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Conserved domains on  [gi|1608039543|gb|QBX11469|]
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hypothetical protein JavanS58_0014 [Streptococcus satellite phage Javan58]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6290 super family cl46766
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 21-54 1.95e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


The actual alignment was detected with superfamily member pfam19807:

Pssm-ID: 481106  Cd Length: 72  Bit Score: 34.84  E-value: 1.95e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 1608039543 21 ITVRISQGLDEKVQAYADNHGLTKPEAIRKALED 54
Cdd:pfam19807  4 ISVRLNEEEEELIKKYAKLKGISLSELIRQALLE 37
 
Name Accession Description Interval E-value
DUF6290 pfam19807
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 21-54 1.95e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 437639  Cd Length: 72  Bit Score: 34.84  E-value: 1.95e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 1608039543 21 ITVRISQGLDEKVQAYADNHGLTKPEAIRKALED 54
Cdd:pfam19807  4 ISVRLNEEEEELIKKYAKLKGISLSELIRQALLE 37
PHA01748 PHA01748
hypothetical protein
 20-55 6.99e-04

hypothetical protein


Pssm-ID: 222832  Cd Length: 60  Bit Score: 33.60  E-value: 6.99e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1608039543 20 KITVRISQGLDEKVQAYADNHGLTKPEAIRKALEDL 55
Cdd:PHA01748   4 VITFKIEEDLLELLDRYAIKHGLNRSEAIRKAIEKM 39
 
Name Accession Description Interval E-value
DUF6290 pfam19807
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 21-54 1.95e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 437639  Cd Length: 72  Bit Score: 34.84  E-value: 1.95e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 1608039543 21 ITVRISQGLDEKVQAYADNHGLTKPEAIRKALED 54
Cdd:pfam19807  4 ISVRLNEEEEELIKKYAKLKGISLSELIRQALLE 37
PHA01748 PHA01748
hypothetical protein
 20-55 6.99e-04

hypothetical protein


Pssm-ID: 222832  Cd Length: 60  Bit Score: 33.60  E-value: 6.99e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1608039543 20 KITVRISQGLDEKVQAYADNHGLTKPEAIRKALEDL 55
Cdd:PHA01748   4 VITFKIEEDLLELLDRYAIKHGLNRSEAIRKAIEKM 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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