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Conserved domains on  [gi|1624160489|gb|THU62842|]
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hypothetical protein C4D60_Mb01t09410 [Musa balbisiana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1319 pfam07028
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 256-364 9.50e-63

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


:

Pssm-ID: 369174  Cd Length: 109  Bit Score: 196.28  E-value: 9.50e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624160489 256 DYLNLAETTKPTRKELAHNISVIYDRTCLSSRVNLRNFKLLLEENHNLQQRIKKLKSSVKTLSSLFIENKPLTQSEVQKL 335
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1624160489 336 VLEISKQPKFIEEEALWLSQNLDQKLQRI 364
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
PLN02440 super family cl30419
amidophosphoribosyltransferase
 1-77 4.17e-34

amidophosphoribosyltransferase


The actual alignment was detected with superfamily member PLN02440:

Pssm-ID: 215241 [Multi-domain]  Cd Length: 479  Bit Score: 131.34  E-value: 4.17e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYPVLPRE 77
Cdd:PLN02440  373 MRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIGCDSLAFLPLEDLKKSLGEESPRFCYACFSGDYPVLPKR 449
 
Name Accession Description Interval E-value
DUF1319 pfam07028
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 256-364 9.50e-63

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


Pssm-ID: 369174  Cd Length: 109  Bit Score: 196.28  E-value: 9.50e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624160489 256 DYLNLAETTKPTRKELAHNISVIYDRTCLSSRVNLRNFKLLLEENHNLQQRIKKLKSSVKTLSSLFIENKPLTQSEVQKL 335
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1624160489 336 VLEISKQPKFIEEEALWLSQNLDQKLQRI 364
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
PLN02440 PLN02440
amidophosphoribosyltransferase
 1-77 4.17e-34

amidophosphoribosyltransferase


Pssm-ID: 215241 [Multi-domain]  Cd Length: 479  Bit Score: 131.34  E-value: 4.17e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYPVLPRE 77
Cdd:PLN02440  373 MRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIGCDSLAFLPLEDLKKSLGEESPRFCYACFSGDYPVLPKR 449
PurF COG0034
Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; ...
 1-73 1.59e-31

Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; Glutamine phosphoribosylpyrophosphate amidotransferase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439804 [Multi-domain]  Cd Length: 464  Bit Score: 123.98  E-value: 1.59e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYPV 73
Cdd:COG0034   378 FRIASPPIRYPCYYGIDTPTREELIAANRSVEEIREYIGADSLGYLSLEGLIEAVGEPIEGFCTACFTGDYPT 450
purF TIGR01134
amidophosphoribosyltransferase; Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) ...
 1-72 6.37e-24

amidophosphoribosyltransferase; Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273461 [Multi-domain]  Cd Length: 442  Bit Score: 102.40  E-value: 6.37e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEgVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYP 72
Cdd:TIGR01134 372 VRIASPPIRYPCYYGIDMPTREELIAARRTVE-EIRKIGADSLAYLSLEGLKEAVGNPESDLCLACFTGEYP 442
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 299-375 3.29e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624160489 299 ENHNLQQRIKKLKSSVKTL----SSLFIENKPLTqSEVQKLVLEISKQPKfieeealwLSQNLDQKLQRIEILLSKIEKQ 374
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLkkenQSYKQEIKNLE-SQINDLESKIQNQEK--------LNQQKDEQIKKLQQEKELLEKE 427


                  .
gi 1624160489 375 I 375
Cdd:TIGR04523 428 I 428
 
Name Accession Description Interval E-value
DUF1319 pfam07028
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 256-364 9.50e-63

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


Pssm-ID: 369174  Cd Length: 109  Bit Score: 196.28  E-value: 9.50e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624160489 256 DYLNLAETTKPTRKELAHNISVIYDRTCLSSRVNLRNFKLLLEENHNLQQRIKKLKSSVKTLSSLFIENKPLTQSEVQKL 335
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1624160489 336 VLEISKQPKFIEEEALWLSQNLDQKLQRI 364
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
PLN02440 PLN02440
amidophosphoribosyltransferase
 1-77 4.17e-34

amidophosphoribosyltransferase


Pssm-ID: 215241 [Multi-domain]  Cd Length: 479  Bit Score: 131.34  E-value: 4.17e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYPVLPRE 77
Cdd:PLN02440  373 MRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIGCDSLAFLPLEDLKKSLGEESPRFCYACFSGDYPVLPKR 449
PurF COG0034
Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; ...
 1-73 1.59e-31

Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; Glutamine phosphoribosylpyrophosphate amidotransferase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439804 [Multi-domain]  Cd Length: 464  Bit Score: 123.98  E-value: 1.59e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYPV 73
Cdd:COG0034   378 FRIASPPIRYPCYYGIDTPTREELIAANRSVEEIREYIGADSLGYLSLEGLIEAVGEPIEGFCTACFTGDYPT 450
purF TIGR01134
amidophosphoribosyltransferase; Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) ...
 1-72 6.37e-24

amidophosphoribosyltransferase; Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273461 [Multi-domain]  Cd Length: 442  Bit Score: 102.40  E-value: 6.37e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEgVRRAIGSDSLAFLSLESLRVAFGKEGHMFCDACFTRRYP 72
Cdd:TIGR01134 372 VRIASPPIRYPCYYGIDMPTREELIAARRTVE-EIRKIGADSLAYLSLEGLKEAVGNPESDLCLACFTGEYP 442
PRK05793 PRK05793
amidophosphoribosyltransferase; Provisional
 1-77 4.48e-19

amidophosphoribosyltransferase; Provisional


Pssm-ID: 235611 [Multi-domain]  Cd Length: 469  Bit Score: 88.17  E-value: 4.48e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1624160489   1 MRIASPPIISSCYYGVDTPRAEELISNRLDVEGVRRAIGSDSLAFLSLESLRVAFGKEGHmFCDACFTRRYPV-LPRE 77
Cdd:PRK05793  386 FRVSSPPVKYPCYFGIDTPYRKELIGANMSVEEIREMIGADSLGYLSIEGLLESLNGDKG-FCLGCFNGVYPVsAPKE 462
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 299-375 3.29e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624160489 299 ENHNLQQRIKKLKSSVKTL----SSLFIENKPLTqSEVQKLVLEISKQPKfieeealwLSQNLDQKLQRIEILLSKIEKQ 374
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLkkenQSYKQEIKNLE-SQINDLESKIQNQEK--------LNQQKDEQIKKLQQEKELLEKE 427


                  .
gi 1624160489 375 I 375
Cdd:TIGR04523 428 I 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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