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Conserved domains on  [gi|1608348115|gb|QBX34193|]
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ATP-binding cassette domain-containing protein [Paracoccus liaowanqingii]

Protein Classification

ABC transporter ATP-binding protein( domain architecture ID 11438366)

ABC transporter ATP-binding protein is the ATPase catalytic subunit of an ABC transporter complex responsible for coupling the energy of ATP hydrolysis to the transport of one or more from a variety of substrates

CATH:  3.40.50.300
PubMed:  25750732|24638992
SCOP:  4003976
TCDB:  3.A.1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MlaF COG1127
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...
1-231 4.19e-119

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440744 [Multi-domain]  Cd Length: 241  Bit Score: 339.26  E-value: 4.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFLAGF 77
Cdd:COG1127     5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitgLSEKELYELRRRI 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG1127    85 GMLFQGGALFDSLTVFENVAFPLREhtDLSEAEIRELVLEKLELVGL-PGAADKMPSELSGGMRKRVALARALALDPEIL 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAA--PALAAFL 231
Cdd:COG1127   164 LYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASddPWVRQFL 241
 
Name Accession Description Interval E-value
MlaF COG1127
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...
1-231 4.19e-119

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440744 [Multi-domain]  Cd Length: 241  Bit Score: 339.26  E-value: 4.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFLAGF 77
Cdd:COG1127     5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitgLSEKELYELRRRI 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG1127    85 GMLFQGGALFDSLTVFENVAFPLREhtDLSEAEIRELVLEKLELVGL-PGAADKMPSELSGGMRKRVALARALALDPEIL 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAA--PALAAFL 231
Cdd:COG1127   164 LYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASddPWVRQFL 241
ABC_Org_Solvent_Resistant cd03261
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...
2-223 7.88e-100

ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213228 [Multi-domain]  Cd Length: 235  Bit Score: 290.17  E-value: 7.88e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---GFG 78
Cdd:cd03261     1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRlrrRMG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:cd03261    81 MLFQSGALFDSLTVFENVAFPLREhtRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPELLL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:cd03261   160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
glnQ PRK09493
glutamine ABC transporter ATP-binding protein GlnQ;
1-231 3.07e-52

glutamine ABC transporter ATP-binding protein GlnQ;


Pssm-ID: 181906 [Multi-domain]  Cd Length: 240  Bit Score: 169.50  E-value: 3.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-RPLDRAARARFL-AGFG 78
Cdd:PRK09493    1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDERLIrQEAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:PRK09493   81 MVFQQFYLFPHLTALENVMFGPLRvrGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFL 231
Cdd:PRK09493  160 FDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPsqrLQEFL 236
PhnT2 TIGR03265
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ...
2-233 3.23e-46

putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274496 [Multi-domain]  Cd Length: 353  Bit Score: 157.12  E-value: 3.23e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflAGFGMLF 81
Cdd:TIGR03265   5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK--RDYGIVF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:TIGR03265  83 QSYALFPNLTVADNIAYGLKnRGMGRAEVAERVAELLDLVGL-PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 161 TTGLDpirARAIDAL---IRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG-PVAGMD--AAPALAAFLGR 233
Cdd:TIGR03265 162 LSALD---ARVREHLrteIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGtPQEIYRhpATPFVADFVGE 237
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
17-162 1.13e-37

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 128.92  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSLSVWQNV 96
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  97 AFRLR----QRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:pfam00005  81 RLGLLlkglSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
AztA NF040873
zinc ABC transporter ATP-binding protein AztA;
11-206 6.07e-23

zinc ABC transporter ATP-binding protein AztA;


Pssm-ID: 468810 [Multi-domain]  Cd Length: 191  Bit Score: 91.91  E-value: 6.07e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  11 FGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIlwqgrpldRAARARFLAgfgMLFQGAALFDSL 90
Cdd:NF040873    2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------RRAGGARVA---YVPQRSEVPDSL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 --SVWQNVAF-----RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTG 163
Cdd:NF040873   71 plTVRDLVAMgrwarRGLWRRLTRDDRAAVDDALERVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1608348115 164 LDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVAL 206
Cdd:NF040873  150 LDAESRERIIALLAEEH-ARGATVVVVTHDLELVRRADPCVLL 191
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
2-218 5.54e-21

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 90.18  E-value: 5.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTG--KSVLLKCILGleaPEAGRILWQGRP--LDRAARARFLAGF 77
Cdd:NF000106   14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPWRF*TwcANRRALRRTIG*H 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAAlfDSLSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF000106   91 RPVR*GRR--ESFSGRENLYMIGR*lDLSRKDARARADELLERFSL-TEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLY 167
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:NF000106  168 LDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKV 228
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
2-219 5.35e-15

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 74.01  E-value: 5.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARFLAGFGML 80
Cdd:NF033858    2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMaDARHRRAVCPRIAYM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAA--LFDSLSVWQNVAF--RLRQRMSDDRARGIAlDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF033858   82 PQGLGknLYPTLSVFENLDFfgRLFGQDAAERRRRID-ELLRATGLAP-FADRPAGKLSGGMKQKLGLCCALIHDPDLLI 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTET-GATALTITHDMASVARIgDRVALLQGGRIVHDGPVA 219
Cdd:NF033858  160 LDEPTTGVDPLSRRQFWELIDRIRAERpGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPA 222
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
2-232 2.30e-14

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 72.08  E-value: 2.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARFlagfG 78
Cdd:NF033858  267 IEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVdagDIATRRRV----G 342
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAF--RLRQRMSDDRARGIAlDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF033858  343 YMSQAFSLYGELTVRQNLELhaRLFHLPAAEIAARVA-EMLERFDLA-DVADALPDSLPLGIRQRLSLAVAVIHKPELLI 420
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 157 FDEPTTGLDPIrARaiDALIRGIVT---ETGATALTITHDMASVARIgDRVALLQGGRI-VHDGPVAGMDA--APAL-AA 229
Cdd:NF033858  421 LDEPTSGVDPV-AR--DMFWRLLIElsrEDGVTIFISTHFMNEAERC-DRISLMHAGRVlASDTPAALVAArgAATLeEA 496

                  ...
gi 1608348115 230 FLG 232
Cdd:NF033858  497 FIA 499
GguA NF040905
sugar ABC transporter ATP-binding protein;
1-218 5.58e-12

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 64.81  E-value: 5.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEaPEA---GRILWQGRPLD----RAARARf 73
Cdd:NF040905    1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHGsyeGEILFDGEVCRfkdiRDSEAL- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 laGFGMLFQGAALFDSLSVWQNVaFrlrqrMSDDRAR-GI---------ALDKLARVGLGpETADLMPAELSGGMAKRAG 143
Cdd:NF040905   79 --GIVIIHQELALIPYLSIAENI-F-----LGNERAKrGVidwnetnrrARELLAKVGLD-ESPDTLVTDIGVGKQQLVE 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 144 LARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIV-----HDGPV 218
Cdd:NF040905  150 IAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIetldcRADEV 228
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
26-209 2.50e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 40.05  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   26 QGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILwqgrpldraararflagfgmlfqgaalfdslsvwqnvafrlrqRMS 105
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------------------------------------YID 37
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  106 DDRARGIALDKLARVGLGPEtadlmPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVT---- 181
Cdd:smart00382  38 GEDILEEVLDQLLLIIVGGK-----KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLlllk 112
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1608348115  182 -ETGATALTITH------DMASVARIGDRVALLQG 209
Cdd:smart00382 113 sEKNLTVILTTNdekdlgPALLRRRFDRRIVLLLI 147
 
Name Accession Description Interval E-value
MlaF COG1127
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...
1-231 4.19e-119

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440744 [Multi-domain]  Cd Length: 241  Bit Score: 339.26  E-value: 4.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFLAGF 77
Cdd:COG1127     5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitgLSEKELYELRRRI 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG1127    85 GMLFQGGALFDSLTVFENVAFPLREhtDLSEAEIRELVLEKLELVGL-PGAADKMPSELSGGMRKRVALARALALDPEIL 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAA--PALAAFL 231
Cdd:COG1127   164 LYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASddPWVRQFL 241
ABC_Org_Solvent_Resistant cd03261
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...
2-223 7.88e-100

ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213228 [Multi-domain]  Cd Length: 235  Bit Score: 290.17  E-value: 7.88e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---GFG 78
Cdd:cd03261     1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRlrrRMG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:cd03261    81 MLFQSGALFDSLTVFENVAFPLREhtRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPELLL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:cd03261   160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
GlnQ COG1126
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...
1-233 6.63e-67

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440743 [Multi-domain]  Cd Length: 239  Bit Score: 206.77  E-value: 6.63e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD------RAARARFl 74
Cdd:COG1126     1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskkdiNKLRRKV- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 agfGMLFQGAALFDSLSVWQNVAFRLR--QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:COG1126    80 ---GMVFQQFNLFPHLTVLENVTLAPIkvKKMSKAEAEERAMELLERVGLA-DKADAYPAQLSGGQQQRVAIARALAMEP 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAA 229
Cdd:COG1126   156 KVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQherTRA 234

                  ....
gi 1608348115 230 FLGR 233
Cdd:COG1126   235 FLSK 238
TauB COG1116
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ...
1-215 2.99e-63

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440733 [Multi-domain]  Cd Length: 260  Bit Score: 198.00  E-value: 2.99e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflag 76
Cdd:COG1116     7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR---- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 fGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG1116    83 -GVVFQEPALLPWLTVLDNVALGLElRGVPKAERRERARELLELVGLA-GFEDAYPHQLSGGMRQRVAIARALANDPEVL 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG--GRIVHD 215
Cdd:COG1116   161 LMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIVEE 222
ABC_Carb_Solutes_like cd03259
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ...
2-216 1.06e-62

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213226 [Multi-domain]  Cd Length: 213  Bit Score: 195.05  E-value: 1.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflaGFGML 80
Cdd:cd03259     1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVtGVPPERR---NIGMV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGPEtADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03259    78 FQDYALFPHLTVAENIAFGLKlRGVPKAEIRARVRELLELVGLEGL-LNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03259   157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
ABC_NikE_OppD_transporters cd03257
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...
1-216 5.99e-62

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.


Pssm-ID: 213224 [Multi-domain]  Cd Length: 228  Bit Score: 193.88  E-value: 5.99e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAG 76
Cdd:cd03257     1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 ---FGMLFQ--GAALFDSLSVWQNVA--FRLRQRMSDDRARG-IALDKLARVGLGPETADLMPAELSGGMAKRAGLARAI 148
Cdd:cd03257    81 rkeIQMVFQdpMSSLNPRMTIGEQIAepLRIHGKLSKKEARKeAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03257   161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
ABC_NrtD_SsuB_transporters cd03293
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ...
2-218 8.24e-62

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213260 [Multi-domain]  Cd Length: 220  Bit Score: 193.07  E-value: 8.24e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflagf 77
Cdd:cd03293     1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR----- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:cd03293    76 GYVFQQDALLPWLTVLDNVALGLElQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLL 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG--GRIVHDGPV 218
Cdd:cd03293   155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAEVEV 218
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
1-219 2.64e-61

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 200.51  E-value: 2.64e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARAR 72
Cdd:COG1123   260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDltkLSRRSLRE 339
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FLAGFGMLFQG--AALFDSLSVWQNVAF--RLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAI 148
Cdd:COG1123   340 LRRRVQMVFQDpySSLNPRMTVGDIIAEplRLHGLLSRAERRERVAELLERVGLPPDLADRYPHELSGGQRQRVAIARAL 419
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1123   420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTE 490
DppF COG1124
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
1-225 2.33e-60

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440741 [Multi-domain]  Cd Length: 248  Bit Score: 190.40  E-value: 2.33e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGA----TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAG 76
Cdd:COG1124     1 MLEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQ--GAALFDSLSVWQNVAFRLRQRMSDDRARGIAlDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:COG1124    81 VQMVFQdpYASLHPRHTVDRILAEPLRIHGLPDREERIA-ELLEQVGLPPSFLDRYPHQLSGGQRQRVAIARALILEPEL 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:COG1124   160 LLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGP 230
PotA COG3842
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...
1-217 4.38e-60

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443052 [Multi-domain]  Cd Length: 353  Bit Score: 193.01  E-value: 4.38e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflaGFGM 79
Cdd:COG3842     5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVtGLPPEKR---NVGM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:COG3842    82 VFQDYALFPHLTVAENVAFGLRMRgVPKAEIRARVAELLELVGLE-GLADRYPHQLSGGQQQRVALARALAPEPRVLLLD 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:COG3842   161 EPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGT 219
CcmA COG1131
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
2-219 4.73e-60

ABC-type multidrug transport system, ATPase component [Defense mechanisms];


Pssm-ID: 440746 [Multi-domain]  Cd Length: 236  Bit Score: 189.12  E-value: 4.73e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARARFlagfG 78
Cdd:COG1131     1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARdpaEVRRRI----G 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAF--RLRqRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:COG1131    77 YVPQEPALYPDLTVRENLRFfaRLY-GLPRKEARERIDELLELFGLT-DAADRKVGTLSGGMKQRLGLALALLHDPELLI 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1131   155 LDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPD 216
LolD COG1136
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
1-215 8.40e-60

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440751 [Multi-domain]  Cd Length: 227  Bit Score: 188.33  E-value: 8.40e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARF 73
Cdd:COG1136     4 LLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDissLSERELARL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LAG-FGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADD 151
Cdd:COG1136    84 RRRhIGFVFQFFNLLPELTALENVALPLLlAGVSRKERRERARELLERVGLG-DRLDHRPSQLSGGQQQRVAIARALVNR 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMAsVARIGDRVALLQGGRIVHD 215
Cdd:COG1136   163 PKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPE-LAARADRVIRLRDGRIVSD 225
AbcC COG1135
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
1-219 8.51e-60

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440750 [Multi-domain]  Cd Length: 339  Bit Score: 191.83  E-value: 8.51e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAA 69
Cdd:COG1135     1 MIELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalserelRAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFlagfGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAI 148
Cdd:COG1135    81 RRKI----GMIFQHFNLLSSRTVAENVALPLEiAGVPKAEIRKRVAELLELVGLS-DKADAYPSQLSGGQKQRVGIARAL 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1135   156 ANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVL 226
ABC_MetN_methionine_transporter cd03258
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...
1-225 1.02e-59

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213225 [Multi-domain]  Cd Length: 233  Bit Score: 188.17  E-value: 1.02e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATR----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAA 69
Cdd:cd03258     1 MIELKNVSKVFGDTGgkvtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgkelRKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFlagfGMLFQGAALFDSLSVWQNVAFRLR---QRMSDDRARgiALDKLARVGLGpETADLMPAELSGGMAKRAGLAR 146
Cdd:cd03258    81 RRRI----GMIFQHFNLLSSRTVFENVALPLEiagVPKAEIEER--VLELLELVGLE-DKADAYPAQLSGGQKQRVGIAR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 147 AIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:cd03258   154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
ABC_HisP_GlnQ cd03262
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...
2-212 3.84e-58

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.


Pssm-ID: 213229 [Multi-domain]  Cd Length: 213  Bit Score: 183.50  E-value: 3.84e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARA--RFLAGFGM 79
Cdd:cd03262     1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNinELRQKVGM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:cd03262    81 VFQQFNLFPHLTVLENItlAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:cd03262   160 DEPTSALDPELVGEVLDVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
DppD COG0444
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
1-219 6.75e-56

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440213 [Multi-domain]  Cd Length: 320  Bit Score: 181.02  E-value: 6.75e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA---GRILWQGRPLDRAARARF 73
Cdd:COG0444     1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDLLKLSEKEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LA----GFGMLFQGAalFDSL----SVWQNVA--FRLRQRMSDDRARGIALDKLARVGLGP--ETADLMPAELSGGMAKR 141
Cdd:COG0444    81 RKirgrEIQMIFQDP--MTSLnpvmTVGDQIAepLRIHGGLSKAEARERAIELLERVGLPDpeRRLDRYPHELSGGMRQR 158
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 142 AGLARAIADDPQIIFFDEPTTGLDP-IRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG0444   159 VMIARALALEPKLLIADEPTTALDVtIQAQILN-LLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVE 236
PhnC COG3638
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ...
1-224 1.76e-55

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 442855 [Multi-domain]  Cd Length: 249  Bit Score: 177.94  E-value: 1.76e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAARAR 72
Cdd:COG3638     2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTalrgralRRLRRR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FlagfGMLFQGAALFDSLSVWQNV---------AFR-LRQRMS-DDRARgiALDKLARVGLGpETADLMPAELSGGMAKR 141
Cdd:COG3638    82 I----GMIFQQFNLVPRLSVLTNVlagrlgrtsTWRsLLGLFPpEDRER--ALEALERVGLA-DKAYQRADQLSGGQQQR 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 142 AGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGM 221
Cdd:COG3638   155 VAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL 234

                  ...
gi 1608348115 222 DAA 224
Cdd:COG3638   235 TDA 237
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
1-229 2.76e-54

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 182.03  E-value: 2.76e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF--GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA---GRILWQGRPLDRAARARFLA 75
Cdd:COG1123     4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRGR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 GFGMLFQGA-ALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQ 153
Cdd:COG1123    84 RIGMVFQDPmTQLNPVTVGDQIAEALEnLGLSRAEARARVLELLEAVGL-ERRLDRYPHQLSGGQRQRVAIAMALALDPD 162
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 154 IIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP-ALAA 229
Cdd:COG1123   163 LLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPqALAA 239
EcfA2 COG1122
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ...
2-219 9.68e-54

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];


Pssm-ID: 440739 [Multi-domain]  Cd Length: 230  Bit Score: 172.90  E-value: 9.68e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:COG1122     1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQ--GAALFDSlSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:COG1122    81 FQnpDDQLFAP-TVEEDVAFGPENLgLPREEIRERVEEALELVGLE-HLADRPPHELSGGQKQRVAIAGVLAMEPEVLVL 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1122   159 DEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
ABC_MJ0796_LolCDE_FtsE cd03255
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ...
2-212 1.24e-53

ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.


Pssm-ID: 213222 [Multi-domain]  Cd Length: 218  Bit Score: 172.29  E-value: 1.24e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGA----TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFL 74
Cdd:cd03255     1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDiskLSEKELAAFR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 A-GFGMLFQGAALFDSLSVWQNVAFRLR---QRMSDDRARGIALdkLARVGLGpETADLMPAELSGGMAKRAGLARAIAD 150
Cdd:cd03255    81 RrHIGFVFQSFNLLPDLTALENVELPLLlagVPKKERRERAEEL--LERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMaSVARIGDRVALLQGGRI 212
Cdd:cd03255   158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
glnQ PRK09493
glutamine ABC transporter ATP-binding protein GlnQ;
1-231 3.07e-52

glutamine ABC transporter ATP-binding protein GlnQ;


Pssm-ID: 181906 [Multi-domain]  Cd Length: 240  Bit Score: 169.50  E-value: 3.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-RPLDRAARARFL-AGFG 78
Cdd:PRK09493    1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDERLIrQEAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:PRK09493   81 MVFQQFYLFPHLTALENVMFGPLRvrGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFL 231
Cdd:PRK09493  160 FDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPsqrLQEFL 236
CysA COG1118
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ...
2-240 3.60e-52

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440735 [Multi-domain]  Cd Length: 348  Bit Score: 172.25  E-value: 3.60e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL--DRAARARflaGFGM 79
Cdd:COG1118     3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLftNLPPRER---RVGF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:COG1118    80 VFQHYALFPHMTVAENIAFGLRVRpPSKAEIRARVEELLELVQL-EGLADRYPSQLSGGQRQRVALARALAVEPEVLLLD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFLG--- 232
Cdd:COG1118   159 EPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPAtpfVARFLGcvn 238

                  ....*...
gi 1608348115 233 RSPAQSAG 240
Cdd:COG1118   239 VLRGRVIG 246
ABC_DR_subfamily_A cd03230
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ...
2-212 6.22e-52

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213197 [Multi-domain]  Cd Length: 173  Bit Score: 166.42  E-value: 6.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRaARARFLAGFGMLF 81
Cdd:cd03230     1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVafrlrqrmsddrargialdklarvglgpetadlmpaELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:cd03230    80 EEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPT 123
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 162 TGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:cd03230   124 SGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
metN PRK11153
DL-methionine transporter ATP-binding subunit; Provisional
1-225 1.07e-51

DL-methionine transporter ATP-binding subunit; Provisional


Pssm-ID: 236863 [Multi-domain]  Cd Length: 343  Bit Score: 171.14  E-value: 1.07e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATR----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAA 69
Cdd:PRK11153    1 MIELKNISKVFPQGGrtihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalsekelRKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFlagfGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAI 148
Cdd:PRK11153   81 RRQI----GMIFQHFNLLSSRTVFDNVALPLElAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARAL 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:PRK11153  156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232
ABC_Class3 cd03229
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ...
2-211 2.19e-51

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213196 [Multi-domain]  Cd Length: 178  Bit Score: 165.05  E-value: 2.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARAR--FLAGFGM 79
Cdd:cd03229     1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELppLRRRIGM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVAFRlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03229    81 VFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGR 211
Cdd:cd03229   127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
MalK COG3839
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...
1-236 4.04e-50

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];


Pssm-ID: 443050 [Multi-domain]  Cd Length: 352  Bit Score: 167.17  E-value: 4.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflaGFGM 79
Cdd:COG3839     3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVtDLPPKDR---NIAM 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:COG3839    80 VFQSYALYPHMTVYENIAFPLKLRkVPKAEIDRRVREAAELLGLED-LLDRKPKQLSGGQRQRVALGRALVREPKVFLLD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 159 EPTTGLDP-IRARAIdALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFLGrS 234
Cdd:COG3839   159 EPLSNLDAkLRVEMR-AEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDRPAnlfVAGFIG-S 236

                  ..
gi 1608348115 235 PA 236
Cdd:COG3839   237 PP 238
FtsE COG2884
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
1-217 1.10e-49

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442130 [Multi-domain]  Cd Length: 223  Bit Score: 162.14  E-value: 1.10e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---G 76
Cdd:COG2884     1 MIRFENVSKRYPGGReALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrrR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG2884    81 IGVVFQDFRLLPDRTVYENVALPLRvTGKSRKEIRRRVREVLDLVGLS-DKAKALPHELSGGEQQRVAIARALVNRPELL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:COG2884   160 LADEPTGNLDPETSWEIMELLEEI-NRRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDEA 220
LivG COG0411
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ...
1-236 2.55e-49

ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];


Pssm-ID: 440180 [Multi-domain]  Cd Length: 257  Bit Score: 162.52  E-value: 2.55e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR-AARARFLAGFGM 79
Cdd:COG0411     4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGlPPHRIARLGIAR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVA---------------FRL-RQRMSDDRARGIALDKLARVGLGPEtADLMPAELSGGMAKRAG 143
Cdd:COG0411    84 TFQNPRLFPELTVLENVLvaaharlgrgllaalLRLpRARREEREARERAEELLERVGLADR-ADEPAGNLSYGQQRRLE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 144 LARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:COG0411   163 IARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRA 242
                         250
                  ....*....|....
gi 1608348115 224 APA-LAAFLGRSPA 236
Cdd:COG0411   243 DPRvIEAYLGEEAA 256
ABC_PstB_phosphate_transporter cd03260
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ...
2-218 3.22e-49

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).


Pssm-ID: 213227 [Multi-domain]  Cd Length: 227  Bit Score: 161.19  E-value: 3.22e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL-----EAPEAGRILWQGRPL--DRAARARFL 74
Cdd:cd03260     1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIydLDVDVLELR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 AGFGMLFQGAALFDsLSVWQNVAF--RLRQRMSDDRARGIALDKLARVGLGPETAD-LMPAELSGGMAKRAGLARAIADD 151
Cdd:cd03260    81 RRVGMVFQKPNPFP-GSIYDNVAYglRLHGIKLKEELDERVEEALRKAALWDEVKDrLHALGLSGGQQQRLCLARALANE 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:cd03260   160 PEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
NatA COG4555
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ...
1-220 5.44e-49

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 443618 [Multi-domain]  Cd Length: 243  Bit Score: 161.18  E-value: 5.44e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARaRFLAGFGML 80
Cdd:COG4555     1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPR-EARRQIGVL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLA-RVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:COG4555    80 PDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIeLLGLE-EFLDRRVGELSTGMKKKVALARALVHDPKVLLLDE 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAG 220
Cdd:COG4555   159 PTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDE 218
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
1-219 1.05e-48

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 160.59  E-value: 1.05e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARFLAgf 77
Cdd:COG1120     1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLaslSRRELARRIA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gMLFQGAALFDSLSVWQNVAF-------RLRQRMSDDRArgIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIAD 150
Cdd:COG1120    79 -YVPQEPPAPFGLTVRELVALgryphlgLFGRPSAEDRE--AVEEALERTGLE-HLADRPVDELSGGERQRVLIARALAQ 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1120   155 EPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
ABC_cobalt_CbiO_domain1 cd03225
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...
12-211 1.23e-48

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213192 [Multi-domain]  Cd Length: 211  Bit Score: 159.17  E-value: 1.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAAL-FDSL 90
Cdd:cd03225    12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDqFFGP 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 SVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRA 169
Cdd:cd03225    92 TVEEEVAFGLENLgLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1608348115 170 RAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGR 211
Cdd:cd03225   171 RELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
ThiQ COG3840
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
1-233 1.56e-48

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];


Pssm-ID: 443051 [Multi-domain]  Cd Length: 232  Bit Score: 159.54  E-value: 1.56e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVldGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflAGFGML 80
Cdd:COG3840     1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE--RPVSML 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRM---SDDRARGIALdkLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:COG3840    77 FQENNLFPHLTVAQNIGLGLRPGLkltAEQRAQVEQA--LERVGLA-GLLDRLPGQLSGGQRQRVALARCLVRKRPILLL 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGM---DAAPALAAFLGR 233
Cdd:COG3840   154 DEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALldgEPPPALAAYLGI 232
ABC_Mj1267_LivG_branched cd03219
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ...
2-219 2.60e-48

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).


Pssm-ID: 213186 [Multi-domain]  Cd Length: 236  Bit Score: 159.14  E-value: 2.60e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR-AARARFLAGFGML 80
Cdd:cd03219     1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGlPPHEIARLGIGRT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNV-----------AFRLRQRMSDDRARGIALDKLARVGLGPEtADLMPAELSGGMAKRAGLARAIA 149
Cdd:cd03219    81 FQIPRLFPELTVLENVmvaaqartgsgLLLARARREEREARERAEELLERVGLADL-ADRPAGELSYGQQRRLEIARALA 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 150 DDPQIIFFDEPTTGLDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:cd03219   160 TDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228
ABC_Pro_Gly_Betaine cd03294
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ...
9-216 6.16e-48

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213261 [Multi-domain]  Cd Length: 269  Bit Score: 159.35  E-value: 6.16e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   9 KTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----GFGMLFQGA 84
Cdd:cd03294    32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRElrrkKISMVFQSF 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 ALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGPEtADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTG 163
Cdd:cd03294   112 ALLPHRTVLENVAFGLEvQGVPRAEREERAAEALELVGLEGW-EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSA 190
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 164 LDP-IRARAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03294   191 LDPlIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
FetA COG4619
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
2-212 6.43e-48

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443661 [Multi-domain]  Cd Length: 209  Bit Score: 157.29  E-value: 6.43e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLF 81
Cdd:COG4619     1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSlSVWQNVA--FRLRQRmSDDRARGIALdkLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:COG4619    81 QEPALWGG-TVRDNLPfpFQLRER-KFDRERALEL--LERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:COG4619   157 PTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
PRK11831 PRK11831
phospholipid ABC transporter ATP-binding protein MlaF;
1-216 9.29e-47

phospholipid ABC transporter ATP-binding protein MlaF;


Pssm-ID: 236997 [Multi-domain]  Cd Length: 269  Bit Score: 156.08  E-value: 9.29e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAG---F 77
Cdd:PRK11831    7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVrkrM 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:PRK11831   87 SMLFQSGALFTDMNVFDNVAYPLREhtQLPAPLLHSTVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALEPDLI 165
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK11831  166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226
YbbA COG4181
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ...
1-219 1.77e-46

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443338 [Multi-domain]  Cd Length: 233  Bit Score: 154.13  E-value: 1.77e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATR----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR---PLDRAARARF 73
Cdd:COG4181     8 IIELRGLTKTVGTGAgeltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQdlfALDEDARARL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LAG-FGMLFQGAALFDSLSVWQNVAFRLrQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:COG4181    88 RARhVGFVFQSFQLLPTLTALENVMLPL-ELAGRRDARARARALLERVGLG-HRLDHYPAQLSGGEQQRVALARAFATEP 165
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIgDRVALLQGGRIVHDGPVA 219
Cdd:COG4181   166 AILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAARC-DRVLRLRAGRLVEDTAAT 231
PhnT2 TIGR03265
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ...
2-233 3.23e-46

putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274496 [Multi-domain]  Cd Length: 353  Bit Score: 157.12  E-value: 3.23e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflAGFGMLF 81
Cdd:TIGR03265   5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK--RDYGIVF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:TIGR03265  83 QSYALFPNLTVADNIAYGLKnRGMGRAEVAERVAELLDLVGL-PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 161 TTGLDpirARAIDAL---IRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG-PVAGMD--AAPALAAFLGR 233
Cdd:TIGR03265 162 LSALD---ARVREHLrteIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGtPQEIYRhpATPFVADFVGE 237
HisP COG4598
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
1-234 7.05e-46

ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443652 [Multi-domain]  Cd Length: 259  Bit Score: 153.42  E-value: 7.05e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-------------RPLDR 67
Cdd:COG4598     8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGeeirlkpdrdgelVPADR 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  68 AARARFLAGFGMLFQGAALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLA 145
Cdd:COG4598    88 RQLQRIRTRLGMVFQSFNLWSHMTVLENVieAPVHVLGRPKAEAIERAEALLAKVGLA-DKRDAYPAHLSGGQQQRAAIA 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 146 RAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:COG4598   167 RALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNP 245
                         250
                  ....*....|..
gi 1608348115 226 A---LAAFLGRS 234
Cdd:COG4598   246 KserLRQFLSSS 257
ABC_PhnC_transporter cd03256
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ...
2-224 7.30e-46

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213223 [Multi-domain]  Cd Length: 241  Bit Score: 153.11  E-value: 7.30e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGA-TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAARARF 73
Cdd:cd03256     1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINklkgkalRQLRRQI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 lagfGMLFQGAALFDSLSVWQNV---------AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGL 144
Cdd:cd03256    81 ----GMIFQQFNLIERLSVLENVlsgrlgrrsTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAI 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 145 ARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAA 224
Cdd:cd03256   156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
YhaQ COG4152
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-219 2.80e-44

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443322 [Multi-domain]  Cd Length: 298  Bit Score: 150.64  E-value: 2.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFlaGF--- 77
Cdd:COG4152     1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRI--GYlpe 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 --GmlfqgaaLFDSLSVWQNVAF--RLRQrMSDDRARGIALDKLARVGLGPETADLMpAELSGGMAKRAGLARAIADDPQ 153
Cdd:COG4152    79 erG-------LYPKMKVGEQLVYlaRLKG-LSKAEAKRRADEWLERLGLGDRANKKV-EELSKGNQQKVQLIAALLHDPE 149
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 154 IIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG4152   150 LLILDEPFSGLDPVNVELLKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVD 214
ABC_OpuCA_Osmoprotection cd03295
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ...
2-234 8.80e-44

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213262 [Multi-domain]  Cd Length: 242  Bit Score: 147.83  E-value: 8.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:cd03295     1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGPET-ADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:cd03295    81 IQQIGLFPHMTVEENIALVPKlLKWPKEKIRERADELLALVGLDPAEfADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFLGRS 234
Cdd:cd03295   161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAndfVAEFVGAD 239
ABC_CysA_sulfate_importer cd03296
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ...
2-232 2.29e-43

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213263 [Multi-domain]  Cd Length: 239  Bit Score: 146.72  E-value: 2.29e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflaGFGML 80
Cdd:cd03296     3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAtDVPVQER---NVGFV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-----QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:cd03296    80 FQHYALFRHMTVFDNVAFGLRvkprsERPPEAEIRAKVHELLKLVQL-DWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRI--------VHDGPvagmdAAPAL 227
Cdd:cd03296   159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIeqvgtpdeVYDHP-----ASPFV 233

                  ....*
gi 1608348115 228 AAFLG 232
Cdd:cd03296   234 YSFLG 238
ABC_PotA_N cd03300
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ...
2-216 3.79e-43

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213267 [Multi-domain]  Cd Length: 232  Bit Score: 145.84  E-value: 3.79e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflaGFGML 80
Cdd:cd03300     1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDItNLPPHKR---PVNTV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03300    78 FQNYALFPHLTVFENIAFGLRlKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03300   157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213
ZnuC COG1121
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ...
1-232 3.04e-42

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440738 [Multi-domain]  Cd Length: 245  Bit Score: 143.69  E-value: 3.04e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAA--------RAR 72
Cdd:COG1121     6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARrrigyvpqRAE 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FLAGFgmlfqgaalfdSLSVWQNVAFRLRQRMS-----DDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARA 147
Cdd:COG1121    86 VDWDF-----------PITVRDVVLMGRYGRRGlfrrpSRADREAVDEALERVGLE-DLADRPIGELSGGQQQRVLLARA 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHdGPVAGMDAAPAL 227
Cdd:COG1121   154 LAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRGLVAH-GPPEEVLTPENL 231

                  ....*
gi 1608348115 228 AAFLG 232
Cdd:COG1121   232 SRAYG 236
ABC_ModC_like cd03299
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ...
2-232 3.06e-42

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213266 [Multi-domain]  Cd Length: 235  Bit Score: 143.63  E-value: 3.06e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATrVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR------PLDRaararfla 75
Cdd:cd03299     1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKditnlpPEKR-------- 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 GFGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLARVgLG-PETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:cd03299    72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM-LGiDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFL 231
Cdd:cd03299   151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKnefVAEFL 230

                  .
gi 1608348115 232 G 232
Cdd:cd03299   231 G 231
ABC_phnC TIGR02315
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ...
1-224 6.07e-42

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]


Pssm-ID: 131368 [Multi-domain]  Cd Length: 243  Bit Score: 142.82  E-value: 6.07e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFG-ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLdRAARARFL----A 75
Cdd:TIGR02315   1 MLEVENLSKVYPnGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI-TKLRGKKLrklrR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 GFGMLFQGAALFDSLSVWQNV-----------AFRLRQRMSDDRARgiALDKLARVGLGpETADLMPAELSGGMAKRAGL 144
Cdd:TIGR02315  80 RIGMIFQHYNLIERLTVLENVlhgrlgykptwRSLLGRFSEEDKER--ALSALERVGLA-DKAYQRADQLSGGQQQRVAI 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 145 ARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAA 224
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDE 236
PRK11264 PRK11264
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
1-225 7.78e-42

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional


Pssm-ID: 183063 [Multi-domain]  Cd Length: 250  Bit Score: 142.97  E-value: 7.78e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRI------------LWQGRPLDRA 68
Cdd:PRK11264    3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgditidtarsLSQQKGLIRQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  69 ARARflagFGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDK--LARVGL-GPETAdlMPAELSGGMAKRAGLA 145
Cdd:PRK11264   83 LRQH----VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARelLAKVGLaGKETS--YPRRLSGGQQQRVAIA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 146 RAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETgATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:PRK11264  157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
ProV COG4175
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ...
7-213 8.27e-42

ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443334 [Multi-domain]  Cd Length: 389  Bit Score: 146.40  E-value: 8.27e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTfGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----GFGMLFQ 82
Cdd:COG4175    34 LEKT-GQTVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKLSKKELRElrrkKMSMVFQ 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:COG4175   113 HFALLPHRTVLENVAFGLEiQGVPKAERRERAREALELVGLA-GWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAF 191
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 162 TGLDP-IRARAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIV 213
Cdd:COG4175   192 SALDPlIRREMQDELLE-LQAKLKKTIVFITHDLDEALRLGDRIAIMKDGRIV 243
3a0106s01 TIGR00968
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
2-232 1.79e-41

sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]


Pssm-ID: 130041 [Multi-domain]  Cd Length: 237  Bit Score: 141.48  E-value: 1.79e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR-AARARflaGFGML 80
Cdd:TIGR00968   1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRvHARDR---KIGFV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:TIGR00968  78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 161 TTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFLG 232
Cdd:TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPAnpfVMSFLG 232
ABC_Iron-Siderophores_B12_Hemin cd03214
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...
3-216 6.25e-41

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.


Pssm-ID: 213181 [Multi-domain]  Cd Length: 180  Bit Score: 138.34  E-value: 6.25e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARFLAgfgm 79
Cdd:cd03214     1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLaslSPKELARKIA---- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 lfqgaalfdslSVWQNvafrlrqrmsddrargialdkLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03214    77 -----------YVPQA---------------------LELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03214   124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
ECF_ATPase_2 TIGR04521
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...
13-217 2.13e-40

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 275314 [Multi-domain]  Cd Length: 277  Bit Score: 139.89  E-value: 2.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  13 ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-------RAARARFlagfGMLFQGAA 85
Cdd:TIGR04521  17 EKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITakkkkklKDLRKKV----GLVFQFPE 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 --LFdSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:TIGR04521  93 hqLF-EETVYKDIAFGPKnLGLSEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVLAMEPEVLILDEPTA 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 163 GLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:TIGR04521 172 GLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGT 226
CcmA COG4133
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ...
1-193 3.03e-40

ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443308 [Multi-domain]  Cd Length: 206  Bit Score: 137.61  E-value: 3.03e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRaARARFLAGFGML 80
Cdd:COG4133     2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD-AREDYRRRLAYL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAF--RLRQRMSDDRArgiALDKLARVGLGPEtADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:COG4133    81 GHADGLKPELTVRENLRFwaALYGLRADREA---IDEALEAVGLAGL-ADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1608348115 159 EPTTGLDPIRARAIDALIRGiVTETGATALTITHD 193
Cdd:COG4133   157 EPFTALDAAGVALLAELIAA-HLARGGAVLLTTHQ 190
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
3-211 3.78e-40

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 135.45  E-value: 3.78e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQ 82
Cdd:cd00267     1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 gaalfdslsvwqnvafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:cd00267    81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 163 GLDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGR 211
Cdd:cd00267   110 GLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELAADRVIVLKDGK 157
ABC_MalK_N cd03301
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ...
2-216 9.36e-40

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.


Pssm-ID: 213268 [Multi-domain]  Cd Length: 213  Bit Score: 136.23  E-value: 9.36e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARFLAgfgML 80
Cdd:cd03301     1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVtDLPPKDRDIA---MV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRMS-----DDRARGIAldKLARVGlgpETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:cd03301    78 FQNYALYPHMTVYDNIAFGLKLRKVpkdeiDERVREVA--ELLQIE---HLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03301   153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
nikE PRK10419
nickel ABC transporter ATP-binding protein NikE;
6-223 1.64e-39

nickel ABC transporter ATP-binding protein NikE;


Pssm-ID: 236689 [Multi-domain]  Cd Length: 268  Bit Score: 137.51  E-value: 1.64e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   6 GLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFLAGFGMLFQ 82
Cdd:PRK10419   17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPlakLNRAQRKAFRRDIQMVFQ 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GA--ALFDSLSVWQNVAFRLRQRMSDDRARGIA--LDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK10419   97 DSisAVNPRKTVREIIREPLRHLLSLDKAERLAraSEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:PRK10419  177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241
ntrCD TIGR01184
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ...
17-218 4.97e-39

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]


Pssm-ID: 130252 [Multi-domain]  Cd Length: 230  Bit Score: 135.29  E-value: 4.97e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLagfgmLFQGAALFDSLSVWQNV 96
Cdd:TIGR01184   1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-----VFQNYSLLPWLTVRENI 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  97 AF---RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAID 173
Cdd:TIGR01184  76 ALavdRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1608348115 174 ALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199
TauB COG4525
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
1-214 8.64e-39

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443596 [Multi-domain]  Cd Length: 262  Bit Score: 135.37  E-value: 8.64e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflag 76
Cdd:COG4525     3 MLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADR---- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 fGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG4525    79 -GVVFQKDALLPWLNVLDNVAFGLRlRGVPKAERRARAEELLALVGLA-DFARRRIWQLSGGMRQRVGIARALAADPRFL 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG--GRIVH 214
Cdd:COG4525   157 LMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIVE 217
ABC_putative_ATPase cd03269
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ...
2-216 1.04e-38

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213236 [Multi-domain]  Cd Length: 210  Bit Score: 133.56  E-value: 1.04e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflagFGMLF 81
Cdd:cd03269     1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR----IGYLP 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAF--RLRQrMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03269    77 EERGLYPKMKVIDQLVYlaQLKG-LKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03269   155 PFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
AppF COG4608
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...
2-226 1.65e-38

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443658 [Multi-domain]  Cd Length: 329  Bit Score: 136.40  E-value: 1.65e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF-----------GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDR 67
Cdd:COG4608     8 LEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDitgLSG 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  68 AARARFLAGFGMLFQG--AALFDSLSVWQNVAFRLR-QRMSDDRAR-GIALDKLARVGLGPETADLMPAELSGGMAKRAG 143
Cdd:COG4608    88 RELRPLRRRMQMVFQDpyASLNPRMTVGDIIAEPLRiHGLASKAERrERVAELLELVGLRPEHADRYPHEFSGGQRQRIG 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 144 LARAIADDPQIIFFDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMD 222
Cdd:COG4608   168 IARALALNPKLIVCDEPVSALDvSIQAQVLN-LLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELY 246

                  ....
gi 1608348115 223 AAPA 226
Cdd:COG4608   247 ARPL 250
ABC_subfamily_A cd03263
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ...
2-219 2.29e-38

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.


Pssm-ID: 213230 [Multi-domain]  Cd Length: 220  Bit Score: 133.01  E-value: 2.29e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR--VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLdRAARARFLAGFGM 79
Cdd:cd03263     1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDRKAARQSLGY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVAF--RLRqRMSDDRARGIALDKLARVGLGPEtADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:cd03263    80 CPQFDALFDELTVREHLRFyaRLK-GLPKSEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVteTGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:cd03263   158 DEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
1-226 2.33e-38

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 139.82  E-value: 2.33e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGA----TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA----GRILWQGRPLDRA--AR 70
Cdd:COG4172     6 LLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAahpsGSILFDGQDLLGLseRE 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  71 ARFLAG--FGMLFQ------------GAALFDSLsvwqnvafRLRQRMSDDRARGIALDKLARVGLgPETADLM---PAE 133
Cdd:COG4172    86 LRRIRGnrIAMIFQepmtslnplhtiGKQIAEVL--------RLHRGLSGAAARARALELLERVGI-PDPERRLdayPHQ 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP-IRARaIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:COG4172   157 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVtVQAQ-ILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEI 235
                         250
                  ....*....|....
gi 1608348115 213 VHDGPVAGMDAAPA 226
Cdd:COG4172   236 VEQGPTAELFAAPQ 249
ABC_BcrA_bacitracin_resist cd03268
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ...
2-216 2.53e-38

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.


Pssm-ID: 213235 [Multi-domain]  Cd Length: 208  Bit Score: 132.73  E-value: 2.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARArfLAGFGMLF 81
Cdd:cd03268     1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA--LRRIGALI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDklaRVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:cd03268    79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD---VVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 162 TGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03268   155 NGLDPDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
1-234 7.79e-38

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 137.84  E-value: 7.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD----RAARArflAG 76
Cdd:COG1129     4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfrspRDAQA---AG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAF----RLRQRMSDDRARGIALDKLARVGLgpetaDLMPAELSG--GMAKRAGL--ARAI 148
Cdd:COG1129    81 IAIIHQELNLVPNLSVAENIFLgrepRRGGLIDWRAMRRRARELLARLGL-----DIDPDTPVGdlSVAQQQLVeiARAL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 149 ADDPQIIFFDEPTTGLDPiraRAIDAL---IRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:COG1129   156 SRDARVLILDEPTASLTE---REVERLfriIRRL-KAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDE 231

                  ....*....
gi 1608348115 226 ALAAFLGRS 234
Cdd:COG1129   232 LVRLMVGRE 240
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
17-162 1.13e-37

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 128.92  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSLSVWQNV 96
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  97 AFRLR----QRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:pfam00005  81 RLGLLlkglSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
ABC_TM1139_LivF_branched cd03224
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...
2-223 2.93e-37

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.


Pssm-ID: 213191 [Multi-domain]  Cd Length: 222  Bit Score: 130.25  E-value: 2.93e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAA-RARFLAGFGML 80
Cdd:cd03224     1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPpHERARAGIGYV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQN--VAFRLRQRMSDDRARGIALDKLARVGlgpETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:cd03224    81 PEGRRIFPELTVEENllLGAYARRRAKRKARLERVYELFPRLK---ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:cd03224   158 EPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
potA PRK09452
spermidine/putrescine ABC transporter ATP-binding protein PotA;
2-217 3.66e-37

spermidine/putrescine ABC transporter ATP-binding protein PotA;


Pssm-ID: 236523 [Multi-domain]  Cd Length: 375  Bit Score: 133.92  E-value: 3.66e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRA-ARARFLagfGML 80
Cdd:PRK09452   15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVpAENRHV---NTV 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK09452   92 FQSYALFPHMTVFENVAFGLRmQKTPAAEITPRVMEALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK09452  171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
ABC_FtsE cd03292
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...
2-212 6.67e-37

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages


Pssm-ID: 213259 [Multi-domain]  Cd Length: 214  Bit Score: 129.06  E-value: 6.67e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGA-TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFLAGF 77
Cdd:cd03292     1 IEFINVTKTYPNgTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDvsdLRGRAIPYLRRKI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLRqrMSDDRARGIA---LDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:cd03292    81 GVVFQDFRLLPDRNVYENVAFALE--VTGVPPREIRkrvPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:cd03292   158 LIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
LolD_lipo_ex TIGR02211
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ...
1-213 8.92e-37

lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 131266 [Multi-domain]  Cd Length: 221  Bit Score: 129.01  E-value: 8.92e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL------DRAA- 69
Cdd:TIGR02211   1 LLKCENLGKRYQegklDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLsklssnERAKl 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFLagfGMLFQGAALFDSLSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAI 148
Cdd:TIGR02211  81 RNKKL---GFIYQFHHLLPDFTALENVAMpLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARAL 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIgDRVALLQGGRIV 213
Cdd:TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
ABC_Metallic_Cations cd03235
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ...
3-215 1.59e-36

ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.


Pssm-ID: 213202 [Multi-domain]  Cd Length: 213  Bit Score: 128.03  E-value: 1.59e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAaRARFlagfGMLFQ 82
Cdd:cd03235     1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-RKRI----GYVPQ 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 gAALFDS---LSVWQNVAFRLRQRMS-------DDRARgiALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:cd03235    76 -RRSIDRdfpISVRDVVLMGLYGHKGlfrrlskADKAK--VDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDP 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGiVTETGATALTITHDMASVARIGDRVALLQGGRIVHD 215
Cdd:cd03235   152 DLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
COG4559 COG4559
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
1-219 3.31e-36

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443620 [Multi-domain]  Cd Length: 258  Bit Score: 128.69  E-value: 3.31e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARARFLAgf 77
Cdd:COG4559     1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwspWELARRRA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gMLFQGAAL-FDsLSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIA------ 149
Cdd:COG4559    79 -VLPQHSSLaFP-FTVEEVVALgRAPHGSSAAQDRQIVREALALVGLAH-LAGRSYQTLSGGEQQRVQLARVLAqlwepv 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 150 -DDPQIIFFDEPTTGLDPIRARAIDALIRGiVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG4559   156 dGGPRWLFLDEPTSALDLAHQHAVLRLARQ-LARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPE 225
ModC COG4148
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ...
1-238 5.04e-36

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443319 [Multi-domain]  Cd Length: 358  Bit Score: 130.61  E-value: 5.04e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRgLQKTFGATRvLDgVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----G 76
Cdd:COG4148     2 MLEVD-FRLRRGGFT-LD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLPphrrR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLRQrmSDDRARGIALDKLARV-GLGPeTADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:COG4148    79 IGYVFQEARLFPHLSVRGNLLYGRKR--APRAERRISFDEVVELlGIGH-LLDRRPATLSGGERQRVAIGRALLSSPRLL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLGRSP 235
Cdd:COG4148   156 LMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGEE 235

                  ...
gi 1608348115 236 AQS 238
Cdd:COG4148   236 AGS 238
PRK10851 PRK10851
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
2-212 5.87e-36

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;


Pssm-ID: 182778 [Multi-domain]  Cd Length: 353  Bit Score: 130.20  E-value: 5.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRA-ARARFLagfGML 80
Cdd:PRK10851    3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLhARDRKV---GFV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDK-----LARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:PRK10851   80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAkvtqlLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQIL 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:PRK10851  159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
LivF COG0410
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ...
1-232 7.95e-36

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];


Pssm-ID: 440179 [Multi-domain]  Cd Length: 236  Bit Score: 127.02  E-value: 7.95e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAA---RARflAGF 77
Cdd:COG0410     3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPphrIAR--LGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQN--VAFRLRQRMSDDRARgialdkLARV-GLGPETADLM--PA-ELSGG---M-AkragLARA 147
Cdd:COG0410    81 GYVPEGRRIFPSLTVEENllLGAYARRDRAEVRAD------LERVyELFPRLKERRrqRAgTLSGGeqqMlA----IGRA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPAL 227
Cdd:COG0410   151 LMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLN-REGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEV 229

                  ....*.
gi 1608348115 228 -AAFLG 232
Cdd:COG0410   230 rEAYLG 235
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
1-224 8.97e-36

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 132.46  E-value: 8.97e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD----RAARArflAG 76
Cdd:COG3845     5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRirspRDAIA---LG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVA------FRLRQRMSDDRAR--------GIALDKLARVGlgpetadlmpaELSGGMAKRA 142
Cdd:COG3845    82 IGMVHQHFMLVPNLTVAENIVlgleptKGGRLDRKAARARirelseryGLDVDPDAKVE-----------DLSVGEQQRV 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 143 GLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMD 222
Cdd:COG3845   151 EILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETS 229

                  ..
gi 1608348115 223 AA 224
Cdd:COG3845   230 EE 231
ABC_drug_resistance_like cd03264
ABC-type multidrug transport system, ATPase component; The biological function of this family ...
2-216 1.78e-35

ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213231 [Multi-domain]  Cd Length: 211  Bit Score: 125.38  E-value: 1.78e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGeSLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPlDRAARARFLAGFGMLF 81
Cdd:cd03264     1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD-VLKQPQKLRRRIGYLP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:cd03264    79 QEFGVYPNFTVREFLDYIAWlKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 161 TTGLDP---IRaraidalIRGIVTETGATALTI--THDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03264   158 TAGLDPeerIR-------FRNLLSELGEDRIVIlsTHIVEDVESLCNQVAVLNKGKLVFEG 211
phnK PRK11701
phosphonate C-P lyase system protein PhnK; Provisional
1-216 2.92e-35

phosphonate C-P lyase system protein PhnK; Provisional


Pssm-ID: 183280 [Multi-domain]  Cd Length: 258  Bit Score: 126.19  E-value: 2.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR---PLDRA----ARARF 73
Cdd:PRK11701    6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqLRDLYalseAERRR 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LA----GFgmlfqgaalfdslsVWQNVAFRLRQRMSD----------------DRARGIALDKLARVGLGPETADLMPAE 133
Cdd:PRK11701   86 LLrtewGF--------------VHQHPRDGLRMQVSAggnigerlmavgarhyGDIRATAGDWLERVEIDAARIDDLPTT 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMAsVARI-GDRVALLQGGR 211
Cdd:PRK11701  152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDvSVQARLLD-LLRGLVRELGLAVVIVTHDLA-VARLlAHRLLVMKQGR 229

                  ....*
gi 1608348115 212 IVHDG 216
Cdd:PRK11701  230 VVESG 234
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
7-225 9.67e-35

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 129.80  E-value: 9.67e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEaGRILWQGRPLDRAARARFLA---GFGMLFQG 83
Cdd:COG4172   292 FRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPSE-GEIRFDGQDLDGLSRRALRPlrrRMQVVFQD 370
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  84 AalFDSLS----VWQNVA--FRLRQRMSDDRAR-GIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:COG4172   371 P--FGSLSprmtVGQIIAegLRVHGPGLSAAERrARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLV 448
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 157 FDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:COG4172   449 LDEPTSALDvSVQAQILD-LLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAP 517
potG PRK11607
putrescine ABC transporter ATP-binding subunit PotG;
1-216 1.09e-34

putrescine ABC transporter ATP-binding subunit PotG;


Pssm-ID: 183226 [Multi-domain]  Cd Length: 377  Bit Score: 127.64  E-value: 1.09e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGrpLDRAARARFLAGFGML 80
Cdd:PRK11607   19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG--VDLSHVPPYQRPINMM 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK11607   97 FQSYALFPHMTVEQNIAFGLKQdKLPKAEIASRVNEMLGLVHM-QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 160 PTTGLD-PIRARaIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK11607  176 PMGALDkKLRDR-MQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
ABC_DrrA cd03265
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ...
2-216 1.30e-34

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213232 [Multi-domain]  Cd Length: 220  Bit Score: 123.25  E-value: 1.30e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARaRFLAGFGMLF 81
Cdd:cd03265     1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR-EVRRRIGIVF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:cd03265    80 QDLSVDDELTGWENLYIHARlYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 161 TTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03265   159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
heterocyst_DevA TIGR02982
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ...
2-213 3.86e-34

ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.


Pssm-ID: 274374 [Multi-domain]  Cd Length: 220  Bit Score: 122.05  E-value: 3.86e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGA----TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA-- 75
Cdd:TIGR02982   2 ISIRNLNHYYGHgslrKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELHGASKKQLVQlr 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 -GFGMLFQGAALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:TIGR02982  82 rRIGYIFQAHNLLGFLTARQNVqmALELQPNLSYQEARERARAMLEAVGLG-DHLNYYPHNLSGGQKQRVAIARALVHHP 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDmASVARIGDRVALLQGGRIV 213
Cdd:TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHD-NRILDVADRILQMEDGKLL 220
ABC_NatA_sodium_exporter cd03266
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ...
1-216 4.36e-34

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.


Pssm-ID: 213233 [Multi-domain]  Cd Length: 218  Bit Score: 122.09  E-value: 4.36e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATR----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARArFLAG 76
Cdd:cd03266     1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE-ARRR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:cd03266    80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03266   160 LDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
ABC_ThiQ_thiamine_transporter cd03298
ATP-binding cassette domain of the thiamine transport system; Part of the ...
21-216 5.39e-34

ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213265 [Multi-domain]  Cd Length: 211  Bit Score: 121.45  E-value: 5.39e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  21 DLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflAGFGMLFQGAALFDSLSVWQNVAF-- 98
Cdd:cd03298    18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVGLgl 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  99 --RLRQRMSDDRARGIALdklARVGLGPETADLmPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALI 176
Cdd:cd03298    96 spGLKLTAEDRQAIEVAL---ARVGLAGLEKRL-PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1608348115 177 RGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03298   172 LDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
SunT COG2274
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ...
2-217 1.39e-33

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];


Pssm-ID: 441875 [Multi-domain]  Cd Length: 711  Bit Score: 127.64  E-value: 1.39e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLqkTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGF 77
Cdd:COG2274   474 IELENV--SFRypgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQI 551
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFdSLSVWQNVAFRlRQRMSDDRARGIAldKLArvGLGPETADlMP-----------AELSGGMAKRAGLAR 146
Cdd:COG2274   552 GVVLQDVFLF-SGTIRENITLG-DPDATDEEIIEAA--RLA--GLHDFIEA-LPmgydtvvgeggSNLSGGQRQRLAIAR 624
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 147 AIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVteTGATALTITHDMaSVARIGDRVALLQGGRIVHDGP 217
Cdd:COG2274   625 ALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGT 692
ABC_ModC_molybdenum_transporter cd03297
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ...
20-216 1.67e-33

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213264 [Multi-domain]  Cd Length: 214  Bit Score: 120.48  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  20 VDLTVgQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----GFGMLFQGAALFDSLSVWQN 95
Cdd:cd03297    17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPpqqrKIGLVFQQYALFPHLNVREN 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLR-QRMSDDRARGIALdkLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDA 174
Cdd:cd03297    96 LAFGLKrKRNREDRISVDEL--LDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1608348115 175 LIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03297   173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
ABC_cobalt_CbiO_domain2 cd03226
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...
12-213 1.76e-33

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213193 [Multi-domain]  Cd Length: 205  Bit Score: 120.05  E-value: 1.76e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARfLAGFGMLFQGAALFDSlS 91
Cdd:cd03226    11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRK-SIGYVMQDVDYQLFTD-S 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAFRLRQrMSDD--RARGIaLDKLARVGLgpetADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRA 169
Cdd:cd03226    89 VREELLLGLKE-LDAGneQAETV-LKDLDLYAL----KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348115 170 RAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIV 213
Cdd:cd03226   163 ERVGELIR-ELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
ABC_Carb_Monos_I cd03216
First domain of the ATP-binding cassette component of monosaccharide transport system; This ...
2-215 2.49e-33

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213183 [Multi-domain]  Cd Length: 163  Bit Score: 118.30  E-value: 2.49e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD----RAARArflAGF 77
Cdd:cd03216     1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSfaspRDARR---AGI 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQgaalfdslsvwqnvafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFF 157
Cdd:cd03216    78 AMVYQ---------------------------------------------------LSVGERQMVEIARALARNARLLIL 106
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHD 215
Cdd:cd03216   107 DEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
fbpC PRK11432
ferric ABC transporter ATP-binding protein;
2-234 3.36e-33

ferric ABC transporter ATP-binding protein;


Pssm-ID: 183133 [Multi-domain]  Cd Length: 351  Bit Score: 122.91  E-value: 3.36e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARFLAgfgML 80
Cdd:PRK11432    7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVtHRSIQQRDIC---MV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGL-GPEtaDLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK11432   84 FQSYALFPHMSLGENVGYGLKmLGVPKEERKQRVKEALELVDLaGFE--DRYVDQISGGQQQRVALARALILKPKVLLFD 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA---LAAFLGRS 234
Cdd:PRK11432  162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAsrfMASFMGDA 240
ArtP COG4161
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
2-216 3.44e-33

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443326 [Multi-domain]  Cd Length: 242  Bit Score: 120.12  E-value: 3.44e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-----RAARARFLAG 76
Cdd:COG4161     3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqkpSEKAIRLLRQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 -FGMLFQGAALFDSLSVWQN-VAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQ 153
Cdd:COG4161    83 kVGMVFQQYNLWPHLTVMENlIEAPCKvLGLSKEQAREKAMKLLARLRLT-DKADRFPLHLSGGQQQRVAIARALMMEPQ 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 154 IIFFDEPTTGLDPirarAIDALIRGIVTE---TGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:COG4161   162 VLLFDEPTAALDP----EITAQVVEIIRElsqTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQG 223
PRK14247 PRK14247
phosphate ABC transporter ATP-binding protein; Provisional
2-218 3.80e-33

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172735 [Multi-domain]  Cd Length: 250  Bit Score: 120.40  E-value: 3.80e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCI-----LGLEAPEAGRILWQGRPLDRAARARFLAG 76
Cdd:PRK14247    4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFnrlieLYPEARVSGEVYLDGQDIFKMDVIELRRR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLR-QRMSDDRArgialDKLARVGLGPETADL---------MPA-ELSGGMAKRAGLA 145
Cdd:PRK14247   84 VQMVFQIPNPIPNLSIFENVALGLKlNRLVKSKK-----ELQERVRWALEKAQLwdevkdrldAPAgKLSGGQQQRLCIA 158
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 146 RAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:PRK14247  159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
drrA TIGR01188
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ...
9-221 4.79e-33

daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]


Pssm-ID: 130256 [Multi-domain]  Cd Length: 302  Bit Score: 121.34  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   9 KTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARaRFLAGFGMLFQGAALFD 88
Cdd:TIGR01188   1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR-KVRRSIGIVPQYASVDE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  89 SLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPI 167
Cdd:TIGR01188  80 DLTGRENLEMMGRlYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 168 RARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGM 221
Cdd:TIGR01188 159 TRRAIWDYIRALK-EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
artP PRK11124
arginine transporter ATP-binding subunit; Provisional
2-216 6.29e-33

arginine transporter ATP-binding subunit; Provisional


Pssm-ID: 182980 [Multi-domain]  Cd Length: 242  Bit Score: 119.73  E-value: 6.29e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAG----- 76
Cdd:PRK11124    3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIrelrr 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 -FGMLFQGAALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQ 153
Cdd:PRK11124   83 nVGMVFQQYNLWPHLTVQQNLieAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQ 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 154 IIFFDEPTTGLDP-IRARAIDaLIRGIvTETGATALTITHDMaSVAR-IGDRVALLQGGRIVHDG 216
Cdd:PRK11124  162 VLLFDEPTAALDPeITAQIVS-IIREL-AETGITQVIVTHEV-EVARkTASRVVYMENGHIVEQG 223
PRK10619 PRK10619
histidine ABC transporter ATP-binding protein HisP;
7-231 6.60e-33

histidine ABC transporter ATP-binding protein HisP;


Pssm-ID: 182592 [Multi-domain]  Cd Length: 257  Bit Score: 120.07  E-value: 6.60e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-----------------RAA 69
Cdd:PRK10619   11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadknqlRLL 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFLagfgMLFQGAALFDSLSVWQNVAFRLRQ--RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARA 147
Cdd:PRK10619   91 RTRLT----MVFQHFNLWSHMTVLENVMEAPIQvlGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDPiraRAIDALIRGI--VTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP---VAGMD 222
Cdd:PRK10619  167 LAMEPEVLLFDEPTSALDP---ELVGEVLRIMqqLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGApeqLFGNP 243

                  ....*....
gi 1608348115 223 AAPALAAFL 231
Cdd:PRK10619  244 QSPRLQQFL 252
PRK13536 PRK13536
nodulation factor ABC transporter ATP-binding protein NodI;
2-216 7.09e-33

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237419 [Multi-domain]  Cd Length: 340  Bit Score: 121.86  E-value: 7.09e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAAR-ARflAGFGML 80
Cdd:PRK13536   42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARlAR--ARIGVV 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVA-----FRLRQRMSDdrARGIALDKLARVglgPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:PRK13536  120 PQFDNLDLEFTVRENLLvfgryFGMSTREIE--AVIPSLLEFARL---ESKADARVSDLSGGMKRRLTLARALINDPQLL 194
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13536  195 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
PstB COG1117
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ...
2-217 1.39e-32

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440734 [Multi-domain]  Cd Length: 258  Bit Score: 118.99  E-value: 1.39e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL--EAPEA---GRILWQGRP-LDR-----AAR 70
Cdd:COG1117    12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPGArveGEILLDGEDiYDPdvdvvELR 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  71 ARFlagfGMLFQGAALFdSLSVWQNVAF--RLRQRMSDDRARGIALDKLARVGLGPETAD-L-MPA-ELSGGMAKRAGLA 145
Cdd:COG1117    92 RRV----GMVFQKPNPF-PKSIYDNVAYglRLHGIKSKSELDEIVEESLRKAALWDEVKDrLkKSAlGLSGGQQQRLCIA 166
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 146 RAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtgataLTI---THDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:COG1117   167 RALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-----YTIvivTHNMQQAARVSDYTAFFYLGELVEFGP 236
ssuB PRK11247
aliphatic sulfonates transport ATP-binding subunit; Provisional
4-218 1.51e-32

aliphatic sulfonates transport ATP-binding subunit; Provisional


Pssm-ID: 183055 [Multi-domain]  Cd Length: 257  Bit Score: 119.01  E-value: 1.51e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAAR-ARflagfgMLFQ 82
Cdd:PRK11247   15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREdTR------LMFQ 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSLSVWQNVAFRLRQRMSDDrargiALDKLARVGLGPETADlMPAELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:PRK11247   89 DARLLPWKKVIDNVGLGLKGQWRDA-----ALQALAAVGLADRANE-WPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 163 GLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:PRK11247  163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218
thiQ PRK10771
thiamine ABC transporter ATP-binding protein ThiQ;
21-235 2.43e-32

thiamine ABC transporter ATP-binding protein ThiQ;


Pssm-ID: 182716 [Multi-domain]  Cd Length: 232  Bit Score: 117.76  E-value: 2.43e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  21 DLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflAGFGMLFQGAALFDSLSVWQNVAFRL 100
Cdd:PRK10771   19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR--RPVSMLFQENNLFSHLTVAQNIGLGL 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 101 RQRMSDDRARGIALDKLA-RVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGI 179
Cdd:PRK10771   97 NPGLKLNAAQREKLHAIArQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV 175
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 180 VTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAG-MDAAPALAAFLGRSP 235
Cdd:PRK10771  176 CQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDElLSGKASASALLGIKS 232
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
1-217 5.86e-32

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 122.22  E-value: 5.86e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIL------W----QGRPL 65
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvrvgdeWvdmtKPGPD 358
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  66 DRAARARFLagfGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLARVGLGPETA----DLMPAELSGGMAKR 141
Cdd:TIGR03269 359 GRGRAKRYI---GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAeeilDKYPDELSEGERHR 435
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 142 AGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
PhnK COG1101
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-215 6.17e-32

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 440718 [Multi-domain]  Cd Length: 264  Bit Score: 117.49  E-value: 6.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGA-----TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARAR 72
Cdd:COG1101     1 MLELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKlpeYKRAK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FLagfGMLFQ----GAAlfDSLSVWQNVA--------FRLRQRMSDDRaRGIALDKLARVGLGPEtaDLMPAE---LSGG 137
Cdd:COG1101    81 YI---GRVFQdpmmGTA--PSMTIEENLAlayrrgkrRGLRRGLTKKR-RELFRELLATLGLGLE--NRLDTKvglLSGG 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 138 maKRAGLARAIA--DDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHD 215
Cdd:COG1101   153 --QRQALSLLMAtlTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILD 230
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
1-219 8.08e-32

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 117.18  E-value: 8.08e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD---RAARARFLAgf 77
Cdd:PRK13548    2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwsPAELARRRA-- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gMLFQGAALFDSLSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIA------D 150
Cdd:PRK13548   80 -VLPQHSSLSFPFTVEEVVAMgRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAqlwepdG 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:PRK13548  158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
nickel_nikD TIGR02770
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ...
18-218 1.57e-31

nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131817 [Multi-domain]  Cd Length: 230  Bit Score: 115.54  E-value: 1.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  18 DGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA----GRILWQGRPLDrAARARFLAgFGMLFQG--AALFDSLS 91
Cdd:TIGR02770   3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLtqtsGEILLDGRPLL-PLSIRGRH-IATIMQNprTAFNPLFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAFRLRQRMS-DDRARGIALDKLARVGLgPETADLM---PAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPI 167
Cdd:TIGR02770  81 MGNHAIETLRSLGKlSKQARALILEALEAVGL-PDPEEVLkkyPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 168 RARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTV 210
ABC_YhbG cd03218
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ...
2-216 3.50e-31

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.


Pssm-ID: 213185 [Multi-domain]  Cd Length: 232  Bit Score: 114.56  E-value: 3.50e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR-----PLDRaaRARflAG 76
Cdd:cd03218     1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQditklPMHK--RAR--LG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDK-LARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:cd03218    77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEElLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFL 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03218   156 LLDEPFAGVDPIAVQDIQKIIK-ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEG 215
cbiO PRK13635
energy-coupling factor ABC transporter ATP-binding protein;
17-217 4.57e-31

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184195 [Multi-domain]  Cd Length: 279  Bit Score: 115.50  E-value: 4.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGA-ALFDSLSVWQN 95
Cdd:PRK13635   23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPdNQFVGATVQDD 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRL------RQRMSDdRARgialDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRA 169
Cdd:PRK13635  103 VAFGLenigvpREEMVE-RVD----QALRQVGM-EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 170 RAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQGGRIVHDGP 217
Cdd:PRK13635  177 REVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGT 223
CydC COG4987
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...
16-217 5.06e-31

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444011 [Multi-domain]  Cd Length: 569  Bit Score: 119.87  E-value: 5.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:COG4987   350 VLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAVVPQRPHLFDT-TLREN 428
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VafRL-RQRMSDDRARgialDKLARVGLG------PETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGL 164
Cdd:COG4987   429 L--RLaRPDATDEELW----AALERVGLGdwlaalPDGLDTWLGEggrrLSGGERRRLALARALLRDAPILLLDEPTEGL 502
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 165 DPIRARAIDALIRGIVteTGATALTITHDMASVARIgDRVALLQGGRIVHDGP 217
Cdd:COG4987   503 DAATEQALLADLLEAL--AGRTVLLITHRLAGLERM-DRILVLEDGRIVEQGT 552
ABCC_MRP_Like cd03228
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...
2-211 6.34e-31

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213195 [Multi-domain]  Cd Length: 171  Bit Score: 112.09  E-value: 6.34e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLqkTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGF 77
Cdd:cd03228     1 IEFKNV--SFsypgRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSlSVWQNVafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFF 157
Cdd:cd03228    79 AYVPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILIL 120
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIvtETGATALTITHDMASVaRIGDRVALLQGGR 211
Cdd:cd03228   121 DEATSALDPETEALILEALRAL--AKGKTVIVIAHRLSTI-RDADRIIVLDDGR 171
cbiO TIGR01166
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ...
12-195 7.45e-31

cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 130234 [Multi-domain]  Cd Length: 190  Bit Score: 112.90  E-value: 7.45e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD------RAARARFlagfGMLFQGA- 84
Cdd:TIGR01166   3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDysrkglLERRQRV----GLVFQDPd 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 -ALFdSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:TIGR01166  79 dQLF-AADVDQDVAFGPLNLgLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1608348115 163 GLDPIRARAIDALIRGIvTETGATALTITHDMA 195
Cdd:TIGR01166 157 GLDPAGREQMLAILRRL-RAEGMTVVISTHDVD 188
tauB PRK11248
taurine ABC transporter ATP-binding subunit;
1-194 1.05e-30

taurine ABC transporter ATP-binding subunit;


Pssm-ID: 183056 [Multi-domain]  Cd Length: 255  Bit Score: 114.03  E-value: 1.05e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARflagfGML 80
Cdd:PRK11248    1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-----GVV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK11248   76 FQNEGLLPWRNVQDNVAFGLQLAgVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDM 194
Cdd:PRK11248  155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
ECF_ATPase_1 TIGR04520
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...
2-217 1.24e-30

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 275313 [Multi-domain]  Cd Length: 268  Bit Score: 114.06  E-value: 1.24e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF--GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-RPLDRAA----RARFl 74
Cdd:TIGR04520   1 IEVENVSFSYpeSEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGlDTLDEENlweiRKKV- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 agfGMLFQ-------GAalfdslSVWQNVAFRL----------RQRMsdDRArgialdkLARVGLGpETADLMPAELSGG 137
Cdd:TIGR04520  80 ---GMVFQnpdnqfvGA------TVEDDVAFGLenlgvpreemRKRV--DEA-------LKLVGME-DFRDREPHLLSGG 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 138 MAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQGGRIVHDGP 217
Cdd:TIGR04520 141 QKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGT 219
CP_lyasePhnK TIGR02323
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ...
1-216 2.44e-30

phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]


Pssm-ID: 188208 [Multi-domain]  Cd Length: 253  Bit Score: 113.00  E-value: 2.44e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP--------LDRAARAR 72
Cdd:TIGR02323   3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSgaelelyqLSEAERRR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FL-AGFGMLFQGAA--LFDSLSVWQNVAFRLR---QRMSDDrARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLAR 146
Cdd:TIGR02323  83 LMrTEWGFVHQNPRdgLRMRVSAGANIGERLMaigARHYGN-IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 147 AIADDPQIIFFDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:TIGR02323 162 NLVTRPRLVFMDEPTGGLDvSVQARLLD-LLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
PRK10584 PRK10584
putative ABC transporter ATP-binding protein YbbA; Provisional
1-209 3.23e-30

putative ABC transporter ATP-binding protein YbbA; Provisional


Pssm-ID: 182569 [Multi-domain]  Cd Length: 228  Bit Score: 112.18  E-value: 3.23e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFG----ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARF 73
Cdd:PRK10584    6 IVEVHHLKKSVGqgehELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqmDEEARAKL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LA-GFGMLFQGAALFDSLSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADD 151
Cdd:PRK10584   86 RAkHVGFVFQSFMLIPTLNALENVELpALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGR 164
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG 209
Cdd:PRK10584  165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222
ABCC_Protease_Secretion cd03246
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ...
2-212 4.43e-30

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.


Pssm-ID: 213213 [Multi-domain]  Cd Length: 173  Bit Score: 110.00  E-value: 4.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR--VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGM 79
Cdd:cd03246     1 LEVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSlSVWQNVafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03246    81 LPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDE 122
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 160 PTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIgDRVALLQGGRI 212
Cdd:cd03246   123 PNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLASA-DRILVLEDGRV 173
YnjD COG4136
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ...
1-214 6.54e-30

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];


Pssm-ID: 443311 [Multi-domain]  Cd Length: 211  Bit Score: 110.65  E-value: 6.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA---GRILWQGRPLDR-AARARflaG 76
Cdd:COG4136     1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTAlPAEQR---R 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:COG4136    78 IGILFQDDLLFPHLSVGENLAFALPPTIGRAQRRARVEQALEEAGLA-GFADRDPATLSGGQRARVALLRALLAEPRALL 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVarigdrvalLQGGRIVH 214
Cdd:COG4136   157 LDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDA---------PAAGRVLD 205
LptB COG1137
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ...
1-212 6.77e-30

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440752 [Multi-domain]  Cd Length: 240  Bit Score: 111.66  E-value: 6.77e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR-----PLDRaaRARflA 75
Cdd:COG1137     3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEdithlPMHK--RAR--L 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 GFGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALDKL-ARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:COG1137    79 GIGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELlEEFGIT-HLRKSKAYSLSGGERRRVEIARALATNPKF 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALI-----RGI--------VTETgataLTIThdmasvarigDRVALLQGGRI 212
Cdd:COG1137   158 ILLDEPFAGVDPIAVADIQKIIrhlkeRGIgvlitdhnVRET----LGIC----------DRAYIISEGKV 214
modC_ABC TIGR02142
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ...
7-227 6.92e-30

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]


Pssm-ID: 131197 [Multi-domain]  Cd Length: 354  Bit Score: 114.05  E-value: 6.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRvLDgVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----GFGMLFQ 82
Cdd:TIGR02142   5 FSKRLGDFS-LD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPpekrRIGYVFQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSLSVWQNVAFRLRQRMSDDRArgIALDKLARV-GLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:TIGR02142  83 EARLFPHLSVRGNLRYGMKRARPSERR--ISFERVIELlGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 162 TGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPAL 227
Cdd:TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
CeuD COG4604
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ...
1-219 1.96e-29

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443654 [Multi-domain]  Cd Length: 252  Bit Score: 110.56  E-value: 1.96e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARARFLAgf 77
Cdd:COG4604     1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATtpsRELAKRLA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gMLFQGAALFDSLSVWQNVAF--------RLRQrmsDDRArgiALDK-LARVGLGPeTADLMPAELSGGMAKRAGLARAI 148
Cdd:COG4604    79 -ILRQENHINSRLTVRELVAFgrfpyskgRLTA---EDRE---IIDEaIAYLDLED-LADRYLDELSGGQRQRAFIAMVL 150
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG4604   151 AQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPE 221
ABC_NatA_like cd03267
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ...
2-216 2.52e-29

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.


Pssm-ID: 213234 [Multi-domain]  Cd Length: 236  Bit Score: 110.11  E-value: 2.52e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF----------GATR-----------VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILW 60
Cdd:cd03267     1 IEVSNLSKSYrvyskepgliGSLKslfkrkyreveALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  61 QG-RPLDRaaRARFLAGFGMLF-QGAALFDSLSVWQnvAFRLRQRM---SDDRARGiALDKLAR-VGLGPETaDLMPAEL 134
Cdd:cd03267    81 AGlVPWKR--RKKFLRRIGVVFgQKTQLWWDLPVID--SFYLLAAIydlPPARFKK-RLDELSElLDLEELL-DTPVRQL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 135 SGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVH 214
Cdd:cd03267   155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234

                  ..
gi 1608348115 215 DG 216
Cdd:cd03267   235 DG 236
PhnL COG4778
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...
1-211 4.92e-29

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];


Pssm-ID: 443809 [Multi-domain]  Cd Length: 229  Bit Score: 109.06  E-value: 4.92e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-----GATR--VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIL--WQGRPLD--RAA 69
Cdd:COG4778     4 LLEVENLSKTFtlhlqGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILvrHDGGWVDlaQAS 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFLA------GFGMLF------QGAalfdsLSVwqnVAFRLRQR-MSDDRARGIALDKLARVGLGPETADLMPAELSG 136
Cdd:COG4778    84 PREILAlrrrtiGYVSQFlrviprVSA-----LDV---VAEPLLERgVDREEARARARELLARLNLPERLWDLPPATFSG 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 137 GMAKRAGLARAIADDPQIIFFDEPTTGLDPI-RARAIDaLIRGIvTETGATALTITHDMASVARIGDRVALLQGGR 211
Cdd:COG4778   156 GEQQRVNIARGFIADPPLLLLDEPTASLDAAnRAVVVE-LIEEA-KARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
galliderm_ABC TIGR03740
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ...
2-222 6.81e-29

gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.


Pssm-ID: 163452 [Multi-domain]  Cd Length: 223  Bit Score: 108.64  E-value: 6.81e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRaaraRFLAGFGMLF 81
Cdd:TIGR03740   1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR----KDLHKIGSLI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFR-LRQRMSDDRARGIaldkLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:TIGR03740  77 ESPPLYENLTARENLKVHtTLLGLPDSRIDEV----LNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 161 TTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMD 222
Cdd:TIGR03740 152 TNGLDPIGIQELRELIRSF-PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSE 212
PRK15079 PRK15079
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
18-216 7.49e-29

oligopeptide ABC transporter ATP-binding protein OppF; Provisional


Pssm-ID: 185037 [Multi-domain]  Cd Length: 331  Bit Score: 110.95  E-value: 7.49e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  18 DGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---GFGMLFQG--AALFDSLSV 92
Cdd:PRK15079   38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAvrsDIQMIFQDplASLNPRMTI 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  93 WQNVAFRLRQ---RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLD-PIR 168
Cdd:PRK15079  118 GEIIAEPLRTyhpKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDvSIQ 197
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 169 ARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK15079  198 AQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244
nikD PRK10418
nickel transporter ATP-binding protein NikD; Provisional
2-229 2.53e-28

nickel transporter ATP-binding protein NikD; Provisional


Pssm-ID: 236688 [Multi-domain]  Cd Length: 254  Bit Score: 107.86  E-value: 2.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLqkTFGATRVL-DGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAP----EAGRILWQGRPLDRAA-RARFLA 75
Cdd:PRK10418    5 IELRNI--ALQAAQPLvHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCAlRGRKIA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 gfgmlfqgaalfdslSVWQN--VAFRLRQRMSDD-----RARGIA------LDKLARVGLG--PETADLMPAELSGGMAK 140
Cdd:PRK10418   83 ---------------TIMQNprSAFNPLHTMHTHaretcLALGKPaddatlTAALEAVGLEnaARVLKLYPFEMSGGMLQ 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 141 RAGLARAIADDPQIIFFDEPTTGLDPI-RARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:PRK10418  148 RMMIALALLCEAPFIIADEPTTDLDVVaQARILD-LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226
                         250
                  ....*....|
gi 1608348115 220 GMDAAPALAA 229
Cdd:PRK10418  227 TLFNAPKHAV 236
PRK13537 PRK13537
nodulation factor ABC transporter ATP-binding protein NodI;
2-216 3.02e-28

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237420 [Multi-domain]  Cd Length: 306  Bit Score: 108.74  E-value: 3.02e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARflAGFGML 80
Cdd:PRK13537    8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVpSRARHAR--QRVGVV 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQ---RMSDDRARGIALDKLARVglgPETADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:PRK13537   86 PQFDNLDPDFTVRENLLVFGRYfglSAAAARALVPPLLEFAKL---ENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVTeTGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13537  163 DEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
PRK13651 PRK13651
cobalt transporter ATP-binding subunit; Provisional
2-216 3.57e-28

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184210 [Multi-domain]  Cd Length: 305  Bit Score: 108.63  E-value: 3.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGAT-----RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQ--------------- 61
Cdd:PRK13651    3 IKVKNIVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIfkdeknkkktkekek 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  62 -------GRPLDR------AARARFlagfGMLFQGA--ALFDSlSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGPE 125
Cdd:PRK13651   83 vleklviQKTRFKkikkikEIRRRV----GVVFQFAeyQLFEQ-TIEKDIIFGPVSMgVSKEEAKKRAAKYIELVGLDES 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 126 TADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIdALIRGIVTETGATALTITHDMASVARIGDRVA 205
Cdd:PRK13651  158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
                         250
                  ....*....|.
gi 1608348115 206 LLQGGRIVHDG 216
Cdd:PRK13651  237 FFKDGKIIKDG 247
cbiO PRK13637
energy-coupling factor transporter ATPase;
2-219 5.67e-28

energy-coupling factor transporter ATPase;


Pssm-ID: 237455 [Multi-domain]  Cd Length: 287  Bit Score: 107.83  E-value: 5.67e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGL-----QKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-RPLDRAARARFL- 74
Cdd:PRK13637    3 IKIENLthiymEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvDITDKKVKLSDIr 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 AGFGMLFQ--GAALFDSlSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLGPET-ADLMPAELSGGMAKRAGLARAIAD 150
Cdd:PRK13637   83 KKVGLVFQypEYQLFEE-TIEKDIAFGPINLgLSEEEIENRVKRAMNIVGLDYEDyKDKSPFELSGGQKRRVAIAGVVAM 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:PRK13637  162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
CydD COG4988
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...
2-219 6.77e-28

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444012 [Multi-domain]  Cd Length: 563  Bit Score: 111.00  E-value: 6.77e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:COG4988   337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWV 416
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFdSLSVWQNVAFrLRQRMSDDRARgialDKLARVGLGPETADLmP-----------AELSGGMAKRAGLARAIA 149
Cdd:COG4988   417 PQNPYLF-AGTIRENLRL-GRPDASDEELE----AALEAAGLDEFVAAL-PdgldtplgeggRGLSGGQAQRLALARALL 489
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 150 DDPQIIFFDEPTTGLDPIRARAIDALIRGIVteTGATALTITHDMASVARIgDRVALLQGGRIVHDGPVA 219
Cdd:COG4988   490 RDAPLLLLDEPTAHLDAETEAEILQALRRLA--KGRTVILITHRLALLAQA-DRILVLDDGRIVEQGTHE 556
COG4586 COG4586
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-221 6.96e-28

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443643 [Multi-domain]  Cd Length: 323  Bit Score: 108.25  E-value: 6.96e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----------GATR-----------VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIL 59
Cdd:COG4586     1 IIEVENLSKTYrvyekepglkGALKglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  60 WQGR-PLDRaaRARFLAGFGMLF-QGAALFDSLSVWQNvaFRLRQRM---SDDRARGiALDKLARV-GLGpetaDLM--P 131
Cdd:COG4586    81 VLGYvPFKR--RKEFARRIGVVFgQRSQLWWDLPAIDS--FRLLKAIyriPDAEYKK-RLDELVELlDLG----ELLdtP 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 132 A-ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGG 210
Cdd:COG4586   152 VrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHG 231
                         250
                  ....*....|.
gi 1608348115 211 RIVHDGPVAGM 221
Cdd:COG4586   232 RIIYDGSLEEL 242
PRK10908 PRK10908
cell division ATP-binding protein FtsE;
1-216 7.20e-28

cell division ATP-binding protein FtsE;


Pssm-ID: 182829 [Multi-domain]  Cd Length: 222  Bit Score: 105.73  E-value: 7.20e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARAR--FL-AG 76
Cdd:PRK10908    1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREvpFLrRQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGAALFDSLSVWQNVAFRL----------RQRMSddrargIALDKlarVGLgPETADLMPAELSGGMAKRAGLAR 146
Cdd:PRK10908   81 IGMIFQDHHLLMDRTVYDNVAIPLiiagasgddiRRRVS------AALDK---VGL-LDKAKNFPIQLSGGEQQRVGIAR 150
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 147 AIADDPQIIFFDEPTTGLDpiraraiDALIRGIV------TETGATALTITHDMASVARIGDRVALLQGGRIV--HDG 216
Cdd:PRK10908  151 AVVNKPAVLLADEPTGNLD-------DALSEGILrlfeefNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHggVGG 221
PRK09984 PRK09984
phosphonate ABC transporter ATP-binding protein;
1-216 1.44e-27

phosphonate ABC transporter ATP-binding protein;


Pssm-ID: 182182 [Multi-domain]  Cd Length: 262  Bit Score: 106.25  E-value: 1.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL----EAPEAgRILWQGRPLDRAAR-ARFL- 74
Cdd:PRK09984    4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgdKSAGS-HIELLGRTVQREGRlARDIr 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 ---AGFGMLFQGAALFDSLSVWQNV-------------AFRLRQRMSDDRArgiaLDKLARVGLGpETADLMPAELSGGM 138
Cdd:PRK09984   83 ksrANTGYIFQQFNLVNRLSVLENVligalgstpfwrtCFSWFTREQKQRA----LQALTRVGMV-HFAHQRVSTLSGGQ 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 139 AKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK09984  158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
cbiO PRK13643
energy-coupling factor transporter ATPase;
13-216 1.60e-27

energy-coupling factor transporter ATPase;


Pssm-ID: 184203 [Multi-domain]  Cd Length: 288  Bit Score: 106.74  E-value: 1.60e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  13 ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----GFGMLFQ--GAAL 86
Cdd:PRK13643   18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKpvrkKVGVVFQfpESQL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  87 FDSlSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:PRK13643   98 FEE-TVLKDVAFGPQNfGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 166 PiRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13643  177 P-KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226
ugpC PRK11650
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
1-212 2.26e-27

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;


Pssm-ID: 236947 [Multi-domain]  Cd Length: 356  Bit Score: 107.24  E-value: 2.26e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-GATRVLDGVDLTVGQGEsLCVI-GQSGTGKSVLLKCILGLEAPEAGRILWQGR------PLDRaarar 72
Cdd:PRK11650    3 GLKLQAVRKSYdGKTQVIKGIDLDVADGE-FIVLvGPSGCGKSTLLRMVAGLERITSGEIWIGGRvvnelePADR----- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 flaGFGMLFQGAALFDSLSVWQNVAFRLRQR-MS-DDRARGIAldKLAR-VGLGPeTADLMPAELSGGMAKRAGLARAIA 149
Cdd:PRK11650   77 ---DIAMVFQNYALYPHMSVRENMAYGLKIRgMPkAEIEERVA--EAARiLELEP-LLDRKPRELSGGQRQRVAMGRAIV 150
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 150 DDPQIIFFDEPTTGLDP-IRArAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:PRK11650  151 REPAVFLFDEPLSNLDAkLRV-QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213
cbiO PRK13636
cobalt transporter ATP-binding subunit; Provisional
14-223 2.78e-27

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184196 [Multi-domain]  Cd Length: 283  Bit Score: 105.70  E-value: 2.78e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARA--RFLAGFGMLFQGA--ALFdS 89
Cdd:PRK13636   19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGlmKLRESVGMVFQDPdnQLF-S 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  90 LSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:PRK13636   98 ASVYQDVSFgAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 169 ARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDA 223
Cdd:PRK13636  177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
livG PRK11300
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
1-216 3.95e-27

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional


Pssm-ID: 183080 [Multi-domain]  Cd Length: 255  Bit Score: 104.69  E-value: 3.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARfLAGFGML 80
Cdd:PRK11300    5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ-IARMGVV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 --FQGAALFDSLSVWQNV--------------------AFRLRQRMSDDRArgiaLDKLARVGLGpETADLMPAELSGGM 138
Cdd:PRK11300   84 rtFQHVRLFREMTVIENLlvaqhqqlktglfsgllktpAFRRAESEALDRA----ATWLERVGLL-EHANRQAGNLAYGQ 158
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 139 AKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK11300  159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
cbiO PRK13632
cobalt transporter ATP-binding subunit; Provisional
1-216 4.63e-27

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237452 [Multi-domain]  Cd Length: 271  Bit Score: 105.07  E-value: 4.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLqkTFGATR----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAG 76
Cdd:PRK13632    7 MIKVENV--SFSYPNsennALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGA-ALFDSLSVWQNVAFRLRQRMSD-DRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:PRK13632   85 IGIIFQNPdNQFIGATVEDDIAFGLENKKVPpKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEI 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVArIGDRVALLQGGRIVHDG 216
Cdd:PRK13632  164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224
PRK14267 PRK14267
phosphate ABC transporter ATP-binding protein; Provisional
2-217 4.73e-27

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184596 [Multi-domain]  Cd Length: 253  Bit Score: 104.54  E-value: 4.73e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCI-----LGLEAPEAGRILWQGR----PLDRAARAR 72
Cdd:PRK14267    5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFnrlleLNEEARVEGEVRLFGRniysPDVDPIEVR 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 flAGFGMLFQGAALFDSLSVWQNVAFRLR-------QRMSDDRARGiALDKLArvgLGPETADLM---PAELSGGMAKRA 142
Cdd:PRK14267   85 --REVGMVFQYPNPFPHLTIYDNVAIGVKlnglvksKKELDERVEW-ALKKAA---LWDEVKDRLndyPSNLSGGQRQRL 158
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 143 GLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK14267  159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231
cbiO PRK13646
energy-coupling factor transporter ATPase;
17-213 6.09e-27

energy-coupling factor transporter ATPase;


Pssm-ID: 184205 [Multi-domain]  Cd Length: 286  Bit Score: 104.86  E-value: 6.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFL----AGFGMLFQ--GAALFDSl 90
Cdd:PRK13646   23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIrpvrKRIGMVFQfpESQLFED- 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 SVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRA 169
Cdd:PRK13646  102 TVEREIIFGPKNfKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348115 170 RAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIV 213
Cdd:PRK13646  182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
ModF COG1119
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ...
1-232 6.47e-27

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];


Pssm-ID: 440736 [Multi-domain]  Cd Length: 250  Bit Score: 104.01  E-value: 6.47e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAG---RILwqGRPLDRAA----RARF 73
Cdd:COG1119     3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGndvRLF--GERRGGEDvwelRKRI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 laGF-----GMLFQGA---------ALFDSLSVWQNVafrlrqrmsDDRARGIALDKLARVGLGpETADLMPAELSGGMA 139
Cdd:COG1119    81 --GLvspalQLRFPRDetvldvvlsGFFDSIGLYREP---------TDEQRERARELLELLGLA-HLADRPFGTLSQGEQ 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 140 KRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:COG1119   149 RRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKE 228
                         250
                  ....*....|...
gi 1608348115 220 GMDAAPALAAFLG 232
Cdd:COG1119   229 EVLTSENLSEAFG 241
lolD PRK11629
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
14-209 7.48e-27

lipoprotein-releasing ABC transporter ATP-binding protein LolD;


Pssm-ID: 183244 [Multi-domain]  Cd Length: 233  Bit Score: 103.36  E-value: 7.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARARFL-AGFGMLFQGAALFDS 89
Cdd:PRK11629   22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKlssAAKAELRnQKLGFIYQFHHLLPD 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  90 LSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:PRK11629  102 FTALENVAMPLLiGKKKPAEINSRALEMLAAVGL-EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1608348115 169 ARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG 209
Cdd:PRK11629  181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221
fecE PRK11231
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
1-216 1.27e-26

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;


Pssm-ID: 183044 [Multi-domain]  Cd Length: 255  Bit Score: 103.56  E-value: 1.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAAR--ARFLAgf 77
Cdd:PRK11231    2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIsMLSSRqlARRLA-- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gMLFQGAALFDSLSVWQNVAF------RLRQRMS-DDRAR-GIALDKLARVGLgpetADLMPAELSGGMAKRAGLARAIA 149
Cdd:PRK11231   80 -LLPQHHLTPEGITVRELVAYgrspwlSLWGRLSaEDNARvNQAMEQTRINHL----ADRRLTDLSGGQRQRAFLAMVLA 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 150 DDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK11231  155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
PRK14239 PRK14239
phosphate transporter ATP-binding protein; Provisional
1-226 1.80e-26

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184585 [Multi-domain]  Cd Length: 252  Bit Score: 102.93  E-value: 1.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCI-----LGLEAPEAGRILWQGRPL--DRAARARF 73
Cdd:PRK14239    5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndLNPEVTITGSIVYNGHNIysPRTDTVDL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 LAGFGMLFQGAALFdSLSVWQNVAFRLRQRMSDDRARgiaLDK-----LARVGLGPETADLMPAE---LSGGMAKRAGLA 145
Cdd:PRK14239   85 RKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQV---LDEaveksLKGASIWDEVKDRLHDSalgLSGGQQQRVCIA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 146 RAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:PRK14239  161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238

                  .
gi 1608348115 226 A 226
Cdd:PRK14239  239 K 239
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
4-212 2.81e-26

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 106.30  E-value: 2.81e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRpldraARARFLAgfgmlfQG 83
Cdd:COG0488     1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG-----LRIGYLP------QE 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  84 AALFDSLSVWQNVA-------------FRLRQRMSDDRARGIALDKL-------------ARV-------GLGPETADLM 130
Cdd:COG0488    70 PPLDDDLTVLDTVLdgdaelraleaelEELEAKLAEPDEDLERLAELqeefealggweaeARAeeilsglGFPEEDLDRP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 131 PAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpirARAIDALIRGIVTETGaTALTITHDMASVARIGDRVALLQGG 210
Cdd:COG0488   150 VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD---LESIEWLEEFLKNYPG-TVLVVSHDRYFLDRVATRILELDRG 225

                  ..
gi 1608348115 211 RI 212
Cdd:COG0488   226 KL 227
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
2-216 5.17e-26

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 105.65  E-value: 5.17e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEA--PEAGRIL----------WQGRP----- 64
Cdd:TIGR03269   1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIIyhvalcekcgYVERPskvge 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  65 ------------------LDRAARARFLAGFGMLFQGA-ALFDSLSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLGP 124
Cdd:TIGR03269  81 pcpvcggtlepeevdfwnLSDKLRRRIRKRIAIMLQRTfALYGDDTVLDNVLEALEEiGYEGKEAVGRAVDLIEMVQLSH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 125 ETADLmPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRV 204
Cdd:TIGR03269 161 RITHI-ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
                         250
                  ....*....|..
gi 1608348115 205 ALLQGGRIVHDG 216
Cdd:TIGR03269 240 IWLENGEIKEEG 251
cbiO PRK13639
cobalt transporter ATP-binding subunit; Provisional
1-216 5.84e-26

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184199 [Multi-domain]  Cd Length: 275  Bit Score: 102.08  E-value: 5.84e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL--DRAARARFLAGF 77
Cdd:PRK13639    1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIkyDKKSLLEVRKTV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGA--ALFdSLSVWQNVAF-RLRQRMSDDRARGIALDKLARVGL-GPEtaDLMPAELSGGMAKRAGLARAIADDPQ 153
Cdd:PRK13639   81 GIVFQNPddQLF-APTVEEDVAFgPLNLGLSKEEVEKRVKEALKAVGMeGFE--NKPPHHLSGGQKKRVAIAGILAMKPE 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 154 IIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13639  158 IIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
cbiO PRK13652
cobalt transporter ATP-binding subunit; Provisional
1-229 5.92e-26

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 172200 [Multi-domain]  Cd Length: 277  Bit Score: 102.19  E-value: 5.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGM 79
Cdd:PRK13652    3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGA--ALFdSLSVWQNVAFRLRQRMSDDRARGIALDKLAR-VGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:PRK13652   83 VFQNPddQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHmLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAA 229
Cdd:PRK13652  161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
LPS_export_lptB TIGR04406
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ...
4-225 8.94e-26

LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 275199 [Multi-domain]  Cd Length: 239  Bit Score: 100.81  E-value: 8.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRA---ARARflAGFGML 80
Cdd:TIGR04406   4 AENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLpmhERAR--LGIGYL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:TIGR04406  82 PQEASIFRKLTVEENImaVLEIRKDLDRAEREERLEALLEEFQIS-HLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 159 EPTTGLDPIRARAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIK-HLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANE 226
ABCC_Hemolysin cd03252
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ...
16-216 9.81e-26

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.


Pssm-ID: 213219 [Multi-domain]  Cd Length: 237  Bit Score: 100.64  E-value: 9.81e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLSVWQN 95
Cdd:cd03252    17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIRDN 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFrlrQRMSDDRARGIALDKLAR----VGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPI 167
Cdd:cd03252    96 IAL---ADPGMSMERVIEAAKLAGahdfISELPEGYDTIVGEqgagLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 168 RARAIDALIRGIVteTGATALTITHDMASVaRIGDRVALLQGGRIVHDG 216
Cdd:cd03252   173 SEHAIMRNMHDIC--AGRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQG 218
btuD PRK09536
corrinoid ABC transporter ATPase; Reviewed
1-236 1.15e-25

corrinoid ABC transporter ATPase; Reviewed


Pssm-ID: 236554 [Multi-domain]  Cd Length: 402  Bit Score: 103.38  E-value: 1.15e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:PRK09536    3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAF-------RLRQRMSDDRArgiALDK-LARVGLGpETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:PRK09536   83 PQDTSLSFEFDVRQVVEMgrtphrsRFDTWTETDRA---AVERaMERTGVA-QFADRPVTSLSGGERQRVLLARALAQAT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLG 232
Cdd:PRK09536  159 PVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFD 237

                  ....
gi 1608348115 233 RSPA 236
Cdd:PRK09536  238 ARTA 241
PRK10070 PRK10070
proline/glycine betaine ABC transporter ATP-binding protein ProV;
7-216 1.59e-25

proline/glycine betaine ABC transporter ATP-binding protein ProV;


Pssm-ID: 182221 [Multi-domain]  Cd Length: 400  Bit Score: 103.19  E-value: 1.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTfGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFL----AGFGMLFQ 82
Cdd:PRK10070   35 LEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRevrrKKIAMVFQ 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSLSVWQNVAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:PRK10070  114 SFALMPHMTVLDNTAFGMElAGINAEERREKALDALRQVGL-ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 162 TGLDP-IRARAIDALIRgIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK10070  193 SALDPlIRTEMQDELVK-LQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247
ArpD COG4618
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ...
12-217 1.99e-25

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443660 [Multi-domain]  Cd Length: 563  Bit Score: 104.06  E-value: 1.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSl 90
Cdd:COG4618   342 GSKRpILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYLPQDVELFDG- 420
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 SVWQNVAfrlrqRMSD-DRARGIALDKLARV-----GLgPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:COG4618   421 TIAENIA-----RFGDaDPEKVVAAAKLAGVhemilRL-PDGYDTRIGEggarLSGGQRQRIGLARALYGDPRLVVLDEP 494
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 161 TTGLDpirARAIDALIRGIVT--ETGATALTITHDMaSVARIGDRVALLQGGRIVHDGP 217
Cdd:COG4618   495 NSNLD---DEGEAALAAAIRAlkARGATVVVITHRP-SLLAAVDKLLVLRDGRVQAFGP 549
dppF PRK11308
dipeptide transporter ATP-binding subunit; Provisional
5-225 2.40e-25

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 236898 [Multi-domain]  Cd Length: 327  Bit Score: 101.58  E-value: 2.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   5 RGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARFLAGFGMLF 81
Cdd:PRK11308   19 RGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLlkaDPEAQKLLRQKIQIVF 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAalFDSLSVWQNVAFRLRQRM----SDDRA--RGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:PRK11308   99 QNP--YGSLNPRKKVGQILEEPLlintSLSAAerREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 156 FFDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:PRK11308  177 VADEPVSALDvSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
cbiO PRK13650
energy-coupling factor transporter ATPase;
17-212 3.63e-25

energy-coupling factor transporter ATPase;


Pssm-ID: 184209 [Multi-domain]  Cd Length: 279  Bit Score: 100.19  E-value: 3.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGA-ALFDSLSVWQN 95
Cdd:PRK13650   23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPdNQFVGATVEDD 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLR-QRMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDA 174
Cdd:PRK13650  103 VAFGLEnKGIPHEEMKERVNEALELVGM-QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1608348115 175 LIRGIVTETGATALTITHDMASVArIGDRVALLQGGRI 212
Cdd:PRK13650  182 TIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV 218
cbiO PRK13649
energy-coupling factor transporter ATPase;
15-216 3.90e-25

energy-coupling factor transporter ATPase;


Pssm-ID: 184208 [Multi-domain]  Cd Length: 280  Bit Score: 100.20  E-value: 3.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGF----GMLFQGA--ALFD 88
Cdd:PRK13649   21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIrkkvGLVFQFPesQLFE 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  89 SlSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPI 167
Cdd:PRK13649  101 E-TVLKDVAFGPQNfGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 168 RARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13649  180 GRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
cbiO PRK13641
energy-coupling factor transporter ATPase;
17-217 5.81e-25

energy-coupling factor transporter ATPase;


Pssm-ID: 237456 [Multi-domain]  Cd Length: 287  Bit Score: 99.90  E-value: 5.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGF----GMLFQ--GAALFDSl 90
Cdd:PRK13641   23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLrkkvSLVFQfpEAQLFEN- 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 SVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPiRA 169
Cdd:PRK13641  102 TVLKDVEFGPKNfGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP-EG 180
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 170 RAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIV-HDGP 217
Cdd:PRK13641  181 RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIkHASP 229
MdlB COG1132
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
12-217 7.03e-25

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 102.55  E-value: 7.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLS 91
Cdd:COG1132   351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQDTFLF-SGT 429
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAFRlRQRMSDDRARGIAldKLARVGlgpETADLMP-----------AELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:COG1132   430 IRENIRYG-RPDATDEEVEEAA--KAAQAH---EFIEALPdgydtvvgergVNLSGGQRQRIAIARALLKDPPILILDEA 503
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 161 TTGLDP-----IRaRAIDALIRgivtetGATALTITHDMASVARiGDRVALLQGGRIVHDGP 217
Cdd:COG1132   504 TSALDTetealIQ-EALERLMK------GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGT 557
PRK10247 PRK10247
putative ABC transporter ATP-binding protein YbbL; Provisional
12-208 1.08e-24

putative ABC transporter ATP-binding protein YbbL; Provisional


Pssm-ID: 182331 [Multi-domain]  Cd Length: 225  Bit Score: 97.48  E-value: 1.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlS 91
Cdd:PRK10247   18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-T 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAF--RLRQRMSDDRArgiALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRA 169
Cdd:PRK10247   97 VYDNLIFpwQIRNQQPDPAI---FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK 173
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1608348115 170 RAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQ 208
Cdd:PRK10247  174 HNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITLQ 211
PRK14246 PRK14246
phosphate ABC transporter ATP-binding protein; Provisional
16-216 1.18e-24

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172734 [Multi-domain]  Cd Length: 257  Bit Score: 98.20  E-value: 1.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL------EAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDS 89
Cdd:PRK14246   25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLieiydsKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  90 LSVWQNVAFRLRQRMSDDR--ARGIALDKLARVGLGPETADLM--PA-ELSGGMAKRAGLARAIADDPQIIFFDEPTTGL 164
Cdd:PRK14246  105 LSIYDNIAYPLKSHGIKEKreIKKIVEECLRKVGLWKEVYDRLnsPAsQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 165 DPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK14246  185 DIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYNGELVEWG 234
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
1-214 1.24e-24

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 101.68  E-value: 1.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWqGRPLDraararflagFGML 80
Cdd:COG0488   315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVK----------IGYF 383
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFD-SLSVWQNVAfRLRQRMSDDRARGIaldkLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:COG0488   384 DQHQEELDpDKTVLDELR-DGAPGGTEQEVRGY----LGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDE 458
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 160 PTTGLDPiraRAIDALIRGIVTETGaTALTITHDMASVARIGDRVALLQGGRIVH 214
Cdd:COG0488   459 PTNHLDI---ETLEALEEALDDFPG-TVLLVSHDRYFLDRVATRILEFEDGGVRE 509
PRK14271 PRK14271
phosphate ABC transporter ATP-binding protein; Provisional
11-228 1.84e-24

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172759 [Multi-domain]  Cd Length: 276  Bit Score: 98.24  E-value: 1.84e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  11 FGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAP-----EAGRILWQGRPL-DRAARARFLAGFGMLFQGA 84
Cdd:PRK14271   31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIfNYRDVLEFRRRVGMLFQRP 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 ALFdSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGPETADLM---PAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK14271  111 NPF-PMSIMDNVlaGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQQQLLCLARTLAVNPEVLLLDE 189
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALA 228
Cdd:PRK14271  190 PTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHA 256
ABCC_cytochrome_bd cd03247
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ...
2-216 3.11e-24

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.


Pssm-ID: 213214 [Multi-domain]  Cd Length: 178  Bit Score: 95.07  E-value: 3.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFG--ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAgFGM 79
Cdd:cd03247     1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL-ISV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSlSVWQNVAFRlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03247    80 LNQRPYLFDT-TLRNNLGRR----------------------------------FSGGERQRLALARILLQDAPIVLLDE 124
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGiVTEtGATALTITHDMASVARIgDRVALLQGGRIVHDG 216
Cdd:cd03247   125 PTVGLDPITERQLLSLIFE-VLK-DKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
PRK14258 PRK14258
phosphate ABC transporter ATP-binding protein; Provisional
2-209 5.38e-24

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184593 [Multi-domain]  Cd Length: 261  Bit Score: 96.64  E-value: 5.38e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCI-----LGLEAPEAGRILWQGRPL--DRAARARFL 74
Cdd:PRK14258    8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLnrmneLESEVRVEGRVEFFNQNIyeRRVNLNRLR 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 AGFGMLFQGAALFdSLSVWQNVAFRL-----RQRMSDDrarGIALDKLARVGLGPETADLM---PAELSGGMAKRAGLAR 146
Cdd:PRK14258   88 RQVSMVHPKPNLF-PMSVYDNVAYGVkivgwRPKLEID---DIVESALKDADLWDEIKHKIhksALDLSGGQQQRLCIAR 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 147 AIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG 209
Cdd:PRK14258  164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226
PRK10535 PRK10535
macrolide ABC transporter ATP-binding protein/permease MacB;
1-217 6.21e-24

macrolide ABC transporter ATP-binding protein/permease MacB;


Pssm-ID: 182528 [Multi-domain]  Cd Length: 648  Bit Score: 99.80  E-value: 6.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKcILG-LEAPEAGRILWQGR---PLDRAARAR 72
Cdd:PRK10535    4 LLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGcLDKPTSGTYRVAGQdvaTLDADALAQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FL-AGFGMLFQGAALFDSLSVWQNV---AFRLRQRMSDDRARGIALdkLARVGLGpETADLMPAELSGGMAKRAGLARAI 148
Cdd:PRK10535   83 LRrEHFGFIFQRYHLLSHLTAAQNVevpAVYAGLERKQRLLRAQEL--LQRLGLE-DRVEYQPSQLSGGQQQRVSIARAL 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDmASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK10535  160 MNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVRNPP 226
cbiO PRK13631
cobalt transporter ATP-binding subunit; Provisional
8-216 6.84e-24

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237451 [Multi-domain]  Cd Length: 320  Bit Score: 97.61  E-value: 6.84e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   8 QKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRI------------------LWQGRPLDRAA 69
Cdd:PRK13631   33 EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdiyigdkknnhelitNPYSKKIKNFK 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 RARFLAGFGMLFQGAALFDSlSVWQNVAF---RLRQrmSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLAR 146
Cdd:PRK13631  113 ELRRRVSMVFQFPEYQLFKD-TIEKDIMFgpvALGV--KKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAG 189
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 147 AIADDPQIIFFDEPTTGLDPIRARAIDALIRGiVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13631  190 ILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
ABCG_White cd03234
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ...
15-216 7.21e-24

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.


Pssm-ID: 213201 [Multi-domain]  Cd Length: 226  Bit Score: 95.42  E-value: 7.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA---GRILWQGRPLDRAaraRFLAGFGMLFQGAALFDSLS 91
Cdd:cd03234    21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRKPD---QFQKCVAYVRQDDILLPGLT 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAF----RLRQRMSDDRARGIALDK-LARVGLGPETADLMPAeLSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:cd03234    98 VRETLTYtailRLPRKSSDAIRKKRVEDVlLRDLALTRIGGNLVKG-ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 167 IRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03234   177 FTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
ABCC_bacteriocin_exporters cd03245
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ...
16-216 1.70e-23

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.


Pssm-ID: 213212 [Multi-domain]  Cd Length: 220  Bit Score: 94.19  E-value: 1.70e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLSVWQN 95
Cdd:cd03245    19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF-YGTLRDN 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAfrLRQRMSDDR-----ARGIALDKLARvgLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLD- 165
Cdd:cd03245    98 IT--LGAPLADDErilraAELAGVTDFVN--KHPNGLDLQIGErgrgLSGGQRQAVALARALLNDPPILLLDEPTSAMDm 173
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 166 PIRARAIDALIRGIVTEtgaTALTITHDMaSVARIGDRVALLQGGRIVHDG 216
Cdd:cd03245   174 NSEERLKERLRQLLGDK---TLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
15-226 1.98e-23

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 98.24  E-value: 1.98e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL-EAPEA----GRILWQGRPLDRA--ARARFLAG--FGMLFQGAA 85
Cdd:PRK15134   23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLlPSPPVvypsGDIRFHGESLLHAseQTLRGVRGnkIAMIFQEPM 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 LfdSLSVWQNV------AFRLRQRMSDDRARGIALDKLARVGLGPETADL--MPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:PRK15134  103 V--SLNPLHTLekqlyeVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLtdYPHQLSGGERQRVMIAMALLTRPELLIA 180
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA 226
Cdd:PRK15134  181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPT 249
PRK11000 PRK11000
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
4-235 4.72e-23

maltose/maltodextrin ABC transporter ATP-binding protein MalK;


Pssm-ID: 182893 [Multi-domain]  Cd Length: 369  Bit Score: 95.87  E-value: 4.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR------PLDRaararflaGF 77
Cdd:PRK11000    6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKrmndvpPAER--------GV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRL---------RQRMSDDRARGIALDKLarvglgpetADLMPAELSGGMAKRAGLARAI 148
Cdd:PRK11000   78 GMVFQSYALYPHLSVAENMSFGLklagakkeeINQRVNQVAEVLQLAHL---------LDRKPKALSGGQRQRVAIGRTL 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA-- 226
Cdd:PRK11000  149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAnr 228
                         250
                  ....*....|
gi 1608348115 227 -LAAFLGrSP 235
Cdd:PRK11000  229 fVAGFIG-SP 237
dppD PRK11022
dipeptide transporter ATP-binding subunit; Provisional
15-225 4.90e-23

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 182906 [Multi-domain]  Cd Length: 326  Bit Score: 95.19  E-value: 4.90e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL-EAP---EAGRILWQGRPL----DRAARARFLAGFGMLFQGA-- 84
Cdd:PRK11022   21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLiDYPgrvMAEKLEFNGQDLqrisEKERRNLVGAEVAMIFQDPmt 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 ALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLgPETA---DLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK11022  101 SLNPCYTVGFQImeAIKVHQGGNKKTRRQRAIDLLNQVGI-PDPAsrlDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLD-PIRARAIDALIRGIVTETGATALtITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAP 225
Cdd:PRK11022  180 PTTALDvTIQAQIIELLLELQQKENMALVL-ITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP 245
AztA NF040873
zinc ABC transporter ATP-binding protein AztA;
11-206 6.07e-23

zinc ABC transporter ATP-binding protein AztA;


Pssm-ID: 468810 [Multi-domain]  Cd Length: 191  Bit Score: 91.91  E-value: 6.07e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  11 FGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIlwqgrpldRAARARFLAgfgMLFQGAALFDSL 90
Cdd:NF040873    2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------RRAGGARVA---YVPQRSEVPDSL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 --SVWQNVAF-----RLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTG 163
Cdd:NF040873   71 plTVRDLVAMgrwarRGLWRRLTRDDRAAVDDALERVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1608348115 164 LDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVAL 206
Cdd:NF040873  150 LDAESRERIIALLAEEH-ARGATVVVVTHDLELVRRADPCVLL 191
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
1-239 7.75e-23

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 96.27  E-value: 7.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRA--ARARFLaGFG 78
Cdd:PRK15439   11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLtpAKAHQL-GIY 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAFRLRQRMSDDR-------ARGIALDKLARVGLgPETADLMPAELsggmakRAGLARaiadD 151
Cdd:PRK15439   90 LVPQEPLLFPNLSVKENILFGLPKRQASMQkmkqllaALGCQLDLDSSAGS-LEVADRQIVEI------LRGLMR----D 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFL 231
Cdd:PRK15439  159 SRILILDEPTASLTPAETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAIT 237

                  ....*...
gi 1608348115 232 GRSPAQSA 239
Cdd:PRK15439  238 PAAREKSL 245
TagH COG1134
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ...
1-219 8.37e-23

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440749 [Multi-domain]  Cd Length: 245  Bit Score: 92.84  E-value: 8.37e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF-----------------GATR-----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRI 58
Cdd:COG1134     4 MIEVENVSKSYrlyhepsrslkelllrrRRTRreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  59 LWQGRpldraarARFLAGFGMLFQGaalfdSLSVWQNVAFRlrqrmsddrargialdklARV-GLGP-ETADLMP----- 131
Cdd:COG1134    84 EVNGR-------VSALLELGAGFHP-----ELTGRENIYLN------------------GRLlGLSRkEIDEKFDeivef 133
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 132 AEL-----------SGGMAKRAGLARAIADDPQIIFFDEPT-TGLDPIRARAIDAlIRGIVtETGATALTITHDMASVAR 199
Cdd:COG1134   134 AELgdfidqpvktySSGMRARLAFAVATAVDPDILLVDEVLaVGDAAFQKKCLAR-IRELR-ESGRTVIFVSHSMGAVRR 211
                         250       260
                  ....*....|....*....|
gi 1608348115 200 IGDRVALLQGGRIVHDGPVA 219
Cdd:COG1134   212 LCDRAIWLEKGRLVMDGDPE 231
cbiO PRK13647
cobalt transporter ATP-binding subunit; Provisional
2-216 1.39e-22

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237457 [Multi-domain]  Cd Length: 274  Bit Score: 93.26  E-value: 1.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:PRK13647    5 IEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGA--ALFdSLSVWQNVAF-----RLRQRMSDDRARgialDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQ 153
Cdd:PRK13647   85 FQDPddQVF-SSTVWDDVAFgpvnmGLDKDEVERRVE----EALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 154 IIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13647  159 VIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
27-217 1.54e-22

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 95.69  E-value: 1.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  27 GESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---GFGMLFQGAalFDSLSVWQNVAF----- 98
Cdd:PRK10261  350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAlrrDIQFIFQDP--YASLDPRQTVGDsimep 427
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  99 -RLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLD-PIRARAIDALI 176
Cdd:PRK10261  428 lRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDvSIRGQIINLLL 507
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1608348115 177 rGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK10261  508 -DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547
cbiO PRK13634
cobalt transporter ATP-binding subunit; Provisional
9-216 1.80e-22

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237454 [Multi-domain]  Cd Length: 290  Bit Score: 93.16  E-value: 1.80e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   9 KTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGF----GMLFQ-- 82
Cdd:PRK13634   15 KTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLrkkvGIVFQfp 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSlSVWQNVAF-RLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:PRK13634   95 EHQLFEE-TVEKDICFgPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 162 TGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13634  174 AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
PRK15112 PRK15112
peptide ABC transporter ATP-binding protein SapF;
1-225 2.25e-22

peptide ABC transporter ATP-binding protein SapF;


Pssm-ID: 185067 [Multi-domain]  Cd Length: 267  Bit Score: 92.55  E-value: 2.25e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATR-----VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD----- 66
Cdd:PRK15112    4 LLEVRNLSKTFryrtGWFRrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdys 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  67 -RAARARflagfgMLFQGAAlfDSLSVWQ------NVAFRLRQRMS-DDRARGIaLDKLARVGLGPETADLMPAELSGGM 138
Cdd:PRK15112   84 yRSQRIR------MIFQDPS--TSLNPRQrisqilDFPLRLNTDLEpEQREKQI-IETLRQVGLLPDHASYYPHMLAPGQ 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 139 AKRAGLARAIADDPQIIFFDEPTTGLD-PIRARAIDaLIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK15112  155 KQRLGLARALILRPKVIIADEALASLDmSMRSQLIN-LMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233

                  ....*...
gi 1608348115 218 VAGMDAAP 225
Cdd:PRK15112  234 TADVLASP 241
ABC_Carb_Monos_II cd03215
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ...
3-212 2.68e-22

Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213182 [Multi-domain]  Cd Length: 182  Bit Score: 90.18  E-value: 2.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQktfgATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFGML- 80
Cdd:cd03215     6 EVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrRSPRDAIRAGIAYVp 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 --FQGAALFDSLSVWQNVAfrlrqrmsddrargialdklarvglgpetadlMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:cd03215    82 edRKREGLVLDLSVAENIA--------------------------------LSSLLSGGNQQKVVLARWLARDPRVLILD 129
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 159 EPTTGLDpIRARA-IDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:cd03215   130 EPTRGVD-VGAKAeIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
CydD TIGR02857
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...
2-199 3.08e-22

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD


Pssm-ID: 274323 [Multi-domain]  Cd Length: 529  Bit Score: 94.66  E-value: 3.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTF-GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSlSVWQNVAFRLRQRMSDDRARGialdkLARVGLGPETADLM----------PAELSGGMAKRAGLARAIAD 150
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLARPDASDAEIREA-----LERAGLDEFVAALPqgldtpigegGAGLSGGQAQRLALARAFLR 475
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVteTGATALTITHDMASVAR 199
Cdd:TIGR02857 476 DAPLLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTHRLALAAL 522
ABC_CcmA_heme_exporter cd03231
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ...
2-194 5.53e-22

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.


Pssm-ID: 213198 [Multi-domain]  Cd Length: 201  Bit Score: 89.86  E-value: 5.53e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRaARARFLAGFGMLF 81
Cdd:cd03231     1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF-QRDSIARGLLYLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAFrlrqrMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:cd03231    80 HAPGIKTTLSVLENLRF-----WHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1608348115 162 TGLDPIRARAIDALIRGIVTETGATALTITHDM 194
Cdd:cd03231   154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186
ABCC_ATM1_transporter cd03253
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ...
16-217 6.63e-22

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213220 [Multi-domain]  Cd Length: 236  Bit Score: 90.37  E-value: 6.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:cd03253    16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGYN 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRlRQRMSDD---RARGIAL--DKLARVglgPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:cd03253    95 IRYG-RPDATDEeviEAAKAAQihDKIMRF---PDGYDTIVGErglkLSGGEKQRVAIARAILKNPPILLLDEATSALDT 170
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 167 IRARAIDALIRGIVteTGATALTITHDMASVARiGDRVALLQGGRIVHDGP 217
Cdd:cd03253   171 HTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
1-219 7.70e-22

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 93.70  E-value: 7.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARFlaGF 77
Cdd:PRK09700    5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkLDHKLAAQL--GI 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAF-RLRQR-------MSDDRARGIALDKLARVGLGPETaDLMPAELSGGMAKRAGLARAIA 149
Cdd:PRK09700   83 GIIYQELSVIDELTVLENLYIgRHLTKkvcgvniIDWREMRVRAAMMLLRVGLKVDL-DEKVANLSISHKQMLEIAKTLM 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 150 DDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVA 219
Cdd:PRK09700  162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230
ccmA TIGR01189
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ...
2-197 2.97e-21

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]


Pssm-ID: 273491 [Multi-domain]  Cd Length: 198  Bit Score: 87.80  E-value: 2.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLdraARARFLAGFGMLF 81
Cdd:TIGR01189   1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL---AEQRDEPHENILY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QG--AALFDSLSVWQNVAFRLRQRMSDDRArgiALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:TIGR01189  78 LGhlPGLKPELSALENLHFWAAIHGGAQRT---IEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDE 153
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASV 197
Cdd:TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
7-226 3.50e-21

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 91.69  E-value: 3.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEaGRILWQGRPLDRAARARFLA---GFGMLFQ- 82
Cdd:PRK15134  292 LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPvrhRIQVVFQd 370
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 -GAALFDSLSVWQNVAFRLR---------QRmsddRARGIALdkLARVGLGPETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:PRK15134  371 pNSSLNPRLNVLQIIEEGLRvhqptlsaaQR----EQQVIAV--MEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP 444
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA 226
Cdd:PRK15134  445 SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
2-218 5.54e-21

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 90.18  E-value: 5.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTG--KSVLLKCILGleaPEAGRILWQGRP--LDRAARARFLAGF 77
Cdd:NF000106   14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPWRF*TwcANRRALRRTIG*H 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAAlfDSLSVWQNVAFRLRQ-RMSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF000106   91 RPVR*GRR--ESFSGRENLYMIGR*lDLSRKDARARADELLERFSL-TEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLY 167
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPV 218
Cdd:NF000106  168 LDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKV 228
PRK13633 PRK13633
energy-coupling factor transporter ATPase;
16-216 7.24e-21

energy-coupling factor transporter ATPase;


Pssm-ID: 237453 [Multi-domain]  Cd Length: 280  Bit Score: 88.61  E-value: 7.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRI------------LWQGRplDRAararflagfGMLFQG 83
Cdd:PRK13633   25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVyvdgldtsdeenLWDIR--NKA---------GMVFQN 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  84 ------AALfdslsVWQNVAF----------RLRQRMSDdrargialdKLARVGLGpETADLMPAELSGGMAKRAGLARA 147
Cdd:PRK13633   94 pdnqivATI-----VEEDVAFgpenlgippeEIRERVDE---------SLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGI 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 148 IADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQGGRIVHDG 216
Cdd:PRK13633  159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEG 226
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
3-237 8.31e-21

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 90.46  E-value: 8.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLqktfGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFGML- 80
Cdd:COG1129   258 EVEGL----SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRiRSPRDAIRAGIAYVp 333
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 ----FQGaaLFDSLSVWQNVA------FRLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIAD 150
Cdd:COG1129   334 edrkGEG--LVLDLSIRENITlasldrLSRGGLLDRRRERALAEEYIKRLRIKTPSPEQPVGNLSGGNQQKVVLAKWLAT 411
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 151 DPQIIFFDEPTTGLDpIRARA-IDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAA 229
Cdd:COG1129   412 DPKVLILDEPTRGID-VGAKAeIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAA 489

                  ....*...
gi 1608348115 230 FLGRSPAQ 237
Cdd:COG1129   490 ATGGAAAA 497
cbiO PRK13640
energy-coupling factor transporter ATPase;
2-218 1.09e-20

energy-coupling factor transporter ATPase;


Pssm-ID: 184200 [Multi-domain]  Cd Length: 282  Bit Score: 87.93  E-value: 1.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR--VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA---GRILWQGRPLDRAARARFLAG 76
Cdd:PRK13640    6 VEFKHVSFTYPDSKkpALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVWDIREK 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  77 FGMLFQGA-ALFDSLSVWQNVAFRLRQR-MSDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQI 154
Cdd:PRK13640   86 VGIVFQNPdNQFVGATVGDDVAFGLENRaVPRPEMIKIVRDVLADVGM-LDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 155 IFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASvARIGDRVALLQGGRIV-HDGPV 218
Cdd:PRK13640  165 IILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-ANMADQVLVLDDGKLLaQGSPV 228
PRK13538 PRK13538
cytochrome c biogenesis heme-transporting ATPase CcmA;
1-206 2.65e-20

cytochrome c biogenesis heme-transporting ATPase CcmA;


Pssm-ID: 184125 [Multi-domain]  Cd Length: 204  Bit Score: 85.24  E-value: 2.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLdRAARARFLAgfGML 80
Cdd:PRK13538    1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI-RRQRDEYHQ--DLL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQG--AALFDSLSVWQNVAF--RLRQRMSDDRARgialDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:PRK13538   78 YLGhqPGIKTELTALENLRFyqRLHGPGDDEALW----EALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWI 152
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVAL 206
Cdd:PRK13538  153 LDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202
SapD COG4170
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
1-217 4.93e-20

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];


Pssm-ID: 443330 [Multi-domain]  Cd Length: 331  Bit Score: 86.88  E-value: 4.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPE----AGRILWQGRPLDR--AAR 70
Cdd:COG4170     3 LLDIRNLTIEIdtpqGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKlsPRE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  71 ARFLAG--FGMLFQ------------GAALFDSLSVWQnVAFRLRQRMSDDRARGIALdkLARVGLgPETADLM---PAE 133
Cdd:COG4170    83 RRKIIGreIAMIFQepsscldpsakiGDQLIEAIPSWT-FKGKWWQRFKWRKKRAIEL--LHRVGI-KDHKDIMnsyPHE 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIV 213
Cdd:COG4170   159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238

                  ....
gi 1608348115 214 HDGP 217
Cdd:COG4170   239 ESGP 242
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
3-234 5.02e-20

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 88.43  E-value: 5.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFGMLF 81
Cdd:PRK11288    6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRfASTTAALAAGVAIIY 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVAF-RLRQRM---SDDRARGIALDKLARVGLgpetaDLMP----AELSGGMAKRAGLARAIADDPQ 153
Cdd:PRK11288   86 QELHLVPEMTVAENLYLgQLPHKGgivNRRLLNYEAREQLEHLGV-----DIDPdtplKYLSIGQRQMVEIAKALARNAR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 154 IIFFDEPTTGLDpirARAIDALIRgIVTE---TGATALTITHDMASVARIGDRVALLQGGRIVHDGP-VAGMDAAPALAA 229
Cdd:PRK11288  161 VIAFDEPTSSLS---AREIEQLFR-VIRElraEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDdMAQVDRDQLVQA 236

                  ....*
gi 1608348115 230 FLGRS 234
Cdd:PRK11288  237 MVGRE 241
CydC TIGR02868
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ...
12-193 5.21e-20

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.


Pssm-ID: 274331 [Multi-domain]  Cd Length: 530  Bit Score: 88.19  E-value: 5.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlS 91
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-T 424
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAFRlRQRMSDDRArgiaLDKLARVGLGPETADL----------MPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:TIGR02868 425 VRENLRLA-RPDATDEEL----WAALERVGLADWLRALpdgldtvlgeGGARLSGGERQRLALARALLADAPILLLDEPT 499
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1608348115 162 TGLDPIRARAIDALIRGivTETGATALTITHD 193
Cdd:TIGR02868 500 EHLDAETADELLEDLLA--ALSGRTVVLITHH 529
cbiO PRK13644
energy-coupling factor transporter ATPase;
14-235 5.98e-20

energy-coupling factor transporter ATPase;


Pssm-ID: 106587 [Multi-domain]  Cd Length: 274  Bit Score: 86.19  E-value: 5.98e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGrpLDRAARARfLAGF----GMLFQGAAL-FD 88
Cdd:PRK13644   15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSK-LQGIrklvGIVFQNPETqFV 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  89 SLSVWQNVAF----------RLRQRMsdDRArgialdkLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK13644   92 GRTVEEDLAFgpenlclppiEIRKRV--DRA-------LAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVaRIGDRVALLQGGRIVHDGPVAGMDAAPALaAFLGRSP 235
Cdd:PRK13644  162 EVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVSL-QTLGLTP 235
cbiO PRK13645
energy-coupling factor transporter ATPase;
8-216 6.57e-20

energy-coupling factor transporter ATPase;


Pssm-ID: 184204 [Multi-domain]  Cd Length: 289  Bit Score: 86.22  E-value: 6.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   8 QKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQG-------RPLDRAARARFLAGFGML 80
Cdd:PRK13645   18 KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipanlKKIKEVKRLRKEIGLVFQ 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSlSVWQNVAFRLRQRMSDDRARGIALDKLAR-VGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK13645   98 FPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKlVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13645  177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
ABC_KpsT_Wzt cd03220
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ...
15-216 9.33e-20

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.


Pssm-ID: 213187 [Multi-domain]  Cd Length: 224  Bit Score: 84.51  E-value: 9.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPldraaraRFLAGFGMLFQGaalfdSLSVWQ 94
Cdd:cd03220    36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-------SSLLGLGGGFNP-----ELTGRE 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  95 NVAFRLR-QRMSDDRARgialDKLARV----GLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP-IR 168
Cdd:cd03220   104 NIYLNGRlLGLSRKEID----EKIDEIiefsELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAaFQ 178
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 169 ARAIDAlIRGIVtETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03220   179 EKCQRR-LRELL-KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
PRK10895 PRK10895
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
7-217 1.27e-19

lipopolysaccharide ABC transporter ATP-binding protein; Provisional


Pssm-ID: 182817 [Multi-domain]  Cd Length: 241  Bit Score: 84.56  E-value: 1.27e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRP---LDRAARARflAGFGMLFQG 83
Cdd:PRK10895    9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDislLPLHARAR--RGIGYLPQE 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  84 AALFDSLSVWQNV--AFRLRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:PRK10895   87 ASIFRRLSVYDNLmaVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 162 TGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALL-QGGRIVHDGP 217
Cdd:PRK10895  166 AGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVsQGHLIAHGTP 221
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
1-233 1.38e-19

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 87.19  E-value: 1.38e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL--EAPEAGRILWQGRPLD-RAARARFLAGF 77
Cdd:TIGR02633   1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGSPLKaSNIRDTERAGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 GMLFQGAALFDSLSVWQNVAFRLR-----QRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:TIGR02633  81 VIIHQELTLVPELSVAENIFLGNEitlpgGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLG 232
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG 239

                  .
gi 1608348115 233 R 233
Cdd:TIGR02633 240 R 240
cbiO PRK13648
cobalt transporter ATP-binding subunit; Provisional
17-216 1.83e-19

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184207 [Multi-domain]  Cd Length: 269  Bit Score: 84.42  E-value: 1.83e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAA-LFDSLSVWQN 95
Cdd:PRK13648   25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDnQFVGSIVKYD 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQRM-SDDRARGIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDA 174
Cdd:PRK13648  105 VAFGLENHAvPYDEMHRRVSEALKQVDM-LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1608348115 175 LIRGIVTETGATALTITHDMASVARiGDRVALLQGGRIVHDG 216
Cdd:PRK13648  184 LVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEG 224
PRK14243 PRK14243
phosphate transporter ATP-binding protein; Provisional
2-205 1.97e-19

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184588 [Multi-domain]  Cd Length: 264  Bit Score: 84.45  E-value: 1.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKC-------ILGLEApeAGRILWQGRPL-----DRAA 69
Cdd:PRK14243   11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndlIPGFRV--EGKVTFHGKNLyapdvDPVE 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 -RARFlagfGMLFQGAALFdSLSVWQNVAFRLR--------QRMSDDRARGIAL-----DKLARVGLGpetadlmpaeLS 135
Cdd:PRK14243   89 vRRRI----GMVFQKPNPF-PKSIYDNIAYGARingykgdmDELVERSLRQAALwdevkDKLKQSGLS----------LS 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 136 GGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARIGDRVA 205
Cdd:PRK14243  154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTA 221
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
3-192 1.99e-19

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 83.47  E-value: 1.99e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATR------VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLE--APEAGRILWQGRPLDRaararfl 74
Cdd:COG2401    26 RVAIVLEAFGVELrvveryVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFGR------- 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 agfgmlfqGAALFDSLSVWQNVAfrlrqrmsddrargIALDKLARVGLGpeTADLM---PAELSGGMAKRAGLARAIADD 151
Cdd:COG2401    99 --------EASLIDAIGRKGDFK--------------DAVELLNAVGLS--DAVLWlrrFKELSTGQKFRFRLALLLAER 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITH 192
Cdd:COG2401   155 PKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
SufC COG0396
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ...
3-227 2.95e-19

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440165 [Multi-domain]  Cd Length: 245  Bit Score: 83.58  E-value: 2.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEA--PEAGRILWQGRPL------DRAARARFL 74
Cdd:COG0396     2 EIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDIlelspdERARAGIFL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 AgfgmlFQ------GAALFDSLSVWQNVafRLRQRMSDDRARGIALDKLARVGLGPETADLMPAE-LSGGMAKRAGLARA 147
Cdd:COG0396    82 A-----FQypveipGVSVSNFLRTALNA--RRGEELSAREFLKLLKEKMKELGLDEDFLDRYVNEgFSGGEKKRNEILQM 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDpiraraIDALirGIVTET-------GATALTITHdmasVARIG-----DRVALLQGGRIVHD 215
Cdd:COG0396   155 LLLEPKLAILDETDSGLD------IDAL--RIVAEGvnklrspDRGILIITH----YQRILdyikpDFVHVLVDGRIVKS 222
                         250
                  ....*....|..
gi 1608348115 216 GpvaGMDAAPAL 227
Cdd:COG0396   223 G---GKELALEL 231
ABCC_TAP cd03248
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ...
13-212 5.67e-19

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.


Pssm-ID: 213215 [Multi-domain]  Cd Length: 226  Bit Score: 82.52  E-value: 5.67e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  13 ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLSV 92
Cdd:cd03248    26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLF-ARSL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  93 WQNVAFRLrQRMSDDRARGIAL-----DKLARVGLGPET-ADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:cd03248   105 QDNIAYGL-QSCSFECVKEAAQkahahSFISELASGYDTeVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1608348115 167 IRARAIDALIRGIVTETgaTALTITHDMASVARiGDRVALLQGGRI 212
Cdd:cd03248   184 ESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226
bacteriocin_ABC TIGR01193
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ...
16-216 7.00e-19

ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]


Pssm-ID: 130261 [Multi-domain]  Cd Length: 708  Bit Score: 85.18  E-value: 7.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILEN 567
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQRMSDD---RARGIA--LDKLARVGLGPETaDLMP--AELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:TIGR01193 568 LLLGAKENVSQDeiwAACEIAeiKDDIENMPLGYQT-ELSEegSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 169 ARAIdalIRGIVTETGATALTITHDMaSVARIGDRVALLQGGRIVHDG 216
Cdd:TIGR01193 647 EKKI---VNNLLNLQDKTIIFVAHRL-SVAKQSDKIIVLDHGKIIEQG 690
ABCF_EF-3 cd03221
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ...
2-211 7.71e-19

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.


Pssm-ID: 213188 [Multi-domain]  Cd Length: 144  Bit Score: 79.80  E-value: 7.71e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRpldraararflAGFGMLF 81
Cdd:cd03221     1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFE 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QgaalfdslsvwqnvafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:cd03221    70 Q---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 162 TGLDPiraRAIDALIRGIVTETGaTALTITHDMASVARIGDRVALLQGGR 211
Cdd:cd03221    99 NHLDL---ESIEALEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144
ABC_FeS_Assembly cd03217
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ...
2-218 1.03e-18

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.


Pssm-ID: 213184 [Multi-domain]  Cd Length: 200  Bit Score: 81.03  E-value: 1.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA--GRILWQGRPL-DRAARARFLAGFG 78
Cdd:cd03217     1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVteGEILFKGEDItDLPPEERARLGIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAAlfdslsvwqnvafrlrqrmsddRARGIALDKLAR-VGLGpetadlmpaeLSGGMAKRAGLARAIADDPQIIFF 157
Cdd:cd03217    81 LAFQYPP----------------------EIPGVKNADFLRyVNEG----------FSGGEKKRNEILQLLLLEPDLAIL 128
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVTEtGATALTITHdmasVARI-----GDRVALLQGGRIVHDGPV 218
Cdd:cd03217   129 DEPDSGLDIDALRLVAEVINKLREE-GKSVLIITH----YQRLldyikPDRVHVLYDGRIVKSGDK 189
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
17-216 1.78e-18

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 84.29  E-value: 1.78e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARArFLAGFGMLFQGAALFDSLSVWQNV 96
Cdd:TIGR01257  946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA-VRQSLGMCPQHNILFHHLTVAEHI 1024
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   97 AF--RLRQRmSDDRARGIALDKLARVGLGPETADlMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAI-D 173
Cdd:TIGR01257 1025 LFyaQLKGR-SWEEAQLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIwD 1102
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1608348115  174 ALIRgivTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:TIGR01257 1103 LLLK---YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
3-222 1.80e-18

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 83.92  E-value: 1.80e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   3 EIRGLQ-KTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGfGMLF 81
Cdd:COG3845   259 EVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRL-GVAY 337
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 -----QGAALFDSLSVWQNVAFRLRQR--------MSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAI 148
Cdd:COG3845   338 ipedrLGRGLVPDMSVAENLILGRYRRppfsrggfLDRKAIRAFAEELIEEFDVRTPGPDTPARSLSGGNQQKVILAREL 417
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 149 ADDPQIIFFDEPTTGLDP-----IRARAIDAlirgivTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMD 222
Cdd:COG3845   418 SRDPKLLIAAQPTRGLDVgaiefIHQRLLEL------RDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEAT 490
ABCG_EPDR cd03213
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ...
12-216 2.17e-18

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.


Pssm-ID: 213180 [Multi-domain]  Cd Length: 194  Bit Score: 79.90  E-value: 2.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEA--GRILWQGRPLDRAARARFLagfGMLFQGAALFDS 89
Cdd:cd03213    20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPLDKRSFRKII---GYVPQDDILHPT 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  90 LSVWQNVAF--RLRQrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPI 167
Cdd:cd03213    97 LTVRETLMFaaKLRG-------------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 168 RARAIDALIRGIVtETGATALTITHD-MASVARIGDRVALLQGGRIVHDG 216
Cdd:cd03213   146 SALQVMSLLRRLA-DTGRTIICSIHQpSSEIFELFDKLLLLSQGRVIYFG 194
PRK10575 PRK10575
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
16-232 2.62e-18

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;


Pssm-ID: 182561 [Multi-domain]  Cd Length: 265  Bit Score: 81.37  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSLSVWQN 95
Cdd:PRK10575   26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAF-------RLRQRMSDDRARgiALDKLARVGLGPETADLMPAeLSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:PRK10575  106 VAIgrypwhgALGRFGAADREK--VEEAISLVGLKPLAHRLVDS-LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 169 ARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLG 232
Cdd:PRK10575  183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYG 246
cbiO PRK13638
energy-coupling factor ABC transporter ATP-binding protein;
1-216 4.20e-18

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184198 [Multi-domain]  Cd Length: 271  Bit Score: 80.82  E-value: 4.20e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARArFLAgfgML 80
Cdd:PRK13638    1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRG-LLA---LR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDS-------LSVWQNVAFRLRQrmsddraRGIALDKLARvgLGPETADLMPAE---------LSGGMAKRAGL 144
Cdd:PRK13638   77 QQVATVFQDpeqqifyTDIDSDIAFSLRN-------LGVPEAEITR--RVDEALTLVDAQhfrhqpiqcLSHGQKKRVAI 147
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 145 ARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK13638  148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
1-233 5.26e-18

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 82.28  E-value: 5.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGE--SLCviGQSGTGKSVLLKCILGLeAPEA---GRILWQGRPLdraaRARFL- 74
Cdd:PRK13549    5 LLEMKNITKTFGGVKALDNVSLKVRAGEivSLC--GENGAGKSTLMKVLSGV-YPHGtyeGEIIFEGEEL----QASNIr 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  75 ----AGFGMLFQGAALFDSLSVWQNVaFRLRQ-----RMSDDRARGIALDKLARVGLgpetaDLMPA----ELSGGMAKR 141
Cdd:PRK13549   78 dterAGIAIIHQELALVKELSVLENI-FLGNEitpggIMDYDAMYLRAQKLLAQLKL-----DINPAtpvgNLGLGQQQL 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 142 AGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGM 221
Cdd:PRK13549  152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230
                         250
                  ....*....|..
gi 1608348115 222 DAAPALAAFLGR 233
Cdd:PRK13549  231 TEDDIITMMVGR 242
cbiO PRK13642
energy-coupling factor transporter ATPase;
17-216 6.19e-18

energy-coupling factor transporter ATPase;


Pssm-ID: 184202 [Multi-domain]  Cd Length: 277  Bit Score: 80.52  E-value: 6.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGA-ALFDSLSVWQN 95
Cdd:PRK13642   23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPdNQFVGATVEDD 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQRmsddrarGIALDKL-ARVGLGPETADLM------PAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:PRK13642  103 VAFGMENQ-------GIPREEMiKRVDEALLAVNMLdfktrePARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 169 ARAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQGGRIVHDG 216
Cdd:PRK13642  176 RQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEA 222
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
20-226 7.76e-18

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 82.21  E-value: 7.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  20 VDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR------------AARARFLAG--FGMLFQG-- 83
Cdd:PRK10261   35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRrsrqvielseqsAAQMRHVRGadMAMIFQEpm 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  84 AALFDSLSVWQNVA--FRLRQRMSDDRARGIALDKLARVGLgPETADLM---PAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK10261  115 TSLNPVFTVGEQIAesIRLHQGASREEAMVEAKRMLDQVRI-PEAQTILsryPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA 226
Cdd:PRK10261  194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQ 261
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
4-237 7.84e-18

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 82.08  E-value: 7.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFGMLFQ 82
Cdd:PRK10982    1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfKSSKEALENGISMVHQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  83 GAALFDSLSVWQNV---------AFRLRQRMSDDRAR-----GIALDKLARVglgpetadlmpAELSGGMAKRAGLARAI 148
Cdd:PRK10982   81 ELNLVLQRSVMDNMwlgryptkgMFVDQDKMYRDTKAifdelDIDIDPRAKV-----------ATLSVSQMQMIEIAKAF 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 149 ADDPQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALA 228
Cdd:PRK10982  150 SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIA 228

                  ....*....
gi 1608348115 229 AFLGRSPAQ 237
Cdd:PRK10982  229 MMVGRSLTQ 237
PRK13539 PRK13539
cytochrome c biogenesis protein CcmA; Provisional
1-192 2.12e-17

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 237421 [Multi-domain]  Cd Length: 207  Bit Score: 77.61  E-value: 2.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDR---AARARFLAgf 77
Cdd:PRK13539    2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDpdvAEACHYLG-- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  78 gmlfQGAALFDSLSVWQNVAFrlRQRMSDDRARGIAlDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:PRK13539   80 ----HRNAMKPALTVAENLEF--WAAFLGGEELDIA-AALEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1608348115 158 DEPTTGLDpiraRAIDALIRGIVT---ETGATALTITH 192
Cdd:PRK13539  152 DEPTAALD----AAAVALFAELIRahlAQGGIVIAATH 185
PRK15093 PRK15093
peptide ABC transporter ATP-binding protein SapD;
1-225 4.83e-17

peptide ABC transporter ATP-binding protein SapD;


Pssm-ID: 185049 [Multi-domain]  Cd Length: 330  Bit Score: 78.69  E-value: 4.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPE----AGRILWQGRPLDR-AARA 71
Cdd:PRK15093    3 LLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDIDLLRlSPRE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  72 RF-LAG--FGMLFQ------------GAALFDSLSVWQNVAfRLRQRMSDDRARGIALdkLARVGLgPETADLM---PAE 133
Cdd:PRK15093   83 RRkLVGhnVSMIFQepqscldpservGRQLMQNIPGWTYKG-RWWQRFGWRKRRAIEL--LHRVGI-KDHKDAMrsfPYE 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIV 213
Cdd:PRK15093  159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
                         250
                  ....*....|..
gi 1608348115 214 HDGPVAGMDAAP 225
Cdd:PRK15093  239 ETAPSKELVTTP 250
ABCC_Glucan_exporter_like cd03254
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ...
2-216 6.32e-17

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213221 [Multi-domain]  Cd Length: 229  Bit Score: 76.88  E-value: 6.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:cd03254     3 IEFENVNFSYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFdSLSVWQNVafrlrqRMSDDRARG---IALDKLAR----VGLGPETADLMPAE----LSGGMAKRAGLARAIA 149
Cdd:cd03254    83 LQDTFLF-SGTIMENI------RLGRPNATDeevIEAAKEAGahdfIMKLPNGYDTVLGEnggnLSQGERQLLAIARAML 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608348115 150 DDPQIIFFDEPTTGLDPIRARAIDALIRGIVteTGATALTITHDMASVaRIGDRVALLQGGRIVHDG 216
Cdd:cd03254   156 RDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTI-KNADKILVLDDGKIIEEG 219
ABCC_MsbA cd03251
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ...
16-216 6.98e-17

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213218 [Multi-domain]  Cd Length: 234  Bit Score: 76.89  E-value: 6.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:cd03251    17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAEN 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRlRQRMSDDRARgialdKLARVGLGPETADLMP-----------AELSGGMAKRAGLARAIADDPQIIFFDEPTTGL 164
Cdd:cd03251    96 IAYG-RPGATREEVE-----EAARAANAHEFIMELPegydtvigergVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 165 DPIRARAIDALIRGIVteTGATALTITHDMASVARIgDRVALLQGGRIVHDG 216
Cdd:cd03251   170 DTESERLVQAALERLM--KNRTTFVIAHRLSTIENA-DRIVVLEDGKIVERG 218
ABC_MTABC3_MDL1_MDL2 cd03249
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ...
16-216 7.16e-17

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.


Pssm-ID: 213216 [Multi-domain]  Cd Length: 238  Bit Score: 76.81  E-value: 7.16e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:cd03249    18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG-TIAEN 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQRMSDDRARGIaldKLAR-----VGLgPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:cd03249    97 IRYGKPDATDEEVEEAA---KKANihdfiMSL-PDGYDTLVGErgsqLSGGQKQRIAIARALLRNPKILLLDEATSALDA 172
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 167 ----IRARAIDALIRGIvtetgaTALTITHDMASVaRIGDRVALLQGGRIVHDG 216
Cdd:cd03249   173 esekLVQEALDRAMKGR------TTIVIAHRLSTI-RNADLIAVLQNGQVVEQG 219
oppD PRK09473
oligopeptide transporter ATP-binding component; Provisional
1-211 1.05e-16

oligopeptide transporter ATP-binding component; Provisional


Pssm-ID: 181888 [Multi-domain]  Cd Length: 330  Bit Score: 77.84  E-value: 1.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTF----GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEaGRI----LWQGR--------P 64
Cdd:PRK09473   12 LLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN-GRIggsaTFNGReilnlpekE 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  65 LDRAaRARFLAgfgMLFQGAalFDSLSVWQNVA------FRLRQRMSDDRARGIALDKLARVGLgPETADLM---PAELS 135
Cdd:PRK09473   91 LNKL-RAEQIS---MIFQDP--MTSLNPYMRVGeqlmevLMLHKGMSKAEAFEESVRMLDAVKM-PEARKRMkmyPHEFS 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 136 GGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGR 211
Cdd:PRK09473  164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
1-222 1.23e-16

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 78.51  E-value: 1.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFGM 79
Cdd:PRK10762    4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPKSSQEAGIGI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVaFRLRQRMSddRARGIALDK--------LARVGLgPETADLMPAELSGGMAKRAGLARAIADD 151
Cdd:PRK10762   84 IHQELNLIPQLTIAENI-FLGREFVN--RFGRIDWKKmyaeadklLARLNL-RFSSDKLVGELSIGEQQMVEIAKVLSFE 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIR-------GIVtetgatalTITHDMASVARIGDRVALLQGGRIVHDGPVAGMD 222
Cdd:PRK10762  160 SKVIIMDEPTDALTDTETESLFRVIRelksqgrGIV--------YISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229
znuC PRK09544
high-affinity zinc transporter ATPase; Reviewed
1-207 1.49e-16

high-affinity zinc transporter ATPase; Reviewed


Pssm-ID: 181939 [Multi-domain]  Cd Length: 251  Bit Score: 76.31  E-value: 1.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIlwqgrplDRAARARFlagfGML 80
Cdd:PRK09544    4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-------KRNGKLRI----GYV 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLRQRMSddraRGIALDKLARVglgpETADLMPA---ELSGGMAKRAGLARAIADDPQIIFF 157
Cdd:PRK09544   73 PQKLYLDTTLPLTVNRFLRLRPGTK----KEDILPALKRV----QAGHLIDApmqKLSGGETQRVLLARALLNRPQLLVL 144
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 158 DEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALL 207
Cdd:PRK09544  145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194
PRK10253 PRK10253
iron-enterobactin ABC transporter ATP-binding protein;
4-216 2.56e-16

iron-enterobactin ABC transporter ATP-binding protein;


Pssm-ID: 182336 [Multi-domain]  Cd Length: 265  Bit Score: 75.79  E-value: 2.56e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKT--FGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLF 81
Cdd:PRK10253    8 LRGEQLTlgYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNVA--------FRLRQRMSDDRARGIALDKLARVGLGPETADlmpaELSGGMAKRAGLARAIADDPQ 153
Cdd:PRK10253   88 QNATTPGDITVQELVArgryphqpLFTRWRKEDEEAVTKAMQATGITHLADQSVD----TLSGGQRQRAWIAMVLAQETA 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 154 IIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDG 216
Cdd:PRK10253  164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG 226
PRK15056 PRK15056
manganese/iron ABC transporter ATP-binding protein;
22-217 3.39e-16

manganese/iron ABC transporter ATP-binding protein;


Pssm-ID: 185016 [Multi-domain]  Cd Length: 272  Bit Score: 75.69  E-value: 3.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  22 LTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA----------GFGMLFQGAALfdsLS 91
Cdd:PRK15056   28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAyvpqseevdwSFPVLVEDVVM---MG 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNVAFrLRQRMSDDRArgIALDKLARVGLgPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARA 171
Cdd:PRK15056  105 RYGHMGW-LRRAKKRDRQ--IVTAALARVDM-VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1608348115 172 IDALIRGIVTEtGATALTITHDMASVARIGDRVALLQgGRIVHDGP 217
Cdd:PRK15056  181 IISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGP 224
modC PRK11144
molybdenum ABC transporter ATP-binding protein ModC;
1-244 9.40e-16

molybdenum ABC transporter ATP-binding protein ModC;


Pssm-ID: 182993 [Multi-domain]  Cd Length: 352  Bit Score: 75.30  E-value: 9.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRgLQKTFGATRvLDgVDLTV-GQGESlCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLA---- 75
Cdd:PRK11144    1 MLELN-FKQQLGDLC-LT-VNLTLpAQGIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPpekr 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  76 GFGMLFQGAALFDSLSVWQNVAFRLRQRMSDDRARGIALdklarVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQII 155
Cdd:PRK11144   77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL-----LGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELL 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 156 FFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLGRSp 235
Cdd:PRK11144  151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWLPKE- 229

                  ....*....
gi 1608348115 236 AQSAGFAAP 244
Cdd:PRK11144  230 EQSSILKVT 238
3a01204 TIGR00955
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ...
27-218 1.04e-15

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273361 [Multi-domain]  Cd Length: 617  Bit Score: 75.85  E-value: 1.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  27 GESLCVIGQSGTGKSVLLKCILGLEAPE---AGRILWQGRPLDrAARARFLAGFGMlfQGAALFDSLSVWQNVAF----R 99
Cdd:TIGR00955  51 GELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPID-AKEMRAISAYVQ--QDDLFIPTLTVREHLMFqahlR 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 100 LRQRMSDDRARGIALDKLARVGLGP------ETADLMPAeLSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAID 173
Cdd:TIGR00955 128 MPRRVTKKEKRERVDEVLQALGLRKcantriGVPGRVKG-LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV 206
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1608348115 174 ALIRGIVTEtGATALTITHDMAS-VARIGDRVALLQGGRIVHDGPV 218
Cdd:TIGR00955 207 QVLKGLAQK-GKTIICTIHQPSSeLFELFDKIILMAEGRVAYLGSP 251
PRK11160 PRK11160
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
16-216 2.45e-15

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236865 [Multi-domain]  Cd Length: 574  Bit Score: 74.86  E-value: 2.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLSVWQN 95
Cdd:PRK11160  355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SATLRDN 433
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQrMSDDRARGIaldkLARVGL-----GPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:PRK11160  434 LLLAAPN-ASDEALIEV----LQQVGLeklleDDKGLNAWLGEggrqLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 167 IRARAIDALIRGIVteTGATALTITHDMASVARIgDRVALLQGGRIVHDG 216
Cdd:PRK11160  509 ETERQILELLAEHA--QNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQG 555
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
2-219 5.35e-15

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 74.01  E-value: 5.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARFLAGFGML 80
Cdd:NF033858    2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMaDARHRRAVCPRIAYM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAA--LFDSLSVWQNVAF--RLRQRMSDDRARGIAlDKLARVGLGPeTADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF033858   82 PQGLGknLYPTLSVFENLDFfgRLFGQDAAERRRRID-ELLRATGLAP-FADRPAGKLSGGMKQKLGLCCALIHDPDLLI 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 157 FDEPTTGLDPIRARAIDALIRGIVTET-GATALTITHDMASVARIgDRVALLQGGRIVHDGPVA 219
Cdd:NF033858  160 LDEPTTGVDPLSRRQFWELIDRIRAERpGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPA 222
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
17-215 6.76e-15

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 73.32  E-value: 6.76e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL-EAPEAGRILWQGRPLD-RAARARFLAGFGMLFQGA---ALFDSLS 91
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVDiRNPAQAIRAGIAMVPEDRkrhGIVPILG 355
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNV------AFRLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:TIGR02633 356 VGKNItlsvlkSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1608348115 166 PIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHD 215
Cdd:TIGR02633 436 VGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
PRK13543 PRK13543
heme ABC exporter ATP-binding protein CcmA;
6-209 7.36e-15

heme ABC exporter ATP-binding protein CcmA;


Pssm-ID: 184129 [Multi-domain]  Cd Length: 214  Bit Score: 71.03  E-value: 7.36e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   6 GLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLfqgAA 85
Cdd:PRK13543   16 ALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL---PG 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 LFDSLSVWQNVAFrlRQRMSDDRARGIALDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:PRK13543   93 LKADLSTLENLHF--LCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 166 P----IRARAIDALIRgivteTGATALTITHDMASVARIGDRVALLQG 209
Cdd:PRK13543  170 LegitLVNRMISAHLR-----GGGAALVTTHGAYAAPPVRTRMLTLEA 212
hmuV PRK13547
heme ABC transporter ATP-binding protein;
13-221 1.36e-14

heme ABC transporter ATP-binding protein;


Pssm-ID: 184132 [Multi-domain]  Cd Length: 272  Bit Score: 71.01  E-value: 1.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  13 ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILG-LEAPEA-------GRILWQGRPLDRAARARFLAGFGMLFQGA 84
Cdd:PRK13547   13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdLTGGGAprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 ALFDSLSVWQNVAF-----RLRQRMSDDRARGIALDKLARVGLGPETADLMpAELSGGMAKRAGLARAIAD--------- 150
Cdd:PRK13547   93 QPAFAFSAREIVLLgryphARRAGALTHRDGEIAWQALALAGATALVGRDV-TTLSGGELARVQFARVLAQlwpphdaaq 171
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGM 221
Cdd:PRK13547  172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
2-232 2.30e-14

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 72.08  E-value: 2.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---DRAARARFlagfG 78
Cdd:NF033858  267 IEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVdagDIATRRRV----G 342
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 MLFQGAALFDSLSVWQNVAF--RLRQRMSDDRARGIAlDKLARVGLGpETADLMPAELSGGMAKRAGLARAIADDPQIIF 156
Cdd:NF033858  343 YMSQAFSLYGELTVRQNLELhaRLFHLPAAEIAARVA-EMLERFDLA-DVADALPDSLPLGIRQRLSLAVAVIHKPELLI 420
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 157 FDEPTTGLDPIrARaiDALIRGIVT---ETGATALTITHDMASVARIgDRVALLQGGRI-VHDGPVAGMDA--APAL-AA 229
Cdd:NF033858  421 LDEPTSGVDPV-AR--DMFWRLLIElsrEDGVTIFISTHFMNEAERC-DRISLMHAGRVlASDTPAALVAArgAATLeEA 496

                  ...
gi 1608348115 230 FLG 232
Cdd:NF033858  497 FIA 499
PRK11147 PRK11147
ABC transporter ATPase component; Reviewed
1-213 2.77e-14

ABC transporter ATPase component; Reviewed


Pssm-ID: 236861 [Multi-domain]  Cd Length: 635  Bit Score: 71.52  E-value: 2.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKcILGLEAP-EAGRI----------LWQGRPldraa 69
Cdd:PRK11147    3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMK-ILNGEVLlDDGRIiyeqdlivarLQQDPP----- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  70 raRFLAG--FGMLFQG-AALFDSLSVWQNVAFRLRQRMSD-------------DRARGIALDK-----LARVGLGPETad 128
Cdd:PRK11147   77 --RNVEGtvYDFVAEGiEEQAEYLKRYHDISHLVETDPSEknlnelaklqeqlDHHNLWQLENrinevLAQLGLDPDA-- 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 129 lMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpiraraIDAL--IRGIVTETGATALTITHDMASVARIGDRVAL 206
Cdd:PRK11147  153 -ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD------IETIewLEGFLKTFQGSIIFISHDRSFIRNMATRIVD 225

                  ....*..
gi 1608348115 207 LQGGRIV 213
Cdd:PRK11147  226 LDRGKLV 232
livF PRK11614
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
1-232 2.90e-14

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;


Pssm-ID: 183231 [Multi-domain]  Cd Length: 237  Bit Score: 69.91  E-value: 2.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFL-AGFGM 79
Cdd:PRK11614    5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMrEAVAI 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSLSVWQNVA----FRLRQRMSddrargialDKLARV-GLGP---ETADLMPAELSGGMAKRAGLARAIADD 151
Cdd:PRK11614   85 VPEGRRVFSRMTVEENLAmggfFAERDQFQ---------ERIKWVyELFPrlhERRIQRAGTMSGGEQQMLAIGRALMSQ 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPAL-AAF 230
Cdd:PRK11614  156 PRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVrSAY 234

                  ..
gi 1608348115 231 LG 232
Cdd:PRK11614  235 LG 236
ycf16 CHL00131
sulfate ABC transporter protein; Validated
1-216 2.25e-13

sulfate ABC transporter protein; Validated


Pssm-ID: 214372 [Multi-domain]  Cd Length: 252  Bit Score: 67.36  E-value: 2.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPE--AGRILWQGR------PLDRAARAR 72
Cdd:CHL00131    7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKilEGDILFKGEsildlePEERAHLGI 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  73 FLAgfgmlFQ------GAALFDSLsvwqNVAFRLRQRMSDDRAR------GIALDKLARVGLGPETADLMPAE-LSGGMA 139
Cdd:CHL00131   87 FLA-----FQypieipGVSNADFL----RLAYNSKRKFQGLPELdpleflEIINEKLKLVGMDPSFLSRNVNEgFSGGEK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 140 KRAGLARAIADDPQIIFFDEPTTGLDpiraraIDAL------IRGIVTETGATALtITHDMASVARIG-DRVALLQGGRI 212
Cdd:CHL00131  158 KRNEILQMALLDSELAILDETDSGLD------IDALkiiaegINKLMTSENSIIL-ITHYQRLLDYIKpDYVHVMQNGKI 230

                  ....
gi 1608348115 213 VHDG 216
Cdd:CHL00131  231 IKTG 234
PRK11174 PRK11174
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
14-229 3.91e-13

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236870 [Multi-domain]  Cd Length: 588  Bit Score: 68.33  E-value: 3.91e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLeAPEAGRILWQG---RPLDRAARARFLAGFG---MLFQGaalf 87
Cdd:PRK11174  363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGielRELDPESWRKHLSWVGqnpQLPHG---- 437
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  88 dslSVWQNVAFRlRQRMSDDR-----ARGIALDKLARVGLGPETA--DLMpAELSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:PRK11174  438 ---TLRDNVLLG-NPDASDEQlqqalENAWVSEFLPLLPQGLDTPigDQA-AGLSVGQAQRLALARALLQPCQLLLLDEP 512
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 161 TTGLDPIRARAI-DALIRGIvteTGATALTITHDMASVARIgDRVALLQGGRIVHDGPVAGMDAAPALAA 229
Cdd:PRK11174  513 TASLDAHSEQLVmQALNAAS---RRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGGLFA 578
ABCC_NFT1 cd03369
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ...
2-217 4.54e-13

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213269 [Multi-domain]  Cd Length: 207  Bit Score: 65.90  E-value: 4.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGA--TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGM 79
Cdd:cd03369     7 IEVENLSVRYAPdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 LFQGAALFDSlSVWQNVafRLRQRMSDDRARGiALdklaRVGLGPETadlmpaeLSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:cd03369    87 IPQDPTLFSG-TIRSNL--DPFDEYSDEEIYG-AL----RVSEGGLN-------LSQGQRQLLCLARALLKRPRVLVLDE 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608348115 160 PTTGLDpiraRAIDALIRGIVTE--TGATALTITHDMASVARIgDRVALLQGGRIV-HDGP 217
Cdd:cd03369   152 ATASID----YATDALIQKTIREefTNSTILTIAHRLRTIIDY-DKILVMDAGEVKeYDHP 207
ATM1 COG5265
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ...
16-213 1.15e-12

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444078 [Multi-domain]  Cd Length: 605  Bit Score: 66.77  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:COG5265   373 ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQDTVLFND-TIAYN 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFrlrQRMSDDRARGIALDKLARV-----GLgPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP 166
Cdd:COG5265   452 IAY---GRPDASEEEVEAAARAAQIhdfieSL-PDGYDTRVGErglkLSGGEKQRVAIARTLLKNPPILIFDEATSALDS 527
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 167 IRARAI-DALIRgiVTEtGATALTITHDMASVARiGDRVALLQGGRIV 213
Cdd:COG5265   528 RTERAIqAALRE--VAR-GRTTLVIAHRLSTIVD-ADEILVLEAGRIV 571
3a01208 TIGR00958
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
16-216 1.30e-12

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273363 [Multi-domain]  Cd Length: 711  Bit Score: 66.67  E-value: 1.30e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFdSLSVWQN 95
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SGSVREN 574
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRqRMSDDRARGIALDKLAR--VGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPira 169
Cdd:TIGR00958 575 IAYGLT-DTPDEEIMAAAKAANAHdfIMEFPNGYDTEVGEkgsqLSGGQKQRIAIARALVRKPRVLILDEATSALDA--- 650
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1608348115 170 rAIDALIRGIVTETGATALTITHDMaSVARIGDRVALLQGGRIVHDG 216
Cdd:TIGR00958 651 -ECEQLLQESRSRASRTVLLIAHRL-STVERADQILVLKKGSVVEMG 695
PRK15064 PRK15064
ABC transporter ATP-binding protein; Provisional
2-214 3.78e-12

ABC transporter ATP-binding protein; Provisional


Pssm-ID: 237894 [Multi-domain]  Cd Length: 530  Bit Score: 65.30  E-value: 3.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRpldraararflAGFGMLF 81
Cdd:PRK15064  320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYA 388
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAA--------LFDSLSVWqnvafrlRQRMSDDRA-RGIaldkLARVGLGPETADLMPAELSGGMAKRAGLARAIADDP 152
Cdd:PRK15064  389 QDHAydfendltLFDWMSQW-------RQEGDDEQAvRGT----LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 153 QIIFFDEPTTGLDpirARAIDALIRGIVTETGaTALTITHDMASVARIGDRVALLQGGRIVH 214
Cdd:PRK15064  458 NVLVMDEPTNHMD---MESIESLNMALEKYEG-TLIFVSHDREFVSSLATRIIEITPDGVVD 515
PRK13657 PRK13657
glucan ABC transporter ATP-binding protein/ permease;
12-216 4.92e-12

glucan ABC transporter ATP-binding protein/ permease;


Pssm-ID: 184214 [Multi-domain]  Cd Length: 588  Bit Score: 64.98  E-value: 4.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  12 GATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALF---- 87
Cdd:PRK13657  346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFnrsi 425
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  88 -DSLSVWQNVAFRLRQRMSDDRARgiALDKLARVGLGPETadlMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:PRK13657  426 eDNIRVGRPDATDEEMRAAAERAQ--AHDFIERKPDGYDT---VVGErgrqLSGGERQRLAIARALLKDPPILILDEATS 500
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 163 GLDPIRAR----AIDALIRgivtetGATALTITHDMASVaRIGDRVALLQGGRIVHDG 216
Cdd:PRK13657  501 ALDVETEAkvkaALDELMK------GRTTFIIAHRLSTV-RNADRILVFDNGRVVESG 551
ABCC_MRP_domain1 cd03250
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ...
16-211 4.93e-12

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213217 [Multi-domain]  Cd Length: 204  Bit Score: 62.87  E-value: 4.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRpldraararflagFGMLFQGAALFdSLSVWQN 95
Cdd:cd03250    20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQEPWIQ-NGTIREN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAF--RLRQRMSDDRARGIALDK-LARVGLGPETadlMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR 168
Cdd:cd03250    86 ILFgkPFDEERYEKVIKACALEPdLEILPDGDLT---EIGEkginLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348115 169 ARAI-DALIRGIVTEtGATALTITHDMaSVARIGDRVALLQGGR 211
Cdd:cd03250   163 GRHIfENCILGLLLN-NKTRILVTHQL-QLLPHADQIVVLDNGR 204
ABCG_PDR_domain1 cd03233
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ...
4-216 5.53e-12

First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213200 [Multi-domain]  Cd Length: 202  Bit Score: 62.67  E-value: 5.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL----EAPEaGRILWQGRPLDRAARArflagfgm 79
Cdd:cd03233    10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegnVSVE-GDIHYNGIPYKEFAEK-------- 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  80 lFQGAALFDS--------LSVWQNVAFRLRQRmSDDRARGIaldklarvglgpetadlmpaelSGGMAKRAGLARAIADD 151
Cdd:cd03233    81 -YPGEIIYVSeedvhfptLTVRETLDFALRCK-GNEFVRGI----------------------SGGERKRVSIAEALVSR 136
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATAL--------TITHdmasvarIGDRVALLQGGRIVHDG 216
Cdd:cd03233   137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFvslyqasdEIYD-------LFDKVLVLYEGRQIYYG 202
PRK03695 PRK03695
vitamin B12-transporter ATPase; Provisional
23-217 5.56e-12

vitamin B12-transporter ATPase; Provisional


Pssm-ID: 235150 [Multi-domain]  Cd Length: 248  Bit Score: 63.41  E-value: 5.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  23 TVGQGESLCVIGQSGTGKSVLLKCILGLeAPEAGRILWQGRPLDRA-----ARAR-FLAGfgmlfQGAALFdSLSVWQNV 96
Cdd:PRK03695   18 EVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWsaaelARHRaYLSQ-----QQTPPF-AMPVFQYL 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  97 AFRLRQRMSDDRARGiALDKLA-RVGLGpetaDLMP---AELSGGMAKRAGLA-------RAIADDPQIIFFDEPTTGLD 165
Cdd:PRK03695   91 TLHQPDKTRTEAVAS-ALNEVAeALGLD----DKLGrsvNQLSGGEWQRVRLAavvlqvwPDINPAGQLLLLDEPMNSLD 165
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 166 PIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:PRK03695  166 VAQQAALDRLLSEL-CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
GguA NF040905
sugar ABC transporter ATP-binding protein;
1-218 5.58e-12

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 64.81  E-value: 5.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEaPEA---GRILWQGRPLD----RAARARf 73
Cdd:NF040905    1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHGsyeGEILFDGEVCRfkdiRDSEAL- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  74 laGFGMLFQGAALFDSLSVWQNVaFrlrqrMSDDRAR-GI---------ALDKLARVGLGpETADLMPAELSGGMAKRAG 143
Cdd:NF040905   79 --GIVIIHQELALIPYLSIAENI-F-----LGNERAKrGVidwnetnrrARELLAKVGLD-ESPDTLVTDIGVGKQQLVE 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 144 LARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIV-----HDGPV 218
Cdd:NF040905  150 IAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIetldcRADEV 228
PLN03211 PLN03211
ABC transporter G-25; Provisional
16-236 6.19e-12

ABC transporter G-25; Provisional


Pssm-ID: 215634 [Multi-domain]  Cd Length: 659  Bit Score: 64.90  E-value: 6.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILG-LEAPE-AGRILWQGRPLDRAARARFlagfGMLFQGAALFDSLSVW 93
Cdd:PLN03211   83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNfTGTILANNRKPTKQILKRT----GFVTQDDILYPHLTVR 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  94 QNVAF----RLRQRMSDDRARGIALDKLARVGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:PLN03211  159 ETLVFcsllRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 166 PIRA-RAIDALirGIVTETGATALTITHDMAS-VARIGDRVALLQGGRIVHDGpvAGMDAApALAAFLGRSPA 236
Cdd:PLN03211  239 ATAAyRLVLTL--GSLAQKGKTIVTSMHQPSSrVYQMFDSVLVLSEGRCLFFG--KGSDAM-AYFESVGFSPS 306
ABCC_MRP_domain2 cd03244
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ...
16-213 6.54e-12

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213211 [Multi-domain]  Cd Length: 221  Bit Score: 62.90  E-value: 6.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVWQN 95
Cdd:cd03244    19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG-TIRSN 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRlrQRMSDDRARGIaldkLARVGLG------PETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:cd03244    98 LDPF--GEYSDEELWQA----LERVGLKefveslPGGLDTVVEEggenLSVGQRQLLCLARALLRKSKILVLDEATASVD 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1608348115 166 PIRARAIDALIRgivTE-TGATALTITHDMASVARIgDRVALLQGGRIV 213
Cdd:cd03244   172 PETDALIQKTIR---EAfKDCTVLTIAHRLDTIIDS-DRILVLDKGRVV 216
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
15-232 7.00e-12

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 64.57  E-value: 7.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGL-EAPEAGRILWQGRPLD-RAARARFLAGFGML-----FQGaaLF 87
Cdd:PRK13549  276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVKiRNPQQAIAQGIAMVpedrkRDG--IV 353
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  88 DSLSVWQNVA------FRLRQRMSDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:PRK13549  354 PVMGVGKNITlaaldrFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 162 TGLDpIRARA-IDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLG 232
Cdd:PRK13549  434 RGID-VGAKYeIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQVMEAALR 503
PRK10522 PRK10522
multidrug transporter membrane component/ATP-binding component; Provisional
2-212 1.76e-11

multidrug transporter membrane component/ATP-binding component; Provisional


Pssm-ID: 236707 [Multi-domain]  Cd Length: 547  Bit Score: 63.45  E-value: 1.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDG-VDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:PRK10522  323 LELRNVTFAYQDNGFSVGpINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAfrlrqrmSDDRARGIALDKLA-RVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDE 159
Cdd:PRK10522  403 FTDFHLFDQLLGPEGKP-------ANPALVEKWLERLKmAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348115 160 PTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVARiGDRVALLQGGRI 212
Cdd:PRK10522  476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQL 527
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
20-212 2.51e-11

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 62.88  E-value: 2.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  20 VDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR------PLDRAARarflagfGMLF-----QGAALFD 88
Cdd:PRK09700  282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKdisprsPLDAVKK-------GMAYitesrRDNGFFP 354
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  89 SLSVWQNVAF-------RLRQRM---SDDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK09700  355 NFSIAQNMAIsrslkdgGYKGAMglfHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 159 EPTTGLDpIRARA-IDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRI 212
Cdd:PRK09700  435 EPTRGID-VGAKAeIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
20-239 2.82e-11

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 62.76  E-value: 2.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  20 VDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL-DRAARARFLAGFGML---FQGAALFDSLSVWQN 95
Cdd:PRK15439  282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEInALSTAQRLARGLVYLpedRQSSGLYLDAPLAWN 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  96 VAFRLRQRMS--DDRARGIA-LDKLAR-VGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpIRARA 171
Cdd:PRK15439  362 VCALTHNRRGfwIKPARENAvLERYRRaLNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD-VSARN 440
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115 172 -IDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFLGRSPAQSA 239
Cdd:PRK15439  441 dIYQLIRSI-AAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQAQEA 508
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
2-193 1.44e-10

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 60.72  E-value: 1.44e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILW----------QGRpldraara 71
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIgetvklayvdQSR-------- 394
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  72 rflagfgmlfqgAALFDSLSVWQNVA-----FRLRQRMSDDRA-------RGIalDKLARVGlgpetadlmpaELSGGMA 139
Cdd:TIGR03719 395 ------------DALDPNKTVWEEISggldiIKLGKREIPSRAyvgrfnfKGS--DQQKKVG-----------QLSGGER 449
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 140 KRAGLARAIADDPQIIFFDEPTTGLDPIRARAI-DALirgivTETGATALTITHD 193
Cdd:TIGR03719 450 NRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALeEAL-----LNFAGCAVVISHD 499
PRK10938 PRK10938
putative molybdenum transport ATP-binding protein ModF; Provisional
2-177 1.49e-10

putative molybdenum transport ATP-binding protein ModF; Provisional


Pssm-ID: 182852 [Multi-domain]  Cd Length: 490  Bit Score: 60.41  E-value: 1.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGlEAPEA--------------GRILWQGRP--- 64
Cdd:PRK10938  261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGysndltlfgrrrgsGETIWDIKKhig 339
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  65 -------LD----RAARARFLAGFgmlfqgaalFDSLSVWQNVAfrlrqrmsdDRARGIALDKLARVGLGPETADLMPAE 133
Cdd:PRK10938  340 yvssslhLDyrvsTSVRNVILSGF---------FDSIGIYQAVS---------DRQQKLAQQWLDILGIDKRTADAPFHS 401
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIR----ARAIDALIR 177
Cdd:PRK10938  402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNrqlvRRFVDVLIS 449
YddA COG4178
ABC-type uncharacterized transport system, permease and ATPase components [General function ...
14-210 2.13e-10

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];


Pssm-ID: 443337 [Multi-domain]  Cd Length: 571  Bit Score: 60.21  E-value: 2.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILwqgRPldraararflAGFGMLF--------QGaa 85
Cdd:COG4178   376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA---RP----------AGARVLFlpqrpylpLG-- 440
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 lfdslsvwqnvafRLRQ---------RMSDDRARGIaldkLARVGLGP------ETADLmPAELSGGMAKRAGLARAIAD 150
Cdd:COG4178   441 -------------TLREallypataeAFSDAELREA----LEAVGLGHlaerldEEADW-DQVLSLGEQQRLAFARLLLH 502
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 151 DPQIIFFDEPTTGLDPIRARAIDALIRGivTETGATALTITHDmASVARIGDRVALLQGG 210
Cdd:COG4178   503 KPDWLFLDEATSALDEENEAALYQLLRE--ELPGTTVISVGHR-STLAAFHDRVLELTGD 559
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
2-239 1.43e-09

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 57.61  E-value: 1.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQktfgATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLD-RAARARFLAGFgML 80
Cdd:PRK11288  258 LRLDGLK----GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAIRAGI-ML 332
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 ------FQGaaLFDSLSVWQNVAFRLRQRMS-------DDRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARA 147
Cdd:PRK11288  333 cpedrkAEG--IIPVHSVADNINISARRHHLragclinNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRW 410
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDpIRARA-IDALIRGIvTETGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPA 226
Cdd:PRK11288  411 LSEDMKVILLDEPTRGID-VGAKHeIYNVIYEL-AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488
                         250
                  ....*....|...
gi 1608348115 227 LAAFLGRSPAQSA 239
Cdd:PRK11288  489 LSLALPRTSAAVA 501
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
77-199 2.94e-09

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 56.96  E-value: 2.94e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   77 FGMLFQGAALFDsLSVWQNVAFRLRQRMSDDRARG---IALDKLARVGLGPETADLMP--AELSGGMAKRAGLARAIADD 151
Cdd:PTZ00265  1298 FSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRAckfAAIDEFIESLPNKYDTNVGPygKSLSGGQKQRIAIARALLRE 1376
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1608348115  152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASVAR 199
Cdd:PTZ00265  1377 PKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR 1424
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
1-210 1.05e-08

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 55.40  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115    1 MIEIRGLQKTFGATR--VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLdRAARARFLAGFG 78
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI-LTNISDVHQNMG 2015
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   79 MLFQGAALFDSLSVWQNVAFRLRqrmsddrARGIALDKLARV------GLGPET-ADLMPAELSGGMAKRAGLARAIADD 151
Cdd:TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYAR-------LRGVPAEEIEKVanwsiqSLGLSLyADRLAGTYSGGNKRKLSTAIALIGC 2088
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348115  152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTiTHDMASVARIGDRVALLQGG 210
Cdd:TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSMEECEALCTRLAIMVKG 2146
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
15-218 1.10e-08

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 55.11  E-value: 1.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAP---EAGRILWQGRPLDraarARFLAGFGMLFQGAALFDSLS 91
Cdd:TIGR00956  777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTST 852
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   92 VWQNVAF--RLRQRMS-DDRARGIALDKLARVgLGPET-ADLM---PAE-LSGGMAKRAGLARAIADDPQ-IIFFDEPTT 162
Cdd:TIGR00956  853 VRESLRFsaYLRQPKSvSKSEKMEYVEEVIKL-LEMESyADAVvgvPGEgLNVEQRKRLTIGVELVAKPKlLLFLDEPTS 931
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115  163 GLDPIRARAIDALIRGIVtETGATAL-TITHDMASVARIGDRVALLQ-GGRIVHDGPV 218
Cdd:TIGR00956  932 GLDSQTAWSICKLMRKLA-DHGQAILcTIHQPSAILFEEFDRLLLLQkGGQTVYFGDL 988
ABCG_PDR_domain2 cd03232
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ...
15-216 1.19e-08

Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213199 [Multi-domain]  Cd Length: 192  Bit Score: 53.40  E-value: 1.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  15 RVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCIlgleapeAGR---------ILWQGRPLDRAararFLAGFGMLFQGAA 85
Cdd:cd03232    21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVL-------AGRktagvitgeILINGRPLDKN----FQRSTGYVEQQDV 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 LFDSLSVwqNVAFRLRQRMsddraRGIALDKLARVGLGPEtadlmpaelsggmakraglaraIADDPQIIFFDEPTTGLD 165
Cdd:cd03232    90 HSPNLTV--REALRFSALL-----RGLSVEQRKRLTIGVE----------------------LAAKPSILFLDEPTSGLD 140
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 166 PIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQ-GGRIVHDG 216
Cdd:cd03232   141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKrGGKTVYFG 192
MRP_assoc_pro TIGR00957
multi drug resistance-associated protein (MRP); This model describes multi drug ...
17-231 1.35e-08

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]


Pssm-ID: 188098 [Multi-domain]  Cd Length: 1522  Bit Score: 54.95  E-value: 1.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGleapeagrilwqgrPLDRAARARFLAGFGMLFQGAALFDSLSVWQNV 96
Cdd:TIGR00957  654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--------------EMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENI 719
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   97 AF--RLRQRMSDDRARGIALdkLARVGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRAR 170
Cdd:TIGR00957  720 LFgkALNEKYYQQVLEACAL--LPDLEILPSGDRTEIGEkgvnLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608348115  171 AI-DALIRGIVTETGATALTITHDMASVARIgDRVALLQGGRIVHDGPV-AGMDAAPALAAFL 231
Cdd:TIGR00957  798 HIfEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYqELLQRDGAFAEFL 859
ABC_RNaseL_inhibitor_domain2 cd03237
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
23-209 1.57e-08

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213204 [Multi-domain]  Cd Length: 246  Bit Score: 53.57  E-value: 1.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  23 TVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL---------DRAARARFLagfgmLFQGAALFDSLSVW 93
Cdd:cd03237    21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVsykpqyikaDYEGTVRDL-----LSSITKDFYTHPYF 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  94 QNvafrlrqrmsdDRARGIALDKLArvglgpetaDLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAID 173
Cdd:cd03237    96 KT-----------EIAKPLQIEQIL---------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1608348115 174 ALIRGIVTETGATALTITHDMASVARIGDRVALLQG 209
Cdd:cd03237   156 KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEG 191
PTZ00243 PTZ00243
ABC transporter; Provisional
16-244 2.37e-08

ABC transporter; Provisional


Pssm-ID: 240327 [Multi-domain]  Cd Length: 1560  Bit Score: 54.40  E-value: 2.37e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILwqgrpldrAARArflagFGMLFQGAALFDSlSVWQN 95
Cdd:PTZ00243   675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW--------AERS-----IAYVPQQAWIMNA-TVRGN 740
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   96 VAFRLRQRMSD--DRARGIALD-KLARVGLGPETA-DLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDP-IRAR 170
Cdd:PTZ00243   741 ILFFDEEDAARlaDAVRVSQLEaDLAQLGGGLETEiGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAhVGER 820
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  171 AIDALIRGIVteTGATALTITHDMASVARiGDRVALLQGGRIVHDGP-------------------------------VA 219
Cdd:PTZ00243   821 VVEECFLGAL--AGKTRVLATHQVHVVPR-ADYVVALGDGRVEFSGSsadfmrtslyatlaaelkenkdskegdadaeVA 897
                          250       260
                   ....*....|....*....|....*
gi 1608348115  220 GMDAAPALAAFLGRSPAQSAGFAAP 244
Cdd:PTZ00243   898 EVDAAPGGAVDHEPPVAKQEGNAEG 922
CFTR_protein TIGR01271
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...
14-210 4.06e-08

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]


Pssm-ID: 273530 [Multi-domain]  Cd Length: 1490  Bit Score: 53.38  E-value: 4.06e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGrpldraaRARFLAGFGMLFQGaalfdslSVW 93
Cdd:TIGR01271  439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPG-------TIK 504
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   94 QNVAFRLrqrmSDDRARGIALDKLAR----VGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:TIGR01271  505 DNIIFGL----SYDEYRYTSVIKACQleedIALFPEKDKTVLGEggitLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1608348115  166 PIRARAI--DALIRGIVTEtgaTALTITHDMASVARiGDRVALLQGG 210
Cdd:TIGR01271  581 VVTEKEIfeSCLCKLMSNK---TRILVTSKLEHLKK-ADKILLLHEG 623
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
1-216 4.75e-08

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 52.89  E-value: 4.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGatrvldGVDLTV--GQ---GESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGR----P----LDR 67
Cdd:PRK13409  340 LVEYPDLTKKLG------DFSLEVegGEiyeGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKisykPqyikPDY 413
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  68 AARARFLagfgmLFQGAALFDSLSVWQNVAFRLRqrmsddrargiaLDKLArvglgpetaDLMPAELSGGMAKRAGLARA 147
Cdd:PRK13409  414 DGTVEDL-----LRSITDDLGSSYYKSEIIKPLQ------------LERLL---------DKNVKDLSGGELQRVAIAAC 467
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 148 IADDPQIIFFDEPTTGLDpIRARAIDA-LIRGIVTETGATALTITHDMASVARIGDRVallqggrIVHDG 216
Cdd:PRK13409  468 LSRDADLYLLDEPSAHLD-VEQRLAVAkAIRRIAEEREATALVVDHDIYMIDYISDRL-------MVFEG 529
ABC_RNaseL_inhibitor cd03222
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ...
7-209 5.12e-08

ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213189 [Multi-domain]  Cd Length: 177  Bit Score: 51.42  E-value: 5.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   7 LQKTFGATRVLdgVDL-TVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGrpldraararflagfgmlfqgaa 85
Cdd:cd03222     6 CVKRYGVFFLL--VELgVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG----------------------- 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  86 lfdslsvwqnvafrlrqrmsddrargialdklARVGLGPETADLmpaelSGGMAKRAGLARAIADDPQIIFFDEPTTGLD 165
Cdd:cd03222    61 --------------------------------ITPVYKPQYIDL-----SGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348115 166 PIRARAIDALIRGIVTETGATALTITHDMASVARIGDRVALLQG 209
Cdd:cd03222   104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147
ABCD_peroxisomal_ALDP cd03223
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...
14-192 5.34e-08

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).


Pssm-ID: 213190 [Multi-domain]  Cd Length: 166  Bit Score: 51.00  E-value: 5.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRIlwqGRPLDRaararflagfGMLFqgaalfdslsvw 93
Cdd:cd03223    14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI---GMPEGE----------DLLF------------ 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  94 qnvafrLRQR--MSDDRARGIALDKLARVglgpetadlmpaeLSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPirarA 171
Cdd:cd03223    69 ------LPQRpyLPLGTLREQLIYPWDDV-------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE----E 125
                         170       180
                  ....*....|....*....|.
gi 1608348115 172 IDALIRGIVTETGATALTITH 192
Cdd:cd03223   126 SEDRLYQLLKELGITVISVGH 146
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
4-193 5.41e-08

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 53.02  E-value: 5.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   4 IRGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRilwqgrpldraarARFLAGF--GML 80
Cdd:TIGR03719   7 MNRVSKVVPPKKeILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGE-------------ARPQPGIkvGYL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFDSLSVWQNVAFRLR-------------QRMSDDRARGIAL--------DKLARVG----------------LG 123
Cdd:TIGR03719  74 PQEPQLDPTKTVRENVEEGVAeikdaldrfneisAKYAEPDADFDKLaaeqaelqEIIDAADawdldsqleiamdalrCP 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 124 PETADLmpAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpirARAIDALIRGIVTETGaTALTITHD 193
Cdd:TIGR03719 154 PWDADV--TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLERHLQEYPG-TVVAVTHD 217
PRK10790 PRK10790
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
2-216 5.46e-08

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;


Pssm-ID: 182733 [Multi-domain]  Cd Length: 592  Bit Score: 52.80  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGML 80
Cdd:PRK10790  341 IDIDNVSFAYRDDNlVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  81 FQGAALFdSLSVWQNVAfrLRQRMSDDRA----RGIALDKLARvGLgPETADLMPAE----LSGGMAKRAGLARAIADDP 152
Cdd:PRK10790  421 QQDPVVL-ADTFLANVT--LGRDISEEQVwqalETVQLAELAR-SL-PDGLYTPLGEqgnnLSVGQKQLLALARVLVQTP 495
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 153 QIIFFDEPTTGLDPIRARAIDALIRGIVTETgaTALTITHDMASVARiGDRVALLQGGRIVHDG 216
Cdd:PRK10790  496 QILILDEATANIDSGTEQAIQQALAAVREHT--TLVVIAHRLSTIVE-ADTILVLHRGQAVEQG 556
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
17-239 5.50e-08

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 52.70  E-value: 5.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGfGMLF-----QGAALFDSLS 91
Cdd:PRK10762  268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN-GIVYisedrKRDGLVLGMS 346
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  92 VWQNvafrlrqrMSDdrargIALDKLARVGLGPETADLMPA--------------------ELSGGMAKRAGLARAIADD 151
Cdd:PRK10762  347 VKEN--------MSL-----TALRYFSRAGGSLKHADEQQAvsdfirlfniktpsmeqaigLLSGGNQQKVAIARGLMTR 413
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 152 PQIIFFDEPTTGLDPIRARAIDALIRGIVTEtGATALTITHDMASVARIGDRVALLQGGRIVHDGPVAGMDAAPALAAFL 231
Cdd:PRK10762  414 PKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLMAAAV 492

                  ....*...
gi 1608348115 232 GRSPAQSA 239
Cdd:PRK10762  493 GKLNRVNQ 500
PRK11176 PRK11176
lipid A ABC transporter ATP-binding protein/permease MsbA;
14-216 7.04e-08

lipid A ABC transporter ATP-binding protein/permease MsbA;


Pssm-ID: 183016 [Multi-domain]  Cd Length: 582  Bit Score: 52.71  E-value: 7.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlSVW 93
Cdd:PRK11176  356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIA 434
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  94 QNVAFRLRQRMSDDRargiaLDKLARVGLGPETADLMP-----------AELSGGMAKRAGLARAIADDPQIIFFDEPTT 162
Cdd:PRK11176  435 NNIAYARTEQYSREQ-----IEEAARMAYAMDFINKMDngldtvigengVLLSGGQRQRIAIARALLRDSPILILDEATS 509
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 163 GLDPIRARAIDALIRGIvtETGATALTITHDMASVARiGDRVALLQGGRIVHDG 216
Cdd:PRK11176  510 ALDTESERAIQAALDEL--QKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERG 560
PLN03232 PLN03232
ABC transporter C family member; Provisional
16-217 7.25e-08

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 52.67  E-value: 7.25e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALF-------- 87
Cdd:PLN03232  1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFsgtvrfni 1330
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   88 DSLS------VWQNVAfrlRQRMSDDRARG-IALDklARVGLGPETadlmpaeLSGGMAKRAGLARAIADDPQIIFFDEP 160
Cdd:PLN03232  1331 DPFSehndadLWEALE---RAHIKDVIDRNpFGLD--AEVSEGGEN-------FSVGQRQLLSLARALLRRSKILVLDEA 1398
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  161 TTGLDpIRaraIDALIRGIVTE--TGATALTITHDMASVARIgDRVALLQGGRIV-HDGP 217
Cdd:PLN03232  1399 TASVD-VR---TDSLIQRTIREefKSCTMLVIAHRLNTIIDC-DKILVLSSGQVLeYDSP 1453
ABCC_SUR1_N cd03290
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ...
17-165 9.56e-08

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.


Pssm-ID: 213257 [Multi-domain]  Cd Length: 218  Bit Score: 51.18  E-value: 9.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRA------ARARFLAGFGMlfQGAALFDSl 90
Cdd:cd03290    17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPsfeatrSRNRYSVAYAA--QKPWLLNA- 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  91 SVWQNVAF-----RLRQRMSDDRArgialdklarvGLGPETaDLMP-----------AELSGGMAKRAGLARAIADDPQI 154
Cdd:cd03290    94 TVEENITFgspfnKQRYKAVTDAC-----------SLQPDI-DLLPfgdqteigergINLSGGQRQRICVARALYQNTNI 161
                         170
                  ....*....|.
gi 1608348115 155 IFFDEPTTGLD 165
Cdd:cd03290   162 VFLDDPFSALD 172
CFTR_protein TIGR01271
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...
10-167 9.89e-08

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]


Pssm-ID: 273530 [Multi-domain]  Cd Length: 1490  Bit Score: 52.22  E-value: 9.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   10 TFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEaGRILWQGRPLDRAARARFLAGFGMLFQGAALFDS 89
Cdd:TIGR01271 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG 1306
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   90 lsvwqnvAFRLR----QRMSDDRARGIAldklARVGLG------PETADLMPAE----LSGGMAKRAGLARAIADDPQII 155
Cdd:TIGR01271 1307 -------TFRKNldpyEQWSDEEIWKVA----EEVGLKsvieqfPDKLDFVLVDggyvLSNGHKQLMCLARSILSKAKIL 1375
                          170
                   ....*....|..
gi 1608348115  156 FFDEPTTGLDPI 167
Cdd:TIGR01271 1376 LLDEPSAHLDPV 1387
PRK13540 PRK13540
cytochrome c biogenesis protein CcmA; Provisional
1-195 9.90e-08

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 184127 [Multi-domain]  Cd Length: 200  Bit Score: 50.72  E-value: 9.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   1 MIEIRGLQKTFGATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPL--DRAARARFLAGFG 78
Cdd:PRK13540    1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIkkDLCTYQKQLCFVG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  79 mlfQGAALFDSLSVWQNVAFRLRQrmsddRARGIALDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PRK13540   81 ---HRSGINPYLTLRENCLYDIHF-----SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1608348115 159 EPTTGLDPIRARAIDALIRGIVTETGATALTITHDMA 195
Cdd:PRK13540  153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
8-217 1.90e-07

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 51.65  E-value: 1.90e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115    8 QKTFgatRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCIL----GLEAPEAGRILWQGRPLDRAARaRFLAGFGMLFQG 83
Cdd:TIGR00956   71 TKTF---DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGITPEEIKK-HYRGDVVYNAET 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   84 AALFDSLSVWQNVAFRLRQRMSDDRARGIALDKLAR---------VGL----GPETADLMPAELSGGMAKRAGLARAIAD 150
Cdd:TIGR00956  147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKhiadvymatYGLshtrNTKVGNDFVRGVSGGERKRVSIAEASLG 226
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115  151 DPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATAL-TITHDMASVARIGDRVALLQGGRIVHDGP 217
Cdd:TIGR00956  227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLvAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294
ABC_RNaseL_inhibitor_domain1 cd03236
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
133-209 3.31e-07

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213203 [Multi-domain]  Cd Length: 255  Bit Score: 49.67  E-value: 3.31e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348115 133 ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpIRARAIDA-LIRGIVTETGATaLTITHDMASVARIGDRVALLQG 209
Cdd:cd03236   139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD-IKQRLNAArLIRELAEDDNYV-LVVEHDLAVLDYLSDYIHCLYG 214
ABCC_CFTR1 cd03291
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ...
13-165 3.36e-07

ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.


Pssm-ID: 213258 [Multi-domain]  Cd Length: 282  Bit Score: 49.86  E-value: 3.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  13 ATRVLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGrpldraaRARFLAGFGMLFQGaalfdslSV 92
Cdd:cd03291    49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQFSWIMPG-------TI 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  93 WQNVAFRLrqrmSDDRARGIALDKLAR----VGLGPETADLMPAE----LSGGMAKRAGLARAIADDPQIIFFDEPTTGL 164
Cdd:cd03291   115 KENIIFGV----SYDEYRYKSVVKACQleedITKFPEKDNTVLGEggitLSGGQRARISLARAVYKDADLYLLDSPFGYL 190

                  .
gi 1608348115 165 D 165
Cdd:cd03291   191 D 191
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
2-193 2.76e-06

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 47.81  E-value: 2.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   2 IEIRGLQKTFGAtRVL-DGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILW----------QGRpldraar 70
Cdd:PRK11819  325 IEAENLSKSFGD-RLLiDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIgetvklayvdQSR------- 396
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  71 arflagfgmlfqgAALFDSLSVWQNVA-----FRLRQRMSDDRA-------RGIalDKLARVGlgpetadlmpaELSGGM 138
Cdd:PRK11819  397 -------------DALDPNKTVWEEISggldiIKVGNREIPSRAyvgrfnfKGG--DQQKKVG-----------VLSGGE 450
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115 139 AKRAGLARAIADDPQIIFFDEPTTGLDPIRARAI-DALIrgivtETGATALTITHD 193
Cdd:PRK11819  451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALeEALL-----EFPGCAVVISHD 501
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
14-204 2.87e-06

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 47.86  E-value: 2.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  14 TRVLDGVDLTVG-----QGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQgrpLDRAARARFL-AGFGML---FQGA 84
Cdd:COG1245   348 TKSYGGFSLEVEggeirEGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED---LKISYKPQYIsPDYDGTveeFLRS 424
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  85 ALFDSL--SVWQN-VAFRLRqrmsddrargiaLDKLArvglgpetaDLMPAELSGGMAKRAGLARAIADDPQIIFFDEPT 161
Cdd:COG1245   425 ANTDDFgsSYYKTeIIKPLG------------LEKLL---------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 483
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348115 162 TGLDpIRARAIDA-LIRGIVTETGATALTITHDMASVARIGDRV 204
Cdd:COG1245   484 AHLD-VEQRLAVAkAIRRFAENRGKTAMVVDHDIYLIDYISDRL 526
ABC_UvrA cd03238
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ...
17-216 5.73e-06

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213205 [Multi-domain]  Cd Length: 176  Bit Score: 45.39  E-value: 5.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCILgleAPEAGRILWQGRPLDRAARARFLagfgmlfqgaalfDSLsvwqnv 96
Cdd:cd03238    11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFI-------------DQL------ 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  97 afrlrQRMSDdrargialdklarVGLGPETADLMPAELSGGMAKRAGLARAIADDPQ--IIFFDEPTTGLDPIRARAIDA 174
Cdd:cd03238    69 -----QFLID-------------VGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLE 130
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1608348115 175 LIRGIVTEtGATALTITHDMAsVARIGDRV------ALLQGGRIVHDG 216
Cdd:cd03238   131 VIKGLIDL-GNTVILIEHNLD-VLSSADWIidfgpgSGKSGGKVVFSG 176
PLN03130 PLN03130
ABC transporter C family member; Provisional
16-217 6.52e-06

ABC transporter C family member; Provisional


Pssm-ID: 215595 [Multi-domain]  Cd Length: 1622  Bit Score: 47.04  E-value: 6.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   16 VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILWQGRPLDRAARARFLAGFGMLFQGAALFDSlsvwqN 95
Cdd:PLN03130  1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-----T 1328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   96 VAFRL----------------RQRMSDD-RARGIALDklARVGLGPETadlmpaeLSGGMAKRAGLARAIADDPQIIFFD 158
Cdd:PLN03130  1329 VRFNLdpfnehndadlwesleRAHLKDViRRNSLGLD--AEVSEAGEN-------FSVGQRQLLSLARALLRRSKILVLD 1399
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115  159 EPTTGLDpIRAraiDALIRGIVTE--TGATALTITHDMASVARIgDRVALLQGGRIV-HDGP 217
Cdd:PLN03130  1400 EATAAVD-VRT---DALIQKTIREefKSCTMLIIAHRLNTIIDC-DRILVLDAGRVVeFDTP 1456
ABC_Class2 cd03227
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ...
17-193 1.10e-05

ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.


Pssm-ID: 213194 [Multi-domain]  Cd Length: 162  Bit Score: 44.27  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  17 LDGVDLTVGQGESLCVIGQSGTGKSVLLKCI---LGLEAPEAGRILWQGRPLDRAARARFLAGFgmLFQgaalfdslsvw 93
Cdd:cd03227    11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIglaLGGAQSATRRRSGVKAGCIVAAVSAELIFT--RLQ----------- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  94 qnvafrlrqrmsddrargialdklarvglgpetadlmpaeLSGGMAKRAGLARAIA----DDPQIIFFDEPTTGLDPIRA 169
Cdd:cd03227    78 ----------------------------------------LSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPRDG 117
                         170       180
                  ....*....|....*....|....
gi 1608348115 170 RAIDALIRGIVTEtGATALTITHD 193
Cdd:cd03227   118 QALAEAILEHLVK-GAQVIVITHL 140
PLN03140 PLN03140
ABC transporter G family member; Provisional
134-218 1.26e-05

ABC transporter G family member; Provisional


Pssm-ID: 215599 [Multi-domain]  Cd Length: 1470  Bit Score: 45.99  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpirARAIDALIRGI--VTETGATAL-TITHDMASVARIGDRVALLQ-G 209
Cdd:PLN03140  1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD---ARAAAIVMRTVrnTVDTGRTVVcTIHQPSIDIFEAFDELLLMKrG 1096

                   ....*....
gi 1608348115  210 GRIVHDGPV 218
Cdd:PLN03140  1097 GQVIYSGPL 1105
PLN03073 PLN03073
ABC transporter F family; Provisional
19-193 1.90e-05

ABC transporter F family; Provisional


Pssm-ID: 215558 [Multi-domain]  Cd Length: 718  Bit Score: 45.24  E-value: 1.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  19 GVDLTvgqgESLCVIGQSGTGKSVLLKCILGLEAPEAGRILwqgrpldRAARARfLAGF------GMLFQGAALFDSLSV 92
Cdd:PLN03073  531 GIDLD----SRIAMVGPNGIGKSTILKLISGELQPSSGTVF-------RSAKVR-MAVFsqhhvdGLDLSSNPLLYMMRC 598
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  93 WQNVafrLRQRMsddRARgialdkLARVGLGPETAdLMPA-ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpirARA 171
Cdd:PLN03073  599 FPGV---PEQKL---RAH------LGSFGVTGNLA-LQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDA 662
                         170       180
                  ....*....|....*....|..
gi 1608348115 172 IDALIRGIVTETGATaLTITHD 193
Cdd:PLN03073  663 VEALIQGLVLFQGGV-LMVSHD 683
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
133-195 2.85e-05

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 44.78  E-value: 2.85e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 133 ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpIRAR-AIDALIRGIvTETGATALTITHDMA 195
Cdd:COG1245   212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLD-IYQRlNVARLIREL-AEEGKYVLVVEHDLA 273
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
133-195 3.09e-05

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 44.41  E-value: 3.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348115 133 ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpIRARAIDA-LIRGIVteTGATALTITHDMA 195
Cdd:PRK13409  212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQRLNVArLIRELA--EGKYVLVVEHDLA 272
ABC_UvrA_II cd03271
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ...
114-217 5.35e-05

ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213238 [Multi-domain]  Cd Length: 261  Bit Score: 43.37  E-value: 5.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 114 LDKLARVGLG------PETadlmpaELSGGMAKRAGLARAI---ADDPQIIFFDEPTTGL--DPIRaRAIDALIRgiVTE 182
Cdd:cd03271   150 LQTLCDVGLGyiklgqPAT------TLSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLhfHDVK-KLLEVLQR--LVD 220
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1608348115 183 TGATALTITHDMaSVARIGDRVALL------QGGRIVHDGP 217
Cdd:cd03271   221 KGNTVVVIEHNL-DVIKCADWIIDLgpeggdGGGQVVASGT 260
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
5-193 5.67e-05

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 43.57  E-value: 5.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   5 RGLQKTFGATR-VLDGVDLTVGQGESLCVIGQSGTGKSVLLKCILGLEAPEAGrilwqgrpldraaRARFLAGF--GMLF 81
Cdd:PRK11819   10 NRVSKVVPPKKqILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG-------------EARPAPGIkvGYLP 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  82 QGAALFDSLSVWQNV------AFRLRQR-------MSDDRArgiALDKLARvglgpETADL------------------- 129
Cdd:PRK11819   77 QEPQLDPEKTVRENVeegvaeVKAALDRfneiyaaYAEPDA---DFDALAA-----EQGELqeiidaadawdldsqleia 148
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608348115 130 MPA-----------ELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDpirARAIDALIRGIVTETGaTALTITHD 193
Cdd:PRK11819  149 MDAlrcppwdakvtKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAWLEQFLHDYPG-TVVAVTHD 219
PLN03140 PLN03140
ABC transporter G family member; Provisional
128-217 2.21e-04

ABC transporter G family member; Provisional


Pssm-ID: 215599 [Multi-domain]  Cd Length: 1470  Bit Score: 42.14  E-value: 2.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  128 DLMPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATAL-TITHDMASVARIGDRVAL 206
Cdd:PLN03140   331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLmSLLQPAPETFDLFDDIIL 410
                           90
                   ....*....|.
gi 1608348115  207 LQGGRIVHDGP 217
Cdd:PLN03140   411 LSEGQIVYQGP 421
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
26-209 2.50e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 40.05  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115   26 QGESLCVIGQSGTGKSVLLKCILGLEAPEAGRILwqgrpldraararflagfgmlfqgaalfdslsvwqnvafrlrqRMS 105
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------------------------------------YID 37
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  106 DDRARGIALDKLARVGLGPEtadlmPAELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVT---- 181
Cdd:smart00382  38 GEDILEEVLDQLLLIIVGGK-----KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLlllk 112
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1608348115  182 -ETGATALTITH------DMASVARIGDRVALLQG 209
Cdd:smart00382 113 sEKNLTVILTTNdekdlgPALLRRRFDRRIVLLLI 147
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
132-197 4.57e-04

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 41.17  E-value: 4.57e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608348115  132 AELSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAIDALIRGIVTETGATALTITHDMASV 197
Cdd:PTZ00265   578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643
ABC_UvrA_I cd03270
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ...
114-216 7.66e-04

ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213237 [Multi-domain]  Cd Length: 226  Bit Score: 39.55  E-value: 7.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 114 LDKLARVGLGPETADLMPAELSGGMAKRAGLARAI-ADDPQIIF-FDEPTTGLDPiraRAIDALIRGI--VTETGATALT 189
Cdd:cd03270   118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIgSGLTGVLYvLDEPSIGLHP---RDNDRLIETLkrLRDLGNTVLV 194
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1608348115 190 ITHDMASVaRIGDRV------ALLQGGRIVHDG 216
Cdd:cd03270   195 VEHDEDTI-RAADHVidigpgAGVHGGEIVAQG 226
ABC_Rad50 cd03240
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ...
129-193 1.09e-03

ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.


Pssm-ID: 213207 [Multi-domain]  Cd Length: 204  Bit Score: 39.13  E-value: 1.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348115 129 LMPAELSGG------MAKRAGLARAIADDPQIIFFDEPTTGLDPIRAR-AIDALIRGIVTETGATALTITHD 193
Cdd:cd03240   111 DMRGRCSGGekvlasLIIRLALAETFGSNCGILALDEPTTNLDEENIEeSLAEIIEERKSQKNFQLIVITHD 182
uvra TIGR00630
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ...
114-194 2.23e-03

excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273184 [Multi-domain]  Cd Length: 925  Bit Score: 38.84  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 114 LDKLARVGLG------PETAdlmpaeLSGGMAKRAGLARAI---ADDPQIIFFDEPTTGL--DPIRaRAIDALIRGIvtE 182
Cdd:TIGR00630 810 LQTLCDVGLGyirlgqPATT------LSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLhfDDIK-KLLEVLQRLV--D 880
                          90
                  ....*....|..
gi 1608348115 183 TGATALTITHDM 194
Cdd:TIGR00630 881 KGNTVVVIEHNL 892
UvrA COG0178
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
114-194 2.60e-03

Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];


Pssm-ID: 439948 [Multi-domain]  Cd Length: 941  Bit Score: 38.85  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115 114 LDKLARVGLG------PETadlmpaELSGGMAKRAGLARAIA--DDPQIIF-FDEPTTGL--DPIRA--RAIDALIrgiv 180
Cdd:COG0178   807 LQTLQDVGLGyiklgqPAT------TLSGGEAQRVKLASELSkrSTGKTLYiLDEPTTGLhfHDIRKllEVLHRLV---- 876
                          90
                  ....*....|....
gi 1608348115 181 tETGATALTITHDM 194
Cdd:COG0178   877 -DKGNTVVVIEHNL 889
PLN03232 PLN03232
ABC transporter C family member; Provisional
134-216 3.17e-03

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 38.42  E-value: 3.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  134 LSGGMAKRAGLARAIADDPQIIFFDEPTTGLDPIRARAI-DALIRGIVteTGATALTITHDMASVARIgDRVALLQGGRI 212
Cdd:PLN03232   741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVfDSCMKDEL--KGKTRVLVTNQLHFLPLM-DRIILVSEGMI 817

                   ....
gi 1608348115  213 VHDG 216
Cdd:PLN03232   818 KEEG 821
PRK00635 PRK00635
excinuclease ABC subunit A; Provisional
114-221 3.43e-03

excinuclease ABC subunit A; Provisional


Pssm-ID: 234806 [Multi-domain]  Cd Length: 1809  Bit Score: 38.66  E-value: 3.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  114 LDKLARVGLGPETADLMPAELSGGMAKRAGLARAIADDPQIIFF--DEPTTGLDPiraRAIDALIRGI--VTETGATALT 189
Cdd:PRK00635   457 LSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYilDEPSIGLHP---QDTHKLINVIkkLRDQGNTVLL 533
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1608348115  190 ITHD--MASVArigdrvallqgGRIVHDGPVAGM 221
Cdd:PRK00635   534 VEHDeqMISLA-----------DRIIDIGPGAGI 556
PRK00635 PRK00635
excinuclease ABC subunit A; Provisional
134-210 3.75e-03

excinuclease ABC subunit A; Provisional


Pssm-ID: 234806 [Multi-domain]  Cd Length: 1809  Bit Score: 38.27  E-value: 3.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348115  134 LSGGMAKRAGLAR---AIADDPQIIFFDEPTTGLdpiRARAIDALIRGI--VTETGATALTITHDMaSVARIGDRVALL- 207
Cdd:PRK00635   810 LSGGEIQRLKLAYellAPSKKPTLYVLDEPTTGL---HTHDIKALIYVLqsLTHQGHTVVIIEHNM-HVVKVADYVLELg 885

                   ....
gi 1608348115  208 -QGG 210
Cdd:PRK00635   886 pEGG 889
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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