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Conserved domains on  [gi|1608035126|gb|QBX07276|]
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hypothetical protein JavanS13_0019 [Streptococcus satellite phage Javan13]

Protein Classification

TM2 domain-containing protein( domain architecture ID 10006330)

TM2 domain-containing protein similar to Bacillus subtilis membrane protein YozV

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-68 4.71e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


:

Pssm-ID: 441888  Cd Length: 79  Bit Score: 78.03  E-value: 4.71e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608035126  1 MPRKVNKVIYVLLALFLGEFGLHKFYAGKTGTGILYLIFCWTFIPGFIGVVEGILAILKPADQDGNFY 68
Cdd:COG2314    4 PKSEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNRRY 71
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-68 4.71e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 78.03  E-value: 4.71e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608035126  1 MPRKVNKVIYVLLALFLGEFGLHKFYAGKTGTGILYLIFCWTFIPGFIGVVEGILAILKPADQDGNFY 68
Cdd:COG2314    4 PKSEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNRRY 71
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 3-54 4.12e-09

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 46.72  E-value: 4.12e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1608035126  3 RKVNKVIYVLLALFLGEFGLHKFYAGKTGTGILYLIFCwtFIPGFIGVVEGI 54
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-68 4.71e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 78.03  E-value: 4.71e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608035126  1 MPRKVNKVIYVLLALFLGEFGLHKFYAGKTGTGILYLIFCWTFIPGFIGVVEGILAILKPADQDGNFY 68
Cdd:COG2314    4 PKSEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNRRY 71
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 3-54 4.12e-09

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 46.72  E-value: 4.12e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1608035126  3 RKVNKVIYVLLALFLGEFGLHKFYAGKTGTGILYLIFCwtFIPGFIGVVEGI 54
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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