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Conserved domains on  [gi|1616591271|ref|NP_001356637|]
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zinc finger Y-chromosomal protein isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 45-329 1.84e-145

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


:

Pssm-ID: 461400  Cd Length: 328  Bit Score: 427.74  E-value: 1.84e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271  45 DVVIEeDVQCSDILEEADVSENVIIPEQVLDSDVTEEVSLPHCTVPDDVLASDITSTSMSMPEHVLTSESMHVCDIGHVE 124
Cdd:pfam04704   1 DVVIE-DVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 125 HMVHDSvvEAEIITDPLTSDIVSEEVLVADCAPEAVIDASGISVDQQDNDKASCEDYLMISLDDAGKIEHDGSTGVTIDA 204
Cdd:pfam04704  80 HVIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLDDGEKLDHIGSTPLTMSA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 205 ESEMDPCKVDSTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRVPREKMVYMTVNDSQQEDEDLS 284
Cdd:pfam04704 158 EVEQDSSKLDGFCPEVIKVYIFKADPGEDDLGGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEDEDLN 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 285 ----------------------------------------------NNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 318
Cdd:pfam04704 238 vaeiadevymevivgeedaavaheqqlddsevnktfmpiawaaaygNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 1616591271 319 KKRRPDSRQYQ 329
Cdd:pfam04704 318 KKRRGESRQYQ 328
zf-H2C2_2 pfam13465
Zinc-finger double domain;
481-505 7.70e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 7.70e-05
                          10        20
                  ....*....|....*....|....*
gi 1616591271 481 ELRKHMRIHTGEKPYQCQYCEYRSA 505
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
462-599 3.21e-04

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 43.92  E-value: 3.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 462 SKNFPHICVECGKGFRHPSELRKHMRIHTGEKPYQCQYCEYRSADSSNLKTHI-KTKHSKEMPFKCDICLLTFSDTKEVQ 540
Cdd:COG5048    29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRhLRTHHNNPSDLNSKSLPLSNSKASSS 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 541 QHTLVHQESKTHQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMC-EKGFHRPSELKKH 599
Cdd:COG5048   109 SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLH 168
zf-H2C2_2 pfam13465
Zinc-finger double domain;
652-676 1.29e-03

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.58  E-value: 1.29e-03
                          10        20
                  ....*....|....*....|....*
gi 1616591271 652 ELKKHMKTHSGRKVYQCEYCEYSTT 676
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
ROS_MUCR super family cl19880
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 346-368 3.78e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


The actual alignment was detected with superfamily member pfam05443:

Pssm-ID: 473244  Cd Length: 122  Bit Score: 37.83  E-value: 3.78e-03
                          10        20
                  ....*....|....*....|....*.
gi 1616591271 346 CMICGKKFKSrgfLKRHMKNH---PE 368
Cdd:pfam05443  67 CLEDGKPFKT---LKRHLTAHgltPE 89
COG5048 super family cl34881
FOG: Zn-finger [General function prediction only];
340-515 8.66e-03

FOG: Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5048:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 39.29  E-value: 8.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 340 PLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYHCTDCDYTTnKKISLHNHLESHKLTS-KAEKAIEC-DECGKHFS 417
Cdd:COG5048   286 FSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCG-KLFSRNDALKRHILLHtSISPAKEKlLNSSSKFS 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 418 HAGALFTHKMVHKEKGANKMHKckfceYETAEQGLL----NRHLLAVH---SKNFPHICVE---CGKGFRHPSELRKHMR 487
Cdd:COG5048   365 PLLNNEPPQSLQQYKDLKNDKK-----SETLSNSCIrnfkRDSNLSLHiitHLSFRPYNCKnppCSKSFNRHYNLIPHKK 439

                         170       180
                  ....*....|....*....|....*...
gi 1616591271 488 IHTGEKPYQCQyCEYRSADSSNLKTHIK 515
Cdd:COG5048   440 IHTNHAPLLCS-ILKSFRRDLDLSNHGK 466
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 638-660 8.86e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 8.86e-03
                          10        20
                  ....*....|....*....|...
gi 1616591271 638 FRCKRCRKGFRQQNELKKHMKTH 660
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 45-329 1.84e-145

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 427.74  E-value: 1.84e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271  45 DVVIEeDVQCSDILEEADVSENVIIPEQVLDSDVTEEVSLPHCTVPDDVLASDITSTSMSMPEHVLTSESMHVCDIGHVE 124
Cdd:pfam04704   1 DVVIE-DVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 125 HMVHDSvvEAEIITDPLTSDIVSEEVLVADCAPEAVIDASGISVDQQDNDKASCEDYLMISLDDAGKIEHDGSTGVTIDA 204
Cdd:pfam04704  80 HVIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLDDGEKLDHIGSTPLTMSA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 205 ESEMDPCKVDSTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRVPREKMVYMTVNDSQQEDEDLS 284
Cdd:pfam04704 158 EVEQDSSKLDGFCPEVIKVYIFKADPGEDDLGGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEDEDLN 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 285 ----------------------------------------------NNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 318
Cdd:pfam04704 238 vaeiadevymevivgeedaavaheqqlddsevnktfmpiawaaaygNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 1616591271 319 KKRRPDSRQYQ 329
Cdd:pfam04704 318 KKRRGESRQYQ 328
zf-H2C2_2 pfam13465
Zinc-finger double domain;
481-505 7.70e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 7.70e-05
                          10        20
                  ....*....|....*....|....*
gi 1616591271 481 ELRKHMRIHTGEKPYQCQYCEYRSA 505
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
462-599 3.21e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 43.92  E-value: 3.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 462 SKNFPHICVECGKGFRHPSELRKHMRIHTGEKPYQCQYCEYRSADSSNLKTHI-KTKHSKEMPFKCDICLLTFSDTKEVQ 540
Cdd:COG5048    29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRhLRTHHNNPSDLNSKSLPLSNSKASSS 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 541 QHTLVHQESKTHQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMC-EKGFHRPSELKKH 599
Cdd:COG5048   109 SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLH 168
zf-H2C2_2 pfam13465
Zinc-finger double domain;
652-676 1.29e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.58  E-value: 1.29e-03
                          10        20
                  ....*....|....*....|....*
gi 1616591271 652 ELKKHMKTHSGRKVYQCEYCEYSTT 676
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 467-489 2.75e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 2.75e-03
                          10        20
                  ....*....|....*....|...
gi 1616591271 467 HICVECGKGFRHPSELRKHMRIH 489
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
ROS_MUCR pfam05443
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 346-368 3.78e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


Pssm-ID: 428475  Cd Length: 122  Bit Score: 37.83  E-value: 3.78e-03
                          10        20
                  ....*....|....*....|....*.
gi 1616591271 346 CMICGKKFKSrgfLKRHMKNH---PE 368
Cdd:pfam05443  67 CLEDGKPFKT---LKRHLTAHgltPE 89
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
340-515 8.66e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 39.29  E-value: 8.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 340 PLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYHCTDCDYTTnKKISLHNHLESHKLTS-KAEKAIEC-DECGKHFS 417
Cdd:COG5048   286 FSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCG-KLFSRNDALKRHILLHtSISPAKEKlLNSSSKFS 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 418 HAGALFTHKMVHKEKGANKMHKckfceYETAEQGLL----NRHLLAVH---SKNFPHICVE---CGKGFRHPSELRKHMR 487
Cdd:COG5048   365 PLLNNEPPQSLQQYKDLKNDKK-----SETLSNSCIrnfkRDSNLSLHiitHLSFRPYNCKnppCSKSFNRHYNLIPHKK 439

                         170       180
                  ....*....|....*....|....*...
gi 1616591271 488 IHTGEKPYQCQyCEYRSADSSNLKTHIK 515
Cdd:COG5048   440 IHTNHAPLLCS-ILKSFRRDLDLSNHGK 466
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 638-660 8.86e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 8.86e-03
                          10        20
                  ....*....|....*....|...
gi 1616591271 638 FRCKRCRKGFRQQNELKKHMKTH 660
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 45-329 1.84e-145

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 427.74  E-value: 1.84e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271  45 DVVIEeDVQCSDILEEADVSENVIIPEQVLDSDVTEEVSLPHCTVPDDVLASDITSTSMSMPEHVLTSESMHVCDIGHVE 124
Cdd:pfam04704   1 DVVIE-DVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 125 HMVHDSvvEAEIITDPLTSDIVSEEVLVADCAPEAVIDASGISVDQQDNDKASCEDYLMISLDDAGKIEHDGSTGVTIDA 204
Cdd:pfam04704  80 HVIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLDDGEKLDHIGSTPLTMSA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 205 ESEMDPCKVDSTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRVPREKMVYMTVNDSQQEDEDLS 284
Cdd:pfam04704 158 EVEQDSSKLDGFCPEVIKVYIFKADPGEDDLGGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEDEDLN 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 285 ----------------------------------------------NNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 318
Cdd:pfam04704 238 vaeiadevymevivgeedaavaheqqlddsevnktfmpiawaaaygNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 1616591271 319 KKRRPDSRQYQ 329
Cdd:pfam04704 318 KKRRGESRQYQ 328
zf-H2C2_2 pfam13465
Zinc-finger double domain;
481-505 7.70e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 7.70e-05
                          10        20
                  ....*....|....*....|....*
gi 1616591271 481 ELRKHMRIHTGEKPYQCQYCEYRSA 505
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
462-599 3.21e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 43.92  E-value: 3.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 462 SKNFPHICVECGKGFRHPSELRKHMRIHTGEKPYQCQYCEYRSADSSNLKTHI-KTKHSKEMPFKCDICLLTFSDTKEVQ 540
Cdd:COG5048    29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRhLRTHHNNPSDLNSKSLPLSNSKASSS 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 541 QHTLVHQESKTHQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMC-EKGFHRPSELKKH 599
Cdd:COG5048   109 SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLH 168
zf-H2C2_2 pfam13465
Zinc-finger double domain;
652-676 1.29e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.58  E-value: 1.29e-03
                          10        20
                  ....*....|....*....|....*
gi 1616591271 652 ELKKHMKTHSGRKVYQCEYCEYSTT 676
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 467-489 2.75e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 2.75e-03
                          10        20
                  ....*....|....*....|...
gi 1616591271 467 HICVECGKGFRHPSELRKHMRIH 489
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
ROS_MUCR pfam05443
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 346-368 3.78e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


Pssm-ID: 428475  Cd Length: 122  Bit Score: 37.83  E-value: 3.78e-03
                          10        20
                  ....*....|....*....|....*.
gi 1616591271 346 CMICGKKFKSrgfLKRHMKNH---PE 368
Cdd:pfam05443  67 CLEDGKPFKT---LKRHLTAHgltPE 89
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
340-515 8.66e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 39.29  E-value: 8.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 340 PLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYHCTDCDYTTnKKISLHNHLESHKLTS-KAEKAIEC-DECGKHFS 417
Cdd:COG5048   286 FSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCG-KLFSRNDALKRHILLHtSISPAKEKlLNSSSKFS 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616591271 418 HAGALFTHKMVHKEKGANKMHKckfceYETAEQGLL----NRHLLAVH---SKNFPHICVE---CGKGFRHPSELRKHMR 487
Cdd:COG5048   365 PLLNNEPPQSLQQYKDLKNDKK-----SETLSNSCIrnfkRDSNLSLHiitHLSFRPYNCKnppCSKSFNRHYNLIPHKK 439

                         170       180
                  ....*....|....*....|....*...
gi 1616591271 488 IHTGEKPYQCQyCEYRSADSSNLKTHIK 515
Cdd:COG5048   440 IHTNHAPLLCS-ILKSFRRDLDLSNHGK 466
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 638-660 8.86e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 8.86e-03
                          10        20
                  ....*....|....*....|...
gi 1616591271 638 FRCKRCRKGFRQQNELKKHMKTH 660
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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