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Conserved domains on  [gi|1625854737|ref|WP_136515766|]
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ATP-binding protein [Geomonas edaphica]

Protein Classification

ATP-binding protein( domain architecture ID 11439316)

ATP-binding protein with an inserted 4Fe-4S ferreoxin, similar to Methanocaldococcus jannaschii proteins, MJ0578 and MJ0579

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 8-65 1.56e-14

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


:

Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 60.90  E-value: 1.56e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEVSGfrkyALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1149    6 PVIDEEKCIGCGLCVEVCPEGAIKLDDGG----APVVDPDLCTGCGACVGVCPTGAIT 59
 
Name Accession Description Interval E-value
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 8-65 1.56e-14

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 60.90  E-value: 1.56e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEVSGfrkyALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1149    6 PVIDEEKCIGCGLCVEVCPEGAIKLDDGG----APVVDPDLCTGCGACVGVCPTGAIT 59
PRK13795 PRK13795
hypothetical protein; Provisional
 14-61 8.28e-11

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 55.00  E-value: 8.28e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1625854737  14 RCTGCGRCVAACHERCITLEvSGFRKYAllVSPQLCNGCGACLAACPV 61
Cdd:PRK13795  582 ECVGCGVCVGACPTGAIRIE-EGKRKIS--VDEEKCIHCGKCTEVCPV 626
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 8-65 2.04e-08

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 48.15  E-value: 2.04e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCItleVSGFRKyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:cd03110    59 AFIDQEKCIRCGNCERVCKFGAI---LEFFQK--LIVDESLCEGCGACVIICPRGAIY 111
pyruv_ox_red TIGR02176
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single ...
 8-62 8.08e-08

pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.


Pssm-ID: 131231 [Multi-domain]  Cd Length: 1165  Bit Score: 46.69  E-value: 8.08e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737    8 PEIDPDRCTGCGRCVAACHERCITLEV----------SGFR------------KYALLVSPQLCNGCGACLAACPVR 62
Cdd:TIGR02176  678 PVWVPDNCIQCNQCAFVCPHAAIRPKLadeeelenapAGFKsldakgkelegmKFRIQISPLDCTGCGNCVDICPAK 754
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 7-60 3.24e-06

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 39.54  E-value: 3.24e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737  7 FPEIDPDRCTGCGRCVAAC--HERCITLEVSGFRKYALLVSPQLCNGCGACLAACP 60
Cdd:pfam13237  1 KVVIDPDKCIGCGRCTAACpaGLTRVGAIVERLEGEAVRIGVWKCIGCGACVEACP 56
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 13-63 3.56e-04

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 36.38  E-value: 3.56e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625854737  13 DRCTGCGRCVAACHERCITLEVSG--FRKYallvspqlCNGCGACLAACPVRA 63
Cdd:NF038196  185 DKCIGCGICAKVCPVNNIEMEDGKpvWGHN--------CTHCLACIHRCPKEA 229
 
Name Accession Description Interval E-value
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 8-65 1.56e-14

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 60.90  E-value: 1.56e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEVSGfrkyALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1149    6 PVIDEEKCIGCGLCVEVCPEGAIKLDDGG----APVVDPDLCTGCGACVGVCPTGAIT 59
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
7-65 7.74e-14

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 63.73  E-value: 7.74e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737   7 FPEIDPDRCTGCGRCVAACHERCITLEVSGFrkyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1148   490 VAEVDPEKCTGCGRCVEVCPYGAISIDEKGV----AEVNPALCKGCGTCAAACPSGAIS 544
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 7-65 3.63e-11

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 52.40  E-value: 3.63e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737  7 FPEIDPDRCTGCGRCVAACHERCITLEVSGFRkyALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1146    2 MPVIDTDKCIGCGACVEVCPVDVLELDEEGKK--ALVINPEECIGCGACELVCPVGAIT 58
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 8-65 4.28e-11

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 52.36  E-value: 4.28e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEvsgfrKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG2221   10 PKIDEEKCIGCGLCVAVCPTGAISLD-----DGKLVIDEEKCIGCGACIRVCPTGAIK 62
PRK13795 PRK13795
hypothetical protein; Provisional
 14-61 8.28e-11

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 55.00  E-value: 8.28e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1625854737  14 RCTGCGRCVAACHERCITLEvSGFRKYAllVSPQLCNGCGACLAACPV 61
Cdd:PRK13795  582 ECVGCGVCVGACPTGAIRIE-EGKRKIS--VDEEKCIHCGKCTEVCPV 626
NapF COG1145
Ferredoxin [Energy production and conversion];
9-65 2.01e-10

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 53.57  E-value: 2.01e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737   9 EIDPDRCTGCGRCVAACHERCITLEVSgfrKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1145   178 VIDAEKCIGCGLCVKVCPTGAIRLKDG---KPQIVVDPDKCIGCGACVKVCPVGAIS 231
PRK08318 PRK08318
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;
8-61 8.25e-10

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;


Pssm-ID: 236237 [Multi-domain]  Cd Length: 420  Bit Score: 52.25  E-value: 8.25e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737   8 PEIDPDRCTGCGRCVAACHE---RCITLEVSGFRKYAllVSPQLCNGCGACLAACPV 61
Cdd:PRK08318  337 ARIDQDKCIGCGRCYIACEDtshQAIEWDEDGTRTPE--VIEEECVGCNLCAHVCPV 391
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
8-65 1.15e-09

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 48.57  E-value: 1.15e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEvsgfrKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG2768    6 PYVDEEKCIGCGACVKVCPVGAISIE-----DGKAVIDPEKCIGCGACIEVCPVGAIK 58
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 8-65 1.17e-09

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 48.89  E-value: 1.17e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEVSGFrkyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1144   25 PVVDEDKCIGCGLCWIVCPDGAIRVDDGKY----YGIDYDYCKGCGICAEVCPVKAIE 78
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 9-65 7.52e-09

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 46.57  E-value: 7.52e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737  9 EIDPDRCTGCGRCVAACHERCITLEvsgfrKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG4231   18 VIDEDKCTGCGACVKVCPADAIEEG-----DGKAVIDPDLCIGCGSCVQVCPVDAIK 69
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 12-65 1.96e-08

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 45.51  E-value: 1.96e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1625854737 12 PDRCTGCGRCVAACHERCITLEvSGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1143    1 EDKCIGCGLCVRVCPVDAITIE-DGEPGKVYVIDPDKCIGCGLCVEVCPTGAIS 53
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 8-65 2.04e-08

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 48.15  E-value: 2.04e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCItleVSGFRKyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:cd03110    59 AFIDQEKCIRCGNCERVCKFGAI---LEFFQK--LIVDESLCEGCGACVIICPRGAIY 111
HybA COG0437
Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and ...
 10-65 7.40e-08

Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and conversion];


Pssm-ID: 440206 [Multi-domain]  Cd Length: 184  Bit Score: 46.09  E-value: 7.40e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737  10 IDPDRCTGCGRCVAACHE-----------RCITLEVSGFRKYALLVSPQLCNGCG--ACLAACPVRALT 65
Cdd:COG0437    10 IDLTKCIGCRACVVACKEennlpvgvtwrRVRRYEEGEFPNVEWLFVPVLCNHCDdpPCVKVCPTGATY 78
pyruv_ox_red TIGR02176
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single ...
 8-62 8.08e-08

pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.


Pssm-ID: 131231 [Multi-domain]  Cd Length: 1165  Bit Score: 46.69  E-value: 8.08e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737    8 PEIDPDRCTGCGRCVAACHERCITLEV----------SGFR------------KYALLVSPQLCNGCGACLAACPVR 62
Cdd:TIGR02176  678 PVWVPDNCIQCNQCAFVCPHAAIRPKLadeeelenapAGFKsldakgkelegmKFRIQISPLDCTGCGNCVDICPAK 754
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 9-64 3.05e-07

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 43.54  E-value: 3.05e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737   9 EIDPDRCTGCGRCVAACHERCITLEvsgfRKYALLVSPQLCNGCGACLAACPVRAL 64
Cdd:cd10549    74 EIDEEKCIGCGLCVKVCPVDAITLE----DELEIVIDKEKCIGCGICAEVCPVNAI 125
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-65 3.70e-07

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 43.54  E-value: 3.70e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLEVSGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:cd10549     1 LKYDPEKCIGCGICVKACPTDAIELGPNGAIARGPEIDEDKCVFCGACVEVCPTGAIE 58
PsrB cd10551
polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial ...
 10-63 1.02e-06

polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.


Pssm-ID: 319873 [Multi-domain]  Cd Length: 185  Bit Score: 42.90  E-value: 1.02e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737  10 IDPDRCTGCGRCVAACHE-----------RCITLEVSGFRKYALLVSPQLCNGCG--ACLAACPVRA 63
Cdd:cd10551     3 IDLRKCIGCGACVVACKAennvppgvfrnRVLEYEVGEYPNVKRTFLPVLCNHCEnpPCVKVCPTGA 69
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
10-65 1.19e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 43.48  E-value: 1.19e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737  10 IDPDRCTGCGRCVAACHERCItlevsGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG4624    88 RDKEKCKNCYPCVRACPVKAI-----KVDDGKAEIDEEKCISCGQCVAVCPFGAIT 138
PRK10194 PRK10194
ferredoxin-type protein NapF;
18-65 1.51e-06

ferredoxin-type protein NapF;


Pssm-ID: 182296 [Multi-domain]  Cd Length: 163  Bit Score: 42.32  E-value: 1.51e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1625854737  18 CGRCVAACHERCITLEVSGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:PRK10194  109 CRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAIT 156
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 13-64 1.98e-06

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 41.85  E-value: 1.98e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  13 DRCTGCGRCVAACHERCITLEVSGFrkyallvsPQL------CNGCGACLAACPVRAL 64
Cdd:cd10564    13 DLCTRCGDCVEACPEGIIVRGDGGF--------PELdfsrgeCTFCGACAEACPEGAL 62
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
1-65 2.41e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 42.23  E-value: 2.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737   1 MSLPHDFPEIDPDRCTGCGRCVAACHERCITLEVSGFRKYALLVSPQL-----------CNGCGACLAACPVRALT 65
Cdd:PRK07118  156 IHIENGLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKgkavkkvcevgCIGCGKCVKACPAGAIT 231
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 7-60 3.24e-06

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 39.54  E-value: 3.24e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737  7 FPEIDPDRCTGCGRCVAAC--HERCITLEVSGFRKYALLVSPQLCNGCGACLAACP 60
Cdd:pfam13237  1 KVVIDPDKCIGCGRCTAACpaGLTRVGAIVERLEGEAVRIGVWKCIGCGACVEACP 56
PorD_KorD TIGR02179
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number ...
 8-65 6.06e-06

2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.


Pssm-ID: 131234 [Multi-domain]  Cd Length: 78  Bit Score: 39.24  E-value: 6.06e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLEVSGFRKyallVSPQLCNGCGACLAACPVRALT 65
Cdd:TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEGGFVG----IDYDYCKGCGICANVCPVKAIE 73
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-65 1.04e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 39.69  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLEVSGFRKYALLVS----PQLCNGCGACLAACPVRALT 65
Cdd:cd10549    35 PEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKEKEaeidEEKCIGCGLCVKVCPVDAIT 96
flavo_MJ0208 TIGR02700
archaeoflavoprotein, MJ0208 family; This model describes one of two paralogous families of ...
 10-64 1.44e-05

archaeoflavoprotein, MJ0208 family; This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown. [Unknown function, General]


Pssm-ID: 131747 [Multi-domain]  Cd Length: 234  Bit Score: 40.24  E-value: 1.44e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITlEVSGFRKYALLVspqlCNGCGACLAACPVRAL 64
Cdd:TIGR02700 145 IDRKRCKGCGICVDACPRSAID-MVDGKAFIRLLK----CVGCGKCKEACPYNAI 194
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 8-61 1.55e-05

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 39.98  E-value: 1.55e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLEVSGFRKyallVSPQLCNGCGACLAACPV 61
Cdd:COG2878   132 PKGCEYGCIGCGDCIKACPFDAIVGAAKGMHT----VDEDKCTGCGLCVEACPV 181
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 15-63 1.82e-05

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.51  E-value: 1.82e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1625854737 15 CTGCGRCVAACHERCITLEVSGF--RKYALLVSPQLCNGCGACLAACPVRA 63
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEkkGTKTVVIDPERCVGCGACVAVCPTGA 51
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
8-33 1.86e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 39.84  E-value: 1.86e-05
                          10        20
                  ....*....|....*....|....*.
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1148   521 AEVNPALCKGCGTCAAACPSGAISLK 546
PRK09326 PRK09326
F420H2 dehydrogenase subunit F; Provisional
 10-61 2.33e-05

F420H2 dehydrogenase subunit F; Provisional


Pssm-ID: 181779 [Multi-domain]  Cd Length: 341  Bit Score: 39.82  E-value: 2.33e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITLE-VSGFRK------YALLVSPQLCNGCGACLAACPV 61
Cdd:PRK09326    9 IEYDVCTACGACEAVCPIGAITVDkKAEIRDpndlelYEKGAAPNVCEGCLTCSRICPV 67
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
10-65 2.46e-05

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 39.66  E-value: 2.46e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITlevsgfrkYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG0348   207 YDRGDCIDCGLCVKVCPMGIDI--------RKGEINQSECINCGRCIDACPKDAIR 254
PRK14028 PRK14028
pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
 6-64 2.76e-05

pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional


Pssm-ID: 172522 [Multi-domain]  Cd Length: 312  Bit Score: 39.60  E-value: 2.76e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737   6 DFPEIDPDRCTGCGRCVAACHERCIT---LEVSG-----FRKYALLVSPQLCNGCGACLAACPVRAL 64
Cdd:PRK14028  240 DKPVIDHSKCIMCRKCWLYCPDDAIIeawREAEGprgrkFRMKMIDFDYQYCKGCGVCAEVCPTGAI 306
PRK06991 PRK06991
electron transport complex subunit RsxB;
10-61 2.98e-05

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 39.39  E-value: 2.98e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITlevsGFRKYALLVSPQLCNGCGACLAACPV 61
Cdd:PRK06991   82 IDEQLCIGCTLCMQACPVDAIV----GAPKQMHTVLADLCTGCDLCVPPCPV 129
PRK08222 PRK08222
hydrogenase 4 subunit H; Validated
 1-65 5.79e-05

hydrogenase 4 subunit H; Validated


Pssm-ID: 181301 [Multi-domain]  Cd Length: 181  Bit Score: 38.19  E-value: 5.79e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1625854737   1 MSLPHDF---PEIDPDRCTGCGRCVAACHERCITLEV---SGFRKYALLVSPqlCNGCGACLAACPVRALT 65
Cdd:PRK08222   23 LEVSPGFrgkPDLMPSQCIACGACTCACPANALTIQTddqQNSRTWQLYLGR--CIYCGRCEEVCPTRAIQ 91
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 18-65 5.82e-05

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 37.99  E-value: 5.82e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1625854737  18 CGRCVAACHERCITLEVSGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:cd10564    88 CRSCQDACPTQAIRFRPRLGGIALPELDADACTGCGACVSVCPVGAIT 135
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
14-65 7.58e-05

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 37.94  E-value: 7.58e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737  14 RCTGCGRCVAACHERCITLEVS----GfRKYALLVSPQL--CNGCGACLAACPVRALT 65
Cdd:PRK05888   59 RCIACKLCAAICPADAITIEAAeredG-RRRTTRYDINFgrCIFCGFCEEACPTDAIV 115
vorD PRK09623
3-methyl-2-oxobutanoate dehydrogenase subunit delta;
8-65 7.88e-05

3-methyl-2-oxobutanoate dehydrogenase subunit delta;


Pssm-ID: 170016 [Multi-domain]  Cd Length: 105  Bit Score: 37.23  E-value: 7.88e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLEVSGFrkyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:PRK09623   46 PVVDESKCVKCYICWKFCPEPAIYIKEDGY----VAIDYDYCKGCGICANECPTKAIT 99
porD PRK09624
pyruvate ferredoxin oxidoreductase subunit delta; Reviewed
 8-64 8.64e-05

pyruvate ferredoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 170017 [Multi-domain]  Cd Length: 105  Bit Score: 36.93  E-value: 8.64e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLEVSGFRKYALlvspQLCNGCGACLAACPVRAL 64
Cdd:PRK09624   46 PEFNRDKCVRCYLCYIYCPEPAIYLDEEGYPVFDY----DYCKGCGICANECPTKAI 98
GlpC COG0247
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ...
 13-61 1.09e-04

Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];


Pssm-ID: 440017 [Multi-domain]  Cd Length: 420  Bit Score: 37.75  E-value: 1.09e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1625854737  13 DRCTGCGRCVAACHerciTLEVSGFRKY-----------------ALLVSPQ------LCNGCGACLAACPV 61
Cdd:COG0247    78 DACVGCGFCRAMCP----SYKATGDEKDsprgrinllrevlegelPLDLSEEvyevldLCLTCKACETACPS 145
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
10-65 1.11e-04

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 37.87  E-value: 1.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1625854737  10 IDPDRCTG--CGR-CVAAC-----HERCITLevSGFRKYALlVSPQLCNGCGACLAACPVRALT 65
Cdd:PRK13409    7 VDYDRCQPkkCNYeCIKYCpvvrtGEETIEI--DEDDGKPV-ISEELCIGCGICVKKCPFDAIS 67
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 10-65 1.33e-04

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 37.46  E-value: 1.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1625854737  10 IDPDRCTG--CGR-CVAAC-----HERCITL-EVSGFrkyaLLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG1245     7 VDRDRCQPkkCNYeCIKYCpvnrtGKEAIEIdEDDGK----PVISEELCIGCGICVKKCPFDAIS 67
PRK07569 PRK07569
bidirectional hydrogenase complex protein HoxU; Validated
 1-64 1.39e-04

bidirectional hydrogenase complex protein HoxU; Validated


Pssm-ID: 181037 [Multi-domain]  Cd Length: 234  Bit Score: 37.32  E-value: 1.39e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1625854737   1 MSLPHDFPEIDPDRCTGCGRCVAACH--ERCITLEVSGFRKYALLVS--------PQLCNGCGACLAACPVRAL 64
Cdd:PRK07569  134 VDISHPRFGIDHNRCVLCTRCVRVCDeiEGAHTWDVAGRGAKSRVITdlnqpwgtSETCTSCGKCVQACPTGAI 207
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-33 1.60e-04

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 35.48  E-value: 1.60e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 1625854737  1 MSLPHDFPEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG2768   28 ISIEDGKAVIDPEKCIGCGACIEVCPVGAIKIE 60
Fer4_21 pfam14697
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 10-61 2.46e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 434137 [Multi-domain]  Cd Length: 59  Bit Score: 34.95  E-value: 2.46e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1625854737 10 IDPDRCTGCGRCVAACHERCITLEVSGFRKYALLVSPqLCNGCGACLAACPV 61
Cdd:pfam14697  3 IDEDTCIGCGKCYIACPDTSHQAIVGDGKRHHTVIED-ECTGCNLCVSVCPV 53
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 4-33 2.63e-04

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 36.51  E-value: 2.63e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1625854737   4 PHDFPEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG2878   158 AKGMHTVDEDKCTGCGLCVEACPVDCIEMV 187
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
6-65 2.84e-04

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 36.17  E-value: 2.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1625854737   6 DFPEIDPDRCTGCGRCVAACHERCITLEVSGFRKYALLVspQLCNGC---GACLAACPVRALT 65
Cdd:COG1142    74 GAVVVDEEKCIGCGLCVLACPFGAITMVGEKSRAVAVKC--DLCGGReggPACVEACPTGALR 134
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
15-60 3.06e-04

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 36.45  E-value: 3.06e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1625854737  15 CTGCGRCVAACHERCITLEvSGFRKyallVSPQLCNGCGACLAACP 60
Cdd:PRK07118  141 CLGLGSCVAACPFDAIHIE-NGLPV----VDEDKCTGCGACVKACP 181
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 8-33 3.29e-04

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 34.70  E-value: 3.29e-04
                         10        20
                 ....*....|....*....|....*.
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1149   36 PVVDPDLCTGCGACVGVCPTGAITLE 61
PRK13795 PRK13795
hypothetical protein; Provisional
 40-65 3.42e-04

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 36.51  E-value: 3.42e-04
                          10        20
                  ....*....|....*....|....*.
gi 1625854737  40 YALLVSPQLCNGCGACLAACPVRALT 65
Cdd:PRK13795  574 ARLLRRAAECVGCGVCVGACPTGAIR 599
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 13-63 3.56e-04

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 36.38  E-value: 3.56e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625854737  13 DRCTGCGRCVAACHERCITLEVSG--FRKYallvspqlCNGCGACLAACPVRA 63
Cdd:NF038196  185 DKCIGCGICAKVCPVNNIEMEDGKpvWGHN--------CTHCLACIHRCPKEA 229
Fer4_9 pfam13187
4Fe-4S dicluster domain;
14-64 5.05e-04

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 34.07  E-value: 5.05e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1625854737 14 RCTGCGRCVAACHERCITLEVSGfRKYALLVSPQLCNGCGACLAACPVRAL 64
Cdd:pfam13187  1 KCTGCGACVAACPAGAIVPDLVG-QTIRGDIAGLACIGCGACVDACPRGAI 50
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-65 5.42e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 35.25  E-value: 5.42e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1625854737  10 IDPDRCTGCGRCVAAC---HERCITLEVSGFRKY----ALLVSPQLCNGCG--ACLAACPVRALT 65
Cdd:cd10550     3 VDPEKCTGCRTCELACslkHEGVFNPSLSRIRVVrfepEGLDVPVVCRQCEdaPCVEACPVGAIS 67
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-65 6.01e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 35.23  E-value: 6.01e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737  10 IDPDRCTGCGRCVAACHE-----------RCITLEVSGFRKYALLVSPQLCNGCG--ACLAACPVRALT 65
Cdd:cd16371     4 FDQERCIGCKACEIACKDkndlppgvnwrRVYEYEGGEFPEVFAYFLSMSCNHCEnpACVKVCPTGAIT 72
PRK05113 PRK05113
electron transport complex protein RnfB; Provisional
 10-61 6.58e-04

electron transport complex protein RnfB; Provisional


Pssm-ID: 235347 [Multi-domain]  Cd Length: 191  Bit Score: 35.31  E-value: 6.58e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITlevsGFRKYALLVSPQLCNGCGACLAACPV 61
Cdd:PRK05113  111 IDEDNCIGCTKCIQACPVDAIV----GATKAMHTVISDLCTGCDLCVAPCPT 158
FDH-O_like cd10560
beta subunit of formate dehydrogenase O (FDH-O) and similar proteins; This subfamily includes ...
 13-60 7.63e-04

beta subunit of formate dehydrogenase O (FDH-O) and similar proteins; This subfamily includes beta subunit of formate dehydrogenase family O (FDH-O), which is highly homologous to formate dehydrogenase N (FDH-N), a member of the DMSO reductase family. In E. coli three formate dehydrogenases are synthesized that are capable of oxidizing formate; Fdh-H, couples formate disproportionation to hydrogen and CO2, and is part of the cytoplasmically oriented formate hydrogenlyase complex, while FDH-N and FDH-O indicate their respective induction after growth with nitrate and oxygen. Little is known about FDH-O, although it shows formate oxidase activity during aerobic growth and is also synthesized during nitrate respiration, similar to FDH-N.


Pssm-ID: 319882 [Multi-domain]  Cd Length: 225  Bit Score: 35.44  E-value: 7.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1625854737  13 DRCTGCGRcvAACHERCITLEVSGFRKYALLVSPQLCNGCGACLAACP 60
Cdd:cd10560    76 DVCKHCTD--AGCLEACPTGAIFRTEFGTVYIQPDICNGCGYCVAACP 121
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 8-25 8.61e-04

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 34.91  E-value: 8.61e-04
                          10
                  ....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAAC 25
Cdd:cd10564   112 PELDADACTGCGACVSVC 129
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-62 8.88e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 34.92  E-value: 8.88e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1625854737  10 IDPDRC------TGCGRCVAAC--HERCITLEVSGFRKYallVSPQLCNGCGACLAACPVR 62
Cdd:cd16373    88 IDKDRClawqggTDCGVCVEACptEAIAIVLEDDVLRPV---VDEDKCVGCGLCEYVCPVE 145
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
9-25 1.10e-03

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 35.00  E-value: 1.10e-03
                          10
                  ....*....|....*..
gi 1625854737   9 EIDPDRCTGCGRCVAAC 25
Cdd:COG4624   116 EIDEEKCISCGQCVAVC 132
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 9-64 1.24e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 35.00  E-value: 1.24e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737   9 EIDPDRCTGCGRCVAACHERCITLEVSGFRKYALlvSPQLCNGCGACLAACPVRAL 64
Cdd:PRK12809   81 QLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDL--CNQRSSGTQACIEVCPTQAL 134
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 8-63 1.27e-03

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 34.62  E-value: 1.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737   8 PEIDPDRCTGCGRCVAACHERCITLE---VSGFRKYALlvSPQLCNGCGACLAACPVRA 63
Cdd:PRK12387   33 PEYNPQQCIGCAACVNACPSNALTVEtdlATGELAWEF--NLGRCIFCGRCEEVCPTAA 89
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-65 1.31e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 34.09  E-value: 1.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITLEVSgfRKYALLVSpqLCNGCGACLAACPVRALT 65
Cdd:cd10550    77 VDEDKCIGCGMCVEACPFGAIRVDPE--TGKAIKCD--LCGGDPACVKVCPTGALE 128
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
15-64 1.36e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 34.52  E-value: 1.36e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1625854737  15 CTGCGRCVAACHERCITLEvsGFRKYallVSPQLCNGCGACLAACPVRAL 64
Cdd:PRK07118  215 CIGCGKCVKACPAGAITME--NNLAV---IDQEKCTSCGKCVEKCPTKAI 259
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 7-33 1.49e-03

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 33.49  E-value: 1.49e-03
                         10        20
                 ....*....|....*....|....*..
gi 1625854737  7 FPEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1144   54 YYGIDYDYCKGCGICAEVCPVKAIEMV 80
napF TIGR00402
ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of ...
 14-64 1.74e-03

ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation. [Energy metabolism, Electron transport]


Pssm-ID: 273060 [Multi-domain]  Cd Length: 101  Bit Score: 33.38  E-value: 1.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1625854737  14 RCTGCGRCVAACHERCITLEVSGFRKYALLVSPqlCNGCGACLAACPVRAL 64
Cdd:TIGR00402  35 VCTRCGECASACENNILQLGQQGQPTVEFDNAE--CDFCGKCAEACPTNAF 83
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 4-33 1.77e-03

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 32.80  E-value: 1.77e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 1625854737  4 PHDFPEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1143   26 PGKVYVIDPDKCIGCGLCVEVCPTGAISMT 55
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 8-33 1.92e-03

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 32.72  E-value: 1.92e-03
                         10        20
                 ....*....|....*....|....*.
gi 1625854737  8 PEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG2221   39 LVIDEEKCIGCGACIRVCPTGAIKGE 64
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
8-65 2.58e-03

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 33.85  E-value: 2.58e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737   8 PEIDPDRCTGCGRCVAACHE-RCITLEVSGFRKYALLVSPQLCNGCGACLAACPVRALT 65
Cdd:COG4624    51 CPRCCLCCCCCCRCCVAISCiQVRGIIIIDKRGPSIIRDKEKCKNCYPCVRACPVKAIK 109
NapF COG1145
Ferredoxin [Energy production and conversion];
9-33 2.89e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 33.93  E-value: 2.89e-03
                          10        20
                  ....*....|....*....|....*
gi 1625854737   9 EIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1145   209 VVDPDKCIGCGACVKVCPVGAISLE 233
LutB COG1139
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ...
 36-62 3.22e-03

L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];


Pssm-ID: 440754 [Multi-domain]  Cd Length: 465  Bit Score: 33.55  E-value: 3.22e-03
                          10        20
                  ....*....|....*....|....*..
gi 1625854737  36 GFRKYALLvsPQLCNGCGACLAACPVR 62
Cdd:COG1139   352 GLEKAADL--PYASTLCGACTEVCPVK 376
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 13-65 3.27e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 33.57  E-value: 3.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625854737  13 DRCTGCGRCVAACHERCITLEVSGFRKYALLVSPQLCNGCG------ACLAACPVRALT 65
Cdd:PRK12769   85 QKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAgrengpACVENCPADALQ 143
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
10-65 3.82e-03

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 33.09  E-value: 3.82e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1625854737  10 IDPDRCTGCGRCVAACHERCITLEVSGFR------KYALLVSPQLCNGC--GACLAACPVRALT 65
Cdd:COG1142     7 ADPEKCIGCRTCEAACAVAHEGEEGEPFLprirvvRKAGVSAPVQCRHCedAPCAEVCPVGAIT 70
Fer4_6 pfam12837
4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to ...
 7-30 4.05e-03

4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 432822 [Multi-domain]  Cd Length: 24  Bit Score: 31.05  E-value: 4.05e-03
                         10        20
                 ....*....|....*....|....
gi 1625854737  7 FPEIDPDRCTGCGRCVAACHERCI 30
Cdd:pfam12837  1 VVEVDPDKCIGCGRCVVVCPYGAI 24
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 1-33 4.09e-03

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 31.94  E-value: 4.09e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 1625854737  1 MSLPHDFPEIDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG4231   39 IEEGDGKAVIDPDLCIGCGSCVQVCPVDAIKLE 71
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 46-65 5.50e-03

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 32.70  E-value: 5.50e-03
                          10        20
                  ....*....|....*....|
gi 1625854737  46 PQLCNGCGACLAACPVRALT 65
Cdd:PRK12387   37 PQQCIGCAACVNACPSNALT 56
PsrB cd10551
polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial ...
 10-25 5.53e-03

polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.


Pssm-ID: 319873 [Multi-domain]  Cd Length: 185  Bit Score: 32.89  E-value: 5.53e-03
                          10
                  ....*....|....*.
gi 1625854737  10 IDPDRCTGCGRCVAAC 25
Cdd:cd10551    80 VDYDKCIGCRYCMAAC 95
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 7-65 5.94e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 33.08  E-value: 5.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1625854737   7 FPEIDPDRCTGCGRCVAAC----HERCITLEVSGFRK------YALLVSPQLCNGC--GACLAACPVRALT 65
Cdd:PRK12809    4 FIAAEAAECIGCHACEIACavahNQENWPLSHSDFRPrihvvgKGQAANPVACHHCnnAPCVTACPVNALT 74
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-64 6.00e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 32.31  E-value: 6.00e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1625854737  10 IDPDRCTGCGRCVAACHERCItlevsgfRKYALLVSPQLCNGCGACLAACPVRAL 64
Cdd:cd16372    74 INKKLCVGCLMCVGFCPEGAM-------FKHEDYPEPFKCIACGICVKACPTGAL 121
GlpC COG0247
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ...
 49-65 7.50e-03

Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];


Pssm-ID: 440017 [Multi-domain]  Cd Length: 420  Bit Score: 32.74  E-value: 7.50e-03
                          10
                  ....*....|....*..
gi 1625854737  49 CNGCGACLAACPVRALT 65
Cdd:COG0247    80 CVGCGFCRAMCPSYKAT 96
PRK08764 PRK08764
Rnf electron transport complex subunit RnfB;
15-61 7.70e-03

Rnf electron transport complex subunit RnfB;


Pssm-ID: 181550 [Multi-domain]  Cd Length: 135  Bit Score: 32.20  E-value: 7.70e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1625854737  15 CTGCGRCVAACHERCITlevsGFRKYALLVSPQLCNGCGACLAACPV 61
Cdd:PRK08764   87 CIGCTKCIQACPVDAIV----GGAKHMHTVIAPLCTGCELCVPACPV 129
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 9-65 8.00e-03

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 31.98  E-value: 8.00e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1625854737   9 EIDPDRCTGCGRCVAACHERCITLEvsgfrkyALLVSPQLCNGCG---------ACLAACPVRALT 65
Cdd:cd04410    76 LIDEDKCIGCGSCVEACPYGAIVFD-------PEPGKAVKCDLCGdrldeglepACVKACPTGALT 134
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 8-25 8.63e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 32.23  E-value: 8.63e-03
                          10
                  ....*....|....*...
gi 1625854737   8 PEIDPDRCTGCGRCVAAC 25
Cdd:cd16373   125 PVVDEDKCVGCGLCEYVC 142
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 10-65 9.23e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 32.15  E-value: 9.23e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1625854737  10 IDPDRCTGCGRCVAAC--HERCITLEVSGFRKyallvspqlCNGCG---------ACLAACPVRALT 65
Cdd:cd16371    81 VDQDKCIGCGYCVWACpyGAPQYNPETGKMDK---------CDMCVdrldegekpACVAACPTRALD 138
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 10-33 9.48e-03

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 30.83  E-value: 9.48e-03
                         10        20
                 ....*....|....*....|....
gi 1625854737 10 IDPDRCTGCGRCVAACHERCITLE 33
Cdd:COG1146   37 INPEECIGCGACELVCPVGAITVE 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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