|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
30-253 |
6.03e-22 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 92.01 E-value: 6.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 30 VPVLGGSERKVQAFCpECVKGEIKQKEKDllqqfEDRQAYFKTYDVLMRDSTIPNELKGATFDNFFVkTTEERQMLEFVK 109
Cdd:PRK08116 29 VVELLGKNRIVPIMC-ECEREAEEAKERE-----EENREKQRRIERLKSNSLLDEKFRNSTFENFLF-DKGSEKAYKIAR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 110 GQAQKY--LAGMTGNTLISGSTGIGKSHLSLALAKEInesfREKNEPksVLFVSLTEIIKQIKEgwAYGRNANLTEYEAV 187
Cdd:PRK08116 102 KYVKKFeeMKKENVGLLLWGSVGTGKTYLAACIANEL----IEKGVP--VIFVNFPQLLNRIKS--TYKSSGKEDENEII 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 188 KKLVDVDFLIIDDLGAKNGTvtpksDWEQDFLFDIINNR----ETTIFNTNLDSSELRTVYNARNSSRIL 253
Cdd:PRK08116 174 RSLVNADLLILDDLGAERDT-----EWAREKVYNIIDSRyrkgLPTIVTTNLSLEELKNQYGKRIYDRIL 238
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
76-240 |
3.41e-19 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 84.06 E-value: 3.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 76 LMRDSTIPnelKGATFDNF---FVKTTEERQMLEFVKGQaqkYLAGMTgNTLISGSTGIGKSHLSLALAKE-INESFRek 151
Cdd:COG1484 59 RLKAARFP---AAKTLEDFdfdAQPGLDRRQILELATLD---FIERGE-NLILLGPPGTGKTHLAIALGHEaCRAGYR-- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 152 nepksVLFVSLTEIIKQIKEGWAYGRnanltEYEAVKKLVDVDFLIIDDLGAkngtvTPKSDWEQDFLFDIINNRE---T 228
Cdd:COG1484 130 -----VRFTTAPDLVNELKEARADGR-----LERLLKRLAKVDLLILDELGY-----LPLDAEGAELLFELISDRYerrS 194
|
170
....*....|..
gi 1608037151 229 TIFNTNLDSSEL 240
Cdd:COG1484 195 TIITSNLPFSEW 206
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
88-239 |
8.75e-11 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 60.56 E-value: 8.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 88 GATFDNF---FVKTTEERQM-----LEFVKGQAqkylagmtgNTLISGSTGIGKSHLSLALAKEinesFREKNepKSVLF 159
Cdd:NF038214 59 AKTLEDFdftAAPGLDKAQIrelatLDFIERAE---------NVLLLGPPGTGKTHLAIALGYA----ACRQG--YRVRF 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 160 VSLTEIIKQIKEGwaygrNANLTEYEAVKKLVDVDFLIIDDLGakngtVTPKSDWEQDFLFDIINNR-ET--TIFNTNLD 236
Cdd:NF038214 124 TTAADLVEQLAQA-----RADGRLGRLLRRLARYDLLIIDELG-----YLPFSREGANLLFELIADRyERgsTIITSNLP 193
|
...
gi 1608037151 237 SSE 239
Cdd:NF038214 194 FSE 196
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
76-235 |
2.17e-05 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 44.74 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 76 LMRDSTIPNELKGATFDNFFVKTTEERQM-----LEFVKGQAqkylagmtgNTLISGSTGIGKSHLSLALAKeinESFRE 150
Cdd:pfam01695 52 LLRMAKLPPHKTLEDFDFTFAPGLDQRIVaelasLSFIDRAQ---------NVVLLGPPGVGKTHLAIALGV---EACRA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 151 KnepKSVLFVSLTEIIKQIKEGWAYGRnanlteyeAVKKL---VDVDFLIIDDLGakngtVTPKSDWEQDFLFDIINNR- 226
Cdd:pfam01695 120 G---YSVRFTSAADLVNQLKRAHGDGK--------LTRKLqqlLKPDVLILDEWG-----YLPLDQAEANLLFQVISKRy 183
|
170
....*....|.
gi 1608037151 227 --ETTIFNTNL 235
Cdd:pfam01695 184 ehRSIILTSNL 194
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
90-224 |
1.10e-04 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 43.29 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVktTEERQM-----LEFVKGQAQKYlagmtgNTL-ISGSTGIGKSHLSLALAKEINESFREKNepksVLFVS-- 161
Cdd:TIGR00362 109 TFDNFVV--GKSNRLahaaaLAVAENPGKAY------NPLfIYGGVGLGKTHLLHAIGNEILENNPNAK----VLYVSse 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608037151 162 --LTEIIKQIkegwaygRNANLTEYEavKKLVDVDFLIIDD---LGAKNGTvtpksdweQDFLFDIIN 224
Cdd:TIGR00362 177 kfTNDFVNAL-------RNNKMEEFK--EKYRSVDLLLIDDiqfLAGKERT--------QEEFFHTFN 227
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
121-240 |
1.44e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 41.36 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 121 GNTLISGSTGIGKSHLSLALAKEINESFreknepKSVLFVSLTEIIKQIKEGWAYGRNANLTEYEAVKKlVDVDFLIIDD 200
Cdd:cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPG------APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEK-AKPGVLFIDE 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1608037151 201 LGAkngtVTPKSDWEQDFLFDIINNRET------TIFNTNLDSSEL 240
Cdd:cd00009 93 IDS----LSRGAQNALLRVLETLNDLRIdrenvrVIGATNRPLLGD 134
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
121-203 |
3.92e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.05 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 121 GNTLISGSTGIGKSHLSLALAKEINESFreknepKSVLFVSLTEI----IKQIKEGWAYGRNANLTEYEAVKKLV----- 191
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDIleevLDQLLLIIVGGKKASGSGELRLRLALalark 76
|
90
....*....|...
gi 1608037151 192 -DVDFLIIDDLGA 203
Cdd:smart00382 77 lKPDVLILDEITS 89
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
30-253 |
6.03e-22 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 92.01 E-value: 6.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 30 VPVLGGSERKVQAFCpECVKGEIKQKEKDllqqfEDRQAYFKTYDVLMRDSTIPNELKGATFDNFFVkTTEERQMLEFVK 109
Cdd:PRK08116 29 VVELLGKNRIVPIMC-ECEREAEEAKERE-----EENREKQRRIERLKSNSLLDEKFRNSTFENFLF-DKGSEKAYKIAR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 110 GQAQKY--LAGMTGNTLISGSTGIGKSHLSLALAKEInesfREKNEPksVLFVSLTEIIKQIKEgwAYGRNANLTEYEAV 187
Cdd:PRK08116 102 KYVKKFeeMKKENVGLLLWGSVGTGKTYLAACIANEL----IEKGVP--VIFVNFPQLLNRIKS--TYKSSGKEDENEII 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 188 KKLVDVDFLIIDDLGAKNGTvtpksDWEQDFLFDIINNR----ETTIFNTNLDSSELRTVYNARNSSRIL 253
Cdd:PRK08116 174 RSLVNADLLILDDLGAERDT-----EWAREKVYNIIDSRyrkgLPTIVTTNLSLEELKNQYGKRIYDRIL 238
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
76-240 |
3.41e-19 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 84.06 E-value: 3.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 76 LMRDSTIPnelKGATFDNF---FVKTTEERQMLEFVKGQaqkYLAGMTgNTLISGSTGIGKSHLSLALAKE-INESFRek 151
Cdd:COG1484 59 RLKAARFP---AAKTLEDFdfdAQPGLDRRQILELATLD---FIERGE-NLILLGPPGTGKTHLAIALGHEaCRAGYR-- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 152 nepksVLFVSLTEIIKQIKEGWAYGRnanltEYEAVKKLVDVDFLIIDDLGAkngtvTPKSDWEQDFLFDIINNRE---T 228
Cdd:COG1484 130 -----VRFTTAPDLVNELKEARADGR-----LERLLKRLAKVDLLILDELGY-----LPLDAEGAELLFELISDRYerrS 194
|
170
....*....|..
gi 1608037151 229 TIFNTNLDSSEL 240
Cdd:COG1484 195 TIITSNLPFSEW 206
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
74-253 |
1.48e-17 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 81.10 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 74 DVLMRDSTIPNELKGATFDNFFV----------KTTEERQMLEFVKGQAQKYLAGMTG---NTLISGSTGIGKSHLSLAL 140
Cdd:PRK06835 124 NLYYKQSNLKEILKEENFSNFNLnyysdekdddEPLSPRKNMEKILEKCKNFIENFDKnneNLLFYGNTGTGKTFLSNCI 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 141 AKEINESFreknepKSVLFVSLTEIIKQIKEgwaYGRNANLTEYEAVKKLVDVDFLIIDDLGAKNGTVTPKSDweqdfLF 220
Cdd:PRK06835 204 AKELLDRG------KSVIYRTADELIEILRE---IRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEFSKSE-----LF 269
|
170 180 190
....*....|....*....|....*....|....*..
gi 1608037151 221 DIINNR----ETTIFNTNLDSSELRTVYNARNSSRIL 253
Cdd:PRK06835 270 NLINKRllrqKKMIISTNLSLEELLKTYSERISSRLL 306
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
88-239 |
8.75e-11 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 60.56 E-value: 8.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 88 GATFDNF---FVKTTEERQM-----LEFVKGQAqkylagmtgNTLISGSTGIGKSHLSLALAKEinesFREKNepKSVLF 159
Cdd:NF038214 59 AKTLEDFdftAAPGLDKAQIrelatLDFIERAE---------NVLLLGPPGTGKTHLAIALGYA----ACRQG--YRVRF 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 160 VSLTEIIKQIKEGwaygrNANLTEYEAVKKLVDVDFLIIDDLGakngtVTPKSDWEQDFLFDIINNR-ET--TIFNTNLD 236
Cdd:NF038214 124 TTAADLVEQLAQA-----RADGRLGRLLRRLARYDLLIIDELG-----YLPFSREGANLLFELIADRyERgsTIITSNLP 193
|
...
gi 1608037151 237 SSE 239
Cdd:NF038214 194 FSE 196
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
90-255 |
4.93e-10 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 58.63 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVKTTEERQMLEfvkgQAQKYLAGMTGNT---LISGSTGIGKSHLSLALAKEInesfreKNEPKSVLFVSLTEII 166
Cdd:PRK07952 70 SFENYRVECEGQMNALS----KARQYVEEFDGNIasfIFSGKPGTGKNHLAAAICNEL------LLRGKSVLIITVADIM 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 167 KQIKEGWaygRNANLTEYEAVKKLVDVDFLIIDDLGakngtVTPKSDWEQDFLFDIINNRET----TIFNTNLDSSELRT 242
Cdd:PRK07952 140 SAMKDTF---SNSETSEEQLLNDLSNVDLLVIDEIG-----VQTESRYEKVIINQIVDRRSSskrpTGMLTNSNMEEMTK 211
|
170
....*....|...
gi 1608037151 243 VYNARNSSRILKG 255
Cdd:PRK07952 212 LLGERVMDRMRLG 224
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
90-252 |
1.98e-09 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 56.77 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVKTTEERQMLEFVKGQAQKYLAGMTgNTLISGSTGIGKSHLSLALAKEINESFReknepkSVLFVSLTEIIKQI 169
Cdd:PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGCT-NFVFSGKPGTGKNHLAAAIGNRLLAKGR------SVIVVTVPDVMSRL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 170 KEGWAYGRnanlTEYEAVKKLVDVDFLIIDDLGAKNGTVTpksdwEQDFLFDIINNRETTIFN----TNLDSSELRTVYN 245
Cdd:PRK12377 145 HESYDNGQ----SGEKFLQELCKVDLLVLDEIGIQRETKN-----EQVVLNQIIDRRTASMRSvgmlTNLNHEAMSTLLG 215
|
....*..
gi 1608037151 246 ARNSSRI 252
Cdd:PRK12377 216 ERVMDRM 222
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
44-240 |
9.24e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 49.10 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 44 CPECVKGEIKQKEKDLLQqfedrqayfktydvLMrdsTIPNELKGATFDNFFVKTTEERQMLEFVKGQAQKYLAGMTGNT 123
Cdd:PRK08939 96 TPEKIEADEEKAIKKRIQ--------------SI---YMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 124 L-ISGSTGIGKSHLSLALAKEInesfreKNEPKSVLFVSLTEIIKQIKEgwAYGRNANLTEYEAVKKlvdVDFLIIDDLG 202
Cdd:PRK08939 159 LyLYGDFGVGKSYLLAAIANEL------AKKGVSSTLLHFPEFIRELKN--SISDGSVKEKIDAVKE---APVLMLDDIG 227
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1608037151 203 AKngTVTPksdWEQDFLFDII-----NNRETTIFNTNLDSSEL 240
Cdd:PRK08939 228 AE--QMSS---WVRDEVLGVIlqyrmQEELPTFFTSNFDFDEL 265
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
90-224 |
2.34e-06 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 47.88 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFV-KTTEE-RQMLEFVkgqAQKylAGMTGNTL-ISGSTGIGKSHLSLALAKEInesfREKNEPKSVLFVS----L 162
Cdd:COG0593 6 TFDNFVVgPSNRLaHAAALAV---AEW--PGKAYNPLfLYGGVGLGKTHLLHAIGNEA----LENNPGARVVYLTaeefT 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608037151 163 TEIIKQIkegwaygRNANLTEYEavKKLVDVDFLIIDD---LGAKNGTvtpksdweQDFLFDIIN 224
Cdd:COG0593 77 NDFINAI-------RNNTIEEFK--EKYRSVDVLLIDDiqfLAGKEAT--------QEEFFHTFN 124
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
76-235 |
2.17e-05 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 44.74 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 76 LMRDSTIPNELKGATFDNFFVKTTEERQM-----LEFVKGQAqkylagmtgNTLISGSTGIGKSHLSLALAKeinESFRE 150
Cdd:pfam01695 52 LLRMAKLPPHKTLEDFDFTFAPGLDQRIVaelasLSFIDRAQ---------NVVLLGPPGVGKTHLAIALGV---EACRA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 151 KnepKSVLFVSLTEIIKQIKEGWAYGRnanlteyeAVKKL---VDVDFLIIDDLGakngtVTPKSDWEQDFLFDIINNR- 226
Cdd:pfam01695 120 G---YSVRFTSAADLVNQLKRAHGDGK--------LTRKLqqlLKPDVLILDEWG-----YLPLDQAEANLLFQVISKRy 183
|
170
....*....|.
gi 1608037151 227 --ETTIFNTNL 235
Cdd:pfam01695 184 ehRSIILTSNL 194
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
88-226 |
3.45e-05 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 44.15 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 88 GATFDNF---FVKTTEERQMLEFVKGQAqkYLAgMTGNTLISGSTGIGKSHLSLALAKEINES-FReknepksVLFVSLT 163
Cdd:PRK08181 74 GKTLDSFdfeAVPMVSKAQVMAIAAGDS--WLA-KGANLLLFGPPGGGKSHLAAAIGLALIENgWR-------VLFTRTT 143
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608037151 164 EIIKQIKegwAYGRNANLTeyEAVKKLVDVDFLIIDDLgaknGTVTpKSDWEQDFLFDIINNR 226
Cdd:PRK08181 144 DLVQKLQ---VARRELQLE--SAIAKLDKFDLLILDDL----AYVT-KDQAETSVLFELISAR 196
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
90-224 |
1.10e-04 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 43.29 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVktTEERQM-----LEFVKGQAQKYlagmtgNTL-ISGSTGIGKSHLSLALAKEINESFREKNepksVLFVS-- 161
Cdd:TIGR00362 109 TFDNFVV--GKSNRLahaaaLAVAENPGKAY------NPLfIYGGVGLGKTHLLHAIGNEILENNPNAK----VLYVSse 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608037151 162 --LTEIIKQIkegwaygRNANLTEYEavKKLVDVDFLIIDD---LGAKNGTvtpksdweQDFLFDIIN 224
Cdd:TIGR00362 177 kfTNDFVNAL-------RNNKMEEFK--EKYRSVDLLLIDDiqfLAGKERT--------QEEFFHTFN 227
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
90-224 |
1.17e-04 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 43.20 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVktTEERQM-----LEFVKGQAQKYlagmtgNTL-ISGSTGIGKSHLSLALAKEInesfREKNEPKSVLFVS-- 161
Cdd:PRK00149 71 TFDNFVV--GKSNRLahaaaLAVAENPGKAY------NPLfIYGGVGLGKTHLLHAIGNYI----LEKNPNAKVVYVTse 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608037151 162 --LTEIIKQIKEGwaygrnanltEYEAVK-KLVDVDFLIIDD---LGAKNGTvtpksdweQDFLFDIIN 224
Cdd:PRK00149 139 kfTNDFVNALRNN----------TMEEFKeKYRSVDVLLIDDiqfLAGKERT--------QEEFFHTFN 189
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
121-240 |
1.44e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 41.36 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 121 GNTLISGSTGIGKSHLSLALAKEINESFreknepKSVLFVSLTEIIKQIKEGWAYGRNANLTEYEAVKKlVDVDFLIIDD 200
Cdd:cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPG------APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEK-AKPGVLFIDE 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1608037151 201 LGAkngtVTPKSDWEQDFLFDIINNRET------TIFNTNLDSSEL 240
Cdd:cd00009 93 IDS----LSRGAQNALLRVLETLNDLRIdrenvrVIGATNRPLLGD 134
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
121-203 |
3.92e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.05 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 121 GNTLISGSTGIGKSHLSLALAKEINESFreknepKSVLFVSLTEI----IKQIKEGWAYGRNANLTEYEAVKKLV----- 191
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDIleevLDQLLLIIVGGKKASGSGELRLRLALalark 76
|
90
....*....|...
gi 1608037151 192 -DVDFLIIDDLGA 203
Cdd:smart00382 77 lKPDVLILDEITS 89
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
90-225 |
5.29e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 40.39 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 90 TFDNFFVKTTEErqmLEFVKGQAQKYLAGMTGNTL-ISGSTGIGKSHLSLALAKEINESFREKNepksVLFVS----LTE 164
Cdd:pfam00308 6 TFENFVIGPSNR---FAHAAALTVAKAPGKAYNPLfIYGGVGLGKTHLLHAIGNYALQNAPNLR----VVYLTaeefLND 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608037151 165 IIKQIKEGwaygrnanltEYEAVK-KLVDVDFLIIDD---LGAKNGTvtpksdweQDFLFDIINN 225
Cdd:pfam00308 79 FVDAIRDN----------KTNQFKeKYRNVDVLLIDDiqfLAGKEGT--------QEEFFHTFNA 125
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
76-274 |
7.10e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 40.15 E-value: 7.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 76 LMRDSTIPNELKGATFDNFFVK------------TTEERQMLEFVKGQAQKYLAgmtgntlISGSTGIGKSHLSLALAke 143
Cdd:PRK06921 68 LLKASEITEAFRKLTFKNFKTEgkpqaikdayecAVEYVKDFEKIQESRKNSIA-------LLGQPGSGKTHLLTAAA-- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 144 iNESFREKNEPksVLFVSLTEIIKQIKEGWAyGRNANLteyEAVKKlvdVDFLIIDDLGAKNGTVTPKSDWEQDFLFDII 223
Cdd:PRK06921 139 -NELMRKKGVP--VLYFPFVEGFGDLKDDFD-LLEAKL---NRMKK---VEVLFIDDLFKPVNGKPRATEWQIEQMYSVL 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1608037151 224 N----NRETTIFNTNLDSSELRTVYNARnSSRILKGLEGNTfkaFTIKDKRYTIN 274
Cdd:PRK06921 209 NyrylNHKPILISSELTIDELLDIDEAL-GSRIVEMCKDYL---VIIKGDSFELN 259
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
122-194 |
6.60e-03 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 37.23 E-value: 6.60e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608037151 122 NTLISGSTGIGKSHLSLALAKeinESFREKNEPksVLFVSLTEIIKQIKE-----GWaygrnaNLTEYEAVKKLVDVD 194
Cdd:pfam06745 21 VVLITGGPGTGKTIFGLQFLY---NGALKYGEP--GVFVTLEEPPEDLREnarsfGW------DLEKLEEEGKLAIID 87
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
96-170 |
6.76e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 37.13 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608037151 96 VKTTEERQML----EF--------VKGQAqkylagmtgnTLISGSTGIGKSHLSLALAKEInesfreKNEPKSVLFVSLT 163
Cdd:cd01121 56 VEAEEEERIStgigELdrvlggglVPGSV----------VLIGGDPGIGKSTLLLQVAARL------AQRGGKVLYVSGE 119
|
....*..
gi 1608037151 164 EIIKQIK 170
Cdd:cd01121 120 ESLSQIK 126
|
|
|