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Conserved domains on  [gi|1608035444|gb|QBX07580|]
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hypothetical protein JavanS156_0006 [Streptococcus satellite phage Javan156]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PocR super family cl48077
Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the ...
 1-41 6.92e-03

Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the PAS-like Fold. Evidence suggests that it binds small hydrocarbon derivatives such as 1,3-propanediol. In (Natural history of sensor domains in bacterial signaling systems by Aravind L, LM Iyer, Anantharaman V, from 'Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition.' Caister Academic Press. 2010) - see (http://de.scribd.com/doc/28576661/Bacterial-Signaling-Chapter)


The actual alignment was detected with superfamily member pfam10114:

Pssm-ID: 462959  Cd Length: 155  Bit Score: 32.93  E-value: 6.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1608035444   1 MKATTYKELKKWINE-GVDLAELAQAYaDKVPSVDREQFEAV 41
Cdd:pfam10114 100 LEDPDEEEFREQAREiGFDEEEYLEAL-EKVPVLSEEKVRAA 140
 
Name Accession Description Interval E-value
PocR pfam10114
Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the ...
 1-41 6.92e-03

Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the PAS-like Fold. Evidence suggests that it binds small hydrocarbon derivatives such as 1,3-propanediol. In (Natural history of sensor domains in bacterial signaling systems by Aravind L, LM Iyer, Anantharaman V, from 'Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition.' Caister Academic Press. 2010) - see (http://de.scribd.com/doc/28576661/Bacterial-Signaling-Chapter)


Pssm-ID: 462959  Cd Length: 155  Bit Score: 32.93  E-value: 6.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1608035444   1 MKATTYKELKKWINE-GVDLAELAQAYaDKVPSVDREQFEAV 41
Cdd:pfam10114 100 LEDPDEEEFREQAREiGFDEEEYLEAL-EKVPVLSEEKVRAA 140
 
Name Accession Description Interval E-value
PocR pfam10114
Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the ...
 1-41 6.92e-03

Sensory domain found in PocR; PocR, a ligand binding domain, has a novel variant of the PAS-like Fold. Evidence suggests that it binds small hydrocarbon derivatives such as 1,3-propanediol. In (Natural history of sensor domains in bacterial signaling systems by Aravind L, LM Iyer, Anantharaman V, from 'Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition.' Caister Academic Press. 2010) - see (http://de.scribd.com/doc/28576661/Bacterial-Signaling-Chapter)


Pssm-ID: 462959  Cd Length: 155  Bit Score: 32.93  E-value: 6.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1608035444   1 MKATTYKELKKWINE-GVDLAELAQAYaDKVPSVDREQFEAV 41
Cdd:pfam10114 100 LEDPDEEEFREQAREiGFDEEEYLEAL-EKVPVLSEEKVRAA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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