NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1608037157|gb|QBX09202|]
View 

hypothetical protein JavanS324_0013 [Streptococcus satellite phage Javan324]

Protein Classification

Rha family transcriptional regulator( domain architecture ID 11466542)

Rha family transcriptional regulator is a regulatory protein found in temperate phage and bacterial prophage regions

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
9-131 3.53e-18

Phage regulatory protein Rha [Mobilome: prophages, transposons];


:

Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 78.88  E-value: 3.53e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037157   9 KKEPYTTSEIIAECAEVQHHTITRLVRDNKADFEA--LGILGFKIHKL--DKRGQPKKIYLLNEQQATLLITYLKNtEPV 84
Cdd:COG3646    11 NGEPVTSSREIAELFGKRHKNVLRDIRKLISDLESpeFGQLNFEESTYedSQNGRERPEYLLTKDGFTLLVMGFTG-KKA 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1608037157  85 RQFKMNLVKAFFEMRDELSKRylqreleKPKRKTLTEAIQAWEKAPK 131
Cdd:COG3646    90 AEFKAAYIDRFNEMEEQLKQQ-------SALPQTLTEALRALAEQEE 129
 
Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
9-131 3.53e-18

Phage regulatory protein Rha [Mobilome: prophages, transposons];


Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 78.88  E-value: 3.53e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037157   9 KKEPYTTSEIIAECAEVQHHTITRLVRDNKADFEA--LGILGFKIHKL--DKRGQPKKIYLLNEQQATLLITYLKNtEPV 84
Cdd:COG3646    11 NGEPVTSSREIAELFGKRHKNVLRDIRKLISDLESpeFGQLNFEESTYedSQNGRERPEYLLTKDGFTLLVMGFTG-KKA 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1608037157  85 RQFKMNLVKAFFEMRDELSKRylqreleKPKRKTLTEAIQAWEKAPK 131
Cdd:COG3646    90 AEFKAAYIDRFNEMEEQLKQQ-------SALPQTLTEALRALAEQEE 129
Phage_pRha pfam09669
Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in ...
 14-99 5.31e-16

Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.


Pssm-ID: 462849 [Multi-domain]  Cd Length: 91  Bit Score: 69.94  E-value: 5.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037157  14 TTSEIIAECAEVQHHTITRLVRDNKADFEALG--ILGFKIHK---LDKRGQPKKIYLLNEQQATLLiTYLKNTEPVRQFK 88
Cdd:pfam09669   1 TTSLEVAELFGKRHKNVLRDIRKLIKDLEEFGedFRELNFEEspyKDSQGRKRPCYLLTRDGFTLL-AMGFTGKKAVEFK 79

                          90
                  ....*....|.
gi 1608037157  89 MNLVKAFFEMR 99
Cdd:pfam09669  80 AKYIKAFNEME 90
 
Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
9-131 3.53e-18

Phage regulatory protein Rha [Mobilome: prophages, transposons];


Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 78.88  E-value: 3.53e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037157   9 KKEPYTTSEIIAECAEVQHHTITRLVRDNKADFEA--LGILGFKIHKL--DKRGQPKKIYLLNEQQATLLITYLKNtEPV 84
Cdd:COG3646    11 NGEPVTSSREIAELFGKRHKNVLRDIRKLISDLESpeFGQLNFEESTYedSQNGRERPEYLLTKDGFTLLVMGFTG-KKA 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1608037157  85 RQFKMNLVKAFFEMRDELSKRylqreleKPKRKTLTEAIQAWEKAPK 131
Cdd:COG3646    90 AEFKAAYIDRFNEMEEQLKQQ-------SALPQTLTEALRALAEQEE 129
Phage_pRha pfam09669
Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in ...
 14-99 5.31e-16

Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.


Pssm-ID: 462849 [Multi-domain]  Cd Length: 91  Bit Score: 69.94  E-value: 5.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037157  14 TTSEIIAECAEVQHHTITRLVRDNKADFEALG--ILGFKIHK---LDKRGQPKKIYLLNEQQATLLiTYLKNTEPVRQFK 88
Cdd:pfam09669   1 TTSLEVAELFGKRHKNVLRDIRKLIKDLEEFGedFRELNFEEspyKDSQGRKRPCYLLTRDGFTLL-AMGFTGKKAVEFK 79

                          90
                  ....*....|.
gi 1608037157  89 MNLVKAFFEMR 99
Cdd:pfam09669  80 AKYIKAFNEME 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH