electron transport complex subunit A is a component of a membrane complex involved in functions such as maintaining the reduced state of SoxR (RsxA) or transfering electrons to nitrogenase (RnfA)
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
1-193
2.41e-106
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443695 Cd Length: 193 Bit Score: 302.81 E-value: 2.41e-106
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in ...
2-191
1.36e-85
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport]
Pssm-ID: 130998 Cd Length: 190 Bit Score: 250.35 E-value: 1.36e-85
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
4-190
1.38e-59
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 184.16 E-value: 1.38e-59
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
1-193
2.41e-106
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443695 Cd Length: 193 Bit Score: 302.81 E-value: 2.41e-106
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in ...
2-191
1.36e-85
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport]
Pssm-ID: 130998 Cd Length: 190 Bit Score: 250.35 E-value: 1.36e-85
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
4-190
1.38e-59
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 184.16 E-value: 1.38e-59
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and ...
1-190
1.62e-58
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase
Pssm-ID: 441811 Cd Length: 202 Bit Score: 181.96 E-value: 1.62e-58
NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; This model represents the NqrE ...
3-190
4.04e-47
NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130995 Cd Length: 200 Bit Score: 152.99 E-value: 4.04e-47
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and ...
15-156
3.25e-28
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443698 Cd Length: 209 Bit Score: 104.83 E-value: 3.25e-28
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in ...
15-158
1.50e-24
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit. [Energy metabolism, Electron transport]
Pssm-ID: 162619 Cd Length: 196 Bit Score: 94.72 E-value: 1.50e-24
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
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