824302 120 YNAFEIIKYYNIIIDASDN 138
Cdd:cd01487    80 NNLEGLFGDCDIVVEAFDN 98
Ube1_repeat2 cd01490
Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present ...
40-149 1.94e-16

Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.


Pssm-ID: 238767 [Multi-domain]  Cd Length: 435  Bit Score: 78.10  E-value: 1.94e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGI-----GYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIITHS 114
Cdd:cd01490     1 KVFLVGAGAIGCELLKNFALMGVgtgesGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1631824302 115 YKL---TE--YNAfEIIKYYNIIIDASDNFKTRYIINYTC 149
Cdd:cd01490    81 NRVgpeTEhiFND-EFWEKLDGVANALDNVDARMYVDRRC 119
PRK15116 PRK15116
sulfur acceptor protein CsdL; Provisional
32-140 6.67e-12

sulfur acceptor protein CsdL; Provisional


Pssm-ID: 185071  Cd Length: 268  Bit Score: 63.67  E-value: 6.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  32 GQKRLK---SSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQC 108
Cdd:PRK15116   21 GEKALQlfaDAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPEC 100
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1631824302 109 KIITHSYKLTEYNAFEII-KYYNIIIDASDNFK 140
Cdd:PRK15116  101 RVTVVDDFITPDNVAEYMsAGFSYVIDAIDSVR 133
Aos1_SUMO cd01492
Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating ...
29-149 7.75e-12

Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.


Pssm-ID: 238769 [Multi-domain]  Cd Length: 197  Bit Score: 62.31  E-value: 7.75e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  29 GINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQC 108
Cdd:cd01492    12 GLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRV 91
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1631824302 109 KIITHSYKLTEYNAfEIIKYYNIIIDASDNFKTRYIINYTC 149
Cdd:cd01492    92 KVSVDTDDISEKPE-EFFSQFDVVVATELSRAELVKINELC 131
Apg7 cd01486
Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and ...
40-106 9.92e-10

Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.


Pssm-ID: 238763 [Multi-domain]  Cd Length: 307  Bit Score: 57.77  E-value: 9.92e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1631824302  40 KILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQE--NNNQLKTICAKQRIQKINP 106
Cdd:cd01486     1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEdcKGGKPKAEAAAERLKEIFP 69
E1-1_like cd01485
Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present ...
18-238 4.39e-09

Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1.


Pssm-ID: 238762 [Multi-domain]  Cd Length: 198  Bit Score: 54.74  E-value: 4.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  18 IYARHLILenIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNN--QLKTI 95
Cdd:cd01485     1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNsgMNRAA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  96 CAKQRIQKINPQCK--IITHSYKLTEYNAFEIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHIYGGIQQFEGQIsvFNy 173
Cdd:cd01485    79 ASYEFLQELNPNVKlsIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA--FF- 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1631824302 174 ksgprysdiypkilnlkDFScnlngvlgiITGTIGILQATEAIKIILGVGKILHQdLLIYNSLYS 238
Cdd:cd01485   156 -----------------DFP---------IAAFLGGVVAQEAIKSISGKFTPLNN-LYIYDGFES 193
PRK08223 PRK08223
hypothetical protein; Validated
33-139 1.28e-08

hypothetical protein; Validated


Pssm-ID: 181302 [Multi-domain]  Cd Length: 287  Bit Score: 54.30  E-value: 1.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  33 QKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAKQRIQKINPQCKIIT 112
Cdd:PRK08223   22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101
                          90       100
                  ....*....|....*....|....*..
gi 1631824302 113 HSYKLTEYNAFEIIKYYNIIIDASDNF 139
Cdd:PRK08223  102 FPEGIGKENADAFLDGVDVYVDGLDFF 128
E1_like_apg7 TIGR01381
E1-like protein-activating enzyme Gsa7p/Apg7p; This model represents a family of eukaryotic ...
35-157 1.27e-07

E1-like protein-activating enzyme Gsa7p/Apg7p; This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.


Pssm-ID: 273590 [Multi-domain]  Cd Length: 664  Bit Score: 52.25  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  35 RLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQEN---NNQLKTICAKQRIQKINPQckII 111
Cdd:TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDcllGGRGKAETAQKALKRIFPS--IQ 412
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1631824302 112 THSYKLT------------------EYNAF-EIIKYYNIIIDASDNFKTRYIINYTCYQLHKIHI 157
Cdd:TIGR01381 413 ATGHRLTvpmpghpidekdvpelekDIARLeQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477
PRK14851 PRK14851
hypothetical protein; Provisional
13-225 8.03e-06

hypothetical protein; Provisional


Pssm-ID: 184853 [Multi-domain]  Cd Length: 679  Bit Score: 46.78  E-value: 8.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  13 EEEYTIYArhlILENIGI---NGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENN 89
Cdd:PRK14851   18 AAEYREAA---FSRNIGLftpGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  90 NQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASD--NFKTRYIINYTCYQLHKIHIYGGIQQFEGQ 167
Cdd:PRK14851   95 GRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDffQFEIRRTLFNMAREKGIPVITAGPLGYSSA 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302 168 ISV-----------FNYKSGPRYSDIY--------PKILNLK--DFS---------CNLNGVLGIITGtigiLQATEAIK 217
Cdd:PRK14851  175 MLVftpqgmgfddyFNIGGKMPEEQKYlrfamglaPRPTHIKymDLSkvdlkggkgPSLNIACQLCSG----MAGTEAVR 250

                  ....*...
gi 1631824302 218 IILGVGKI 225
Cdd:PRK14851  251 IILGKGGL 258
PRK14852 PRK14852
hypothetical protein; Provisional
11-139 1.94e-05

hypothetical protein; Provisional


Pssm-ID: 184854 [Multi-domain]  Cd Length: 989  Bit Score: 45.46  E-value: 1.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  11 LREEEYTIYARHLILENIGI---NGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQE 87
Cdd:PRK14852  302 LKLETRDAYTDIAFSRNLGLvdyAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIA 381
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1631824302  88 NNNQLKTICAKQRIQKINPQCKIITHSYKLTEYNAFEIIKYYNIIIDASDNF 139
Cdd:PRK14852  382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFF 433
Ube1_repeat1 cd01491
Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present ...
19-119 3.84e-03

Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.


Pssm-ID: 238768 [Multi-domain]  Cd Length: 286  Bit Score: 38.02  E-value: 3.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILenIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:cd01491     2 YSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79
                          90       100
                  ....*....|....*....|.
gi 1631824302  99 QRIQKINPQCKIITHSYKLTE 119
Cdd:cd01491    80 ARLAELNPYVPVTVSTGPLTT 100
APPBP1_RUB cd01493
Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric ...
19-106 5.34e-03

Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.


Pssm-ID: 238770 [Multi-domain]  Cd Length: 425  Bit Score: 37.67  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631824302  19 YARHLILenIGINGQKRLKSSKILIIGAGGLGCPAILYLAALGIGYIGIIDEDRINRSNLSRQILFNQENNNQLKTICAK 98
Cdd:cd01493     3 YDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80

                  ....*...
gi 1631824302  99 QRIQKINP 106
Cdd:cd01493    81 ELLQELNP 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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