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Conserved domains on  [gi|1607199624|gb|QBS36251|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Turnagra capensis minor]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-288 1.59e-148

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 419.61  E-value: 1.59e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLL 288
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-288 1.59e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 419.61  E-value: 1.59e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLL 288
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 4.77e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 112.02  E-value: 4.77e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDPVSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  96 -----LLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPT------LLTTMAIMSAAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 165 GGWMGLNQTQIRKIMAFSSISHLGWMTIII----IYNPKLTLLNFYLYALMTATVFLTFNS-----MKVLNLSMLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1607199624 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-288 2.44e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 2.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwQTGQWDITQLTD 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  92 PVS------------CLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK----FPPITLLFMTSQSLNPTLLT 155
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 156 TMAIMSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YALMTATVFLTFNSMK----- 223
Cdd:COG1007   271 LLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607199624 224 VLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-288 7.10e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 7.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  93 VSC------------LLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK---FPPITLLFMTSQS----LNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 154 LTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLN--FYL--YALMTATVFLTFNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607199624 227 ---LSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-288 1.59e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 419.61  E-value: 1.59e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLL 288
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-288 3.03e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 350.38  E-value: 3.03e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALL 288
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-287 7.71e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 349.49  E-value: 7.71e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSlNPTLLTTMAIM 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAA--MAIS-LLSL 287
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTAtlAALSaLLSL 289
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-288 1.20e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 313.32  E-value: 1.20e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-288 2.06e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 261.83  E-value: 2.06e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLL 288
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-287 5.13e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 248.31  E-value: 5.13e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQ 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 TGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIM 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQD---MTPAAMAISLLSL 287
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNsilISIILIIGSLLSL 290
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-288 1.49e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 179.63  E-value: 1.49e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   1 MNPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWq 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  81 tgqwdITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTsqsLNPTLLTTMAIM 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLI 280
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-288 2.13e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.51  E-value: 2.13e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   5 AKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  85 DITqltdpvscLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNP-TLLTTMAIMSAA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 164 LGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMlMTSWTKAPSLSTI 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLS 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAI---SLLSLL 288
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLllgSLISLF 283
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 1.47e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.48  E-value: 1.47e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   7 LVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawqTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  87 TQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAIMSAALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 167 WMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSLSTILLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1607199624 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 8.84e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.56  E-value: 8.84e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   8 VFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  88 qLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLfmTSQSLNPTLLTTMAIMSAALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 168 MGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSLSTILLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|...
gi 1607199624 248 LLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 4.77e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 112.02  E-value: 4.77e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDPVSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  96 -----LLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPT------LLTTMAIMSAAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 165 GGWMGLNQTQIRKIMAFSSISHLGWMTIII----IYNPKLTLLNFYLYALMTATVFLTFNS-----MKVLNLSMLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1607199624 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-288 2.44e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 2.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwQTGQWDITQLTD 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  92 PVS------------CLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK----FPPITLLFMTSQSLNPTLLT 155
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 156 TMAIMSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YALMTATVFLTFNSMK----- 223
Cdd:COG1007   271 LLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607199624 224 VLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.83e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 3.83e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  79 WQTGQWDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFmtSQSLNPTLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 159 IMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIII----IYNPKLTLLNFYLYALMTATVF---LTFNSMKVL-----N 226
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNLiiefsG 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1607199624 227 LSMLMtswtkaPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  240 LSRRL------PILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-288 7.10e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 7.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  93 VSC------------LLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK---FPPITLLFMTSQS----LNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 154 LTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLN--FYL--YALMTATVFLTFNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607199624 227 ---LSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-287 7.31e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.50  E-value: 7.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  93 VS------------CLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK---FPPIT-LLFMTSQSLNPT---L 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 154 LTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YALMTATVFLTFNSMK-----V 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1607199624 225 LNLSML-MTSWTKaPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSL 287
Cdd:PRK05777  353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSA 415
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.66e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.85  E-value: 1.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   8 VFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  87 ----TQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTtmAIMSA 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 163 ALGGWMGLNQTQIRKIMAFSSISHLGW----MTIIIIYNPKLTLLNFYLYALMTATVF---LTFNSMKVLNLSMLMTSwT 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-R 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1607199624 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-288 1.01e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.28  E-value: 1.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQL--- 89
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  90 -------TDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNP--------TLL 154
Cdd:COG0651   196 laeldpgLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 155 TTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLY----ALMTATVFLTFNSMKVL----N 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1607199624 227 LSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLL 417
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 3.35e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 3.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   3 PQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  74 SMTNAWQTGQ--------------WDITQLTDPVSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 140 TLLfmTSQSLNPTLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLY-------ALMT 212
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1607199624 213 ATVFLTF------------------NSMKVLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 7.73e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.19  E-value: 7.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   7 LVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSSM--TNAWQT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  82 GQWDI------TQLTDPVSCLL----LTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPP-------ITLLFM 144
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 145 TSQSLNPTLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIII-------YNPKLTLLNFYLYALMTATVFL 217
Cdd:CHL00049  274 FSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMNLGTFACI 353

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1607199624 218 TFNSMKV--LNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  354 VLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.84e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.92  E-value: 1.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWQTGQwdiTQLTD-------------PVSCLLLTAAISIKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 116 PEVLQGSPLTVGLVLSTIMKFP----PITLLFMTSQSLNP---TLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 189 WMTIIIIYNPKLTLLNFYLYalMTATVFLTFNSMKVLNLSMLMTS----------WTKAPSLSTILLLTLLSLAGLPPLT 258
Cdd:PRK02504  314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1607199624 259 GFLPK 263
Cdd:PRK02504  392 GFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.68e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.19  E-value: 3.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFS---------SMTNAWQTGQWDIT-QLTDPVSCLLLTAA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENpTVVAKIALALFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 102 ISIKLGLVPFHFWFPEVLQGSP--LTVGLVLSTIMKFPPITLLFMT--SQSLNPT----LLTTMAIMSAALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 174 QIRKIMAFSSISHLGWM------TIIIIYNPKLT----------LLNFYLYALMTATVFLT----FNSMKVLNLSMLMTS 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1607199624 234 WTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 5.74e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.41  E-value: 5.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQW--DITQLTD--------PVSCLLLTAAISIKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 119 LQGSPLTVGLVLSTIM---------KFPpITLLFMTSQSLNPTLLTtMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1607199624 190 MTI 192
Cdd:COG1008   314 VLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-288 9.20e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.74  E-value: 9.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwQTGQWDITQLTD--PVSCLLLTA------AIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 104 IKLGLVPFHFWFPEVLQGSPLTVGLVLSTI-----------MKFPPITLLFMTSQSLNpTLLTTMAIMSAALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLvtkvavyalirIYFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 173 TQIRKIMAFSSISHLGWMTIIIIYNPKLTLLN--FYL--YALMTATVFL-------TFNSMKVLNLSMLMTswtKAPSLS 241
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTA 369

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1607199624 242 TILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:PRK08375  370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLL 416
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 2.84e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.26  E-value: 2.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWQTG------QWDITQLTDPVSCLLLTA---AISIKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 119 ---LQGSPLTVGLVLST----IMKFpPITLLFMTSQSLNPtLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 192 IIIIYNPKLTLLN--FYLYA--LMTATVFL----TFNSMKVLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGavFQMIShgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 1607199624 264 WLIIQ 268
Cdd:TIGR01972 390 FLILL 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 8.91e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.83  E-value: 8.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWQTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  87 TQLTDPVSCL---LLTAAISI-------KLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPT---- 152
Cdd:PRK08676  191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1607199624 153 ----LLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIII 194
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 9.47e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.57  E-value: 9.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLT--DPVSCLLLTAAISIKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAtaDPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 111 FHFWFPEVLQGSPLTVGLVLSTIMK----FPPITLLFMTSQSLNPtlLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 187 LGWmtiiIIYNPKLTLLNFYLYALMTATVFLTFNSMKVLNLSMLMTSWTKAPSLSTILLLTLLSlAGLPPLTGFLPKWLI 266
Cdd:PRK07234  281 LGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMASFSI-AGFPLLAGFVSKVLT 355


                  ....*
gi 1607199624 267 IQELT 271
Cdd:PRK07234  356 LKNLL 360
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 1.07e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   2 NPQAKLVFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWQT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  82 GQWDITQLTDPVS-----------CLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMK------FPPITLLFM 144
Cdd:PRK08668  175 GTFDFADISQGLIndtstgfalivFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygFLLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 145 TSQSLN--------PTL---LTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYNPKLT----LLNFYLYA 209
Cdd:PRK08668  255 GTKLFSefgtyrgvPLFnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1607199624 210 LMTATVFLTFNSM----KVLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAI 282
Cdd:PRK08668  335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.17e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.27  E-value: 3.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  50 PRAIEAATKYFLVQAAASALVLFSSMT----NAWQTGQWDITQL-TDPVSC-------LLLTAAISIKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 118 VLQGSPLTVGLVLSTIMK--------------FPPITLLFMTsqslnptLLTTMAIMSAALGGWMGLNQTQIRKIMAFSS 183
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILLkmgaygllrfslplFPDASHEFAP-------IIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                         170
                  ....*....|.
gi 1607199624 184 ISHLGWMTIII 194
Cdd:PRK05846  310 ISHMGFVTLGI 320
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 6.94e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 6.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  96 LLLTAAISiKLGLVPFHFWFPEVLQgSPLTVGLVL-STIMKFPPITLL------FMTSQSLNPTLLTtMAIMSAALGGWM 168
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMA-APTPVSAYLhAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWR 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 169 GLNQTQIRKIMAFSSISHLGWMTIIIIYNPK------LTLLnfYLYALMTATVFLTF----NSMKVLNLSMLMTSWTKAP 238
Cdd:PRK12644  285 ALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 1607199624 239 SLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 9.29e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.62  E-value: 9.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  55 AATKYFLVQAAASALVLFSSMTNAWQTG--QWDITQL---TDPVSC-LLLTAAI----SIKLGLVPFHFWFPE--VLQGS 122
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDahVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1607199624 123 PLTVgLVLSTIMKFPPITLL------FMTSQSLNPTLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK06473  238 PVSV-LLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 1.22e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.30  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   7 LVFITSLLLgttITISSNHWVMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  86 ITQL------------TDPVSCLLLTAAISiKLGLVPFHFWFPEVLQGsPLTV------------GLVLstIMKFPPITl 141
Cdd:COG1009   194 FSELlaaaptilssplLTLILLLLLLGAFG-KSAQFPLHFWLPDAMEG-PTPVsallhaatmvkaGVYL--LARLSPLF- 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1607199624 142 lfmtsqSLNPTLLTTMAIMSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMTI 192
Cdd:COG1009   269 ------ALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 2.47e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 2.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624   9 FITSLLLgttiTISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSS----------MTNA 78
Cdd:PRK06458  117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  79 WQTGQW----DITQLTDPVSCLLLTAAISI----KLGLVPFHFWFPEVLQGSPLTVGLVLS---------TIMKFPPITL 141
Cdd:PRK06458  193 EMAILWtellKHASLLDPTLMKLAFVFLLIgfgtKVGLFPMHAWLPDAHSEAPSPVSALLSgvllnvalyAVLRYYILID 272

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1607199624 142 LFMTSQSLNPtLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTI 192
Cdd:PRK06458  273 AAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
29-263 3.97e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 3.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDI------------TQLTDPVSCL 96
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLsgilhsdvwaekPGLTTVVAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  97 LLTAAISiKLGLVPFHFWFPEVLQG-SPLTVGLVLSTIMKFPPITLL-FMTSQSLNPT---LLTTMAIMSAALGGWMGLN 171
Cdd:PRK12650  214 IAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 172 QTQIRKIMAFSSISHLGWM-TIIIIYNP-KLT--LLNFYLYALMTATVFLTFNSMK----VLNLSMLMTSWTKAPSLSTI 243
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVS 372

                         250       260
                  ....*....|....*....|
gi 1607199624 244 LLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  373 VTIAALSMAAVPPLFGFVSK 392
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 4.75e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.72  E-value: 4.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  55 AATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDP-----VSCLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLV 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607199624 130 LSTIM-KFPPITLLFMTSQSLNP-----TLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.48e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 1.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-----------SMTNAWQTGQWDITQLTDPVSCLLLTAA 101
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyaitgtlNMGDMFLIIQDLPTNRAIQIGVLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 102 ISIKLGLVPFHFWFPEVLQGSPLTVGLVLS----TIMKFPPITL--------LFMTSQSLNpTLLTTMAIMSAALGGWMG 169
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIVFGSVLA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 170 LNQTQIRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLY----ALMTATVFLT-------FNSMKVLNLSMLmtsWTKAP 238
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKSMP 374

                         250       260
                  ....*....|....*....|....*....
gi 1607199624 239 SLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  375 KITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 1.66e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 1.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  92 PVSCLLLTAAI--SIKLGLvpfHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMT-----SQSLNPTLLTTMAIMSAAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 165 GGWMGLNQTQIRKIMAFSSISHLGWMTIIIIY--NPKLTLLNFYLYALMTATVFL---------TFNSMKVLNLSMLMTS 233
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1607199624 234 wtkAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 1.70e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  96 LLLTAAISIKLGLVPFhFWFPEVLQGSPLTVGLVLSTIMK-------FPPITLLFMTSQSLNPTLLTTMAIMSAALGGWM 168
Cdd:PRK12663  211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 169 GLNQTQIRKIMAFSSISHLGWMTI-IIIYNPK-LTLLNFYLY---ALMTAtVFLTFNSMKVL----NLSMLMTSWTKAPS 239
Cdd:PRK12663  290 ALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPL 368

                         170       180
                  ....*....|....*....|....*....
gi 1607199624 240 LSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  369 FGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.04e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 4.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  55 AATKYFLVQAAASALVLFSSMTNAWQTGQWD------ITQ-LTDPVSCLLLTAAI---SIKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 124 LTVGLVLSTIMKFPPITL------LFMTSQSLNPTLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIIIIYN 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 198 PKLTLLN---------------FYLYALMTATVflTFNSMKVLNlsMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV--GTRDLDVLN--GLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 1607199624 263 KWLIIQ 268
Cdd:PRK07363  394 EFIVFQ 399
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-287 5.57e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  34 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQ-----LTDPVSCLLLTAAISIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 109 V------PFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNP--------TLLTTMAIMSAALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 175 IRKIMAFSSISHLGWMTIIIIYNPKLTLLNFYLYA----LMTATVFLTFNSM----KVLNLSMLMTSWTKAPSLSTILLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1607199624 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSL 287
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSI 410
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-288 1.77e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.90  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 109 VPFHFWFPEVLQgSPLTVGLVL-STIMKFPPITLLfmtsQSLNPTL------LTTMAIMSAA---LGGWMGLNQTQIRKI 178
Cdd:PRK12647  212 FPFHFWLPNAME-APTPVSAYLhSATMVKAGIYLL----ARLNPVLggtplwQTILPLFGGLtmlTGALLAVRQTDLKLI 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 179 MAFSSISHLGWMTIIIIYNPKLTLLNFYLY----ALMTATVFLTFNSMK-------VLNLSMLmtsWTKAPSLSTILLLT 247
Cdd:PRK12647  287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLA 363

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1607199624 248 LLSLAGLPPLTGFLPKWLIIQELTkqDMTPAAMAISLLSLL 288
Cdd:PRK12647  364 ALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVL 402
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.21e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  52 AIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTDPVSCLLLTAAISIKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 116 PEVLQGSPLTVGLVLSTIMKFPPITL------LFmtsqSLNPTLLTTMAI---MSAALGGWMGLNQTQIRKIMAFSSISH 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLvarmypVF----EQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQ 326


                  ....
gi 1607199624 187 LGWM 190
Cdd:PRK07376  327 LGYM 330
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
13-190 2.29e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 2.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  13 LLLGTTITISSNHWVM---AW--TGLEINTLailpLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDIT 87
Cdd:PRK08168  109 VLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  88 QL-----------TDPVSCLLLTAAISIKLGLVPFHFWFPEVLQgSPLTVGLVLST---------IMKFPPITLLFMTSQ 147
Cdd:PRK08168  185 ALwahlaaqgaspSLQAAALLLVLAVILKTAQLPVHGWLIQVME-APTPVSALLHAgvvnlggfvLIRFAPLLEQAPPAR 263

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1607199624 148 slnpTLLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK08168  264 ----WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.41e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 101 AISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTI-----------MKFPpitLLFMTSQSLNPTLLtTMAIMSAALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 1607199624 170 LNQTQIRKIMAFSSISHLGWMTIIII 195
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.58e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.43  E-value: 2.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWQTGQWDI-TQLTDPV-------SCLLLTAAISIKLGLV------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIaTILQDSElienikgHPLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 114 WFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPT-----LLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 189 WMTIIIIYNPK------LTLLNFYL--YALMTATVFLTF----NSMKVLNLSMLMTSWTKAPSLSTILLLTLLSLAGLPP 256
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1607199624 257 LTGFLPK 263
Cdd:PRK12649  396 LNGFLSK 402
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-270 5.03e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 38.23  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  15 LGTTITISSNHWVM---AWTGLEINTLAILPLISKSHHPraieaATKYFLVQAAASALVLFSSMTNAWQTGQWDITQLTD 91
Cdd:PRK06459   83 LGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRP-----AFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  92 PVSCLLLTAAISIKLGLVPFHF--WFPEVLQGSPLTVGLVLSTIMK----FPPITLLFMTSQS-LNPTLLTTMAI--MSA 162
Cdd:PRK06459  158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpIGYFGLTILAIgaFSI 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 163 ALGGWMGLNQTQIRKIMAFSSISHLGWM-----TIIIIYNPKLTLLNFYLYALMT-------ATVFLTFNSMKVLNLSML 230
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvAKTGLFLSSGLQEKQSIT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1607199624 231 MTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459  318 YSKKIRNRWIELGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 5.22e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.09  E-value: 5.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  55 AATKYFLVQAAASALVLFSSMTNAWQTGQ--WDITQLTD---PVSC-LLLTA----AISIKLGLVPFHFWFPEVLQGSPL 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALeLLLYAgfliAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1607199624 125 TVGLVLSTIM-KFPPITLLFMTSQSLNPT------LLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLGWMTIII 194
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 6.05e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 6.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  95 CLLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLLFMTSQSLNPTLLTTMAI-----MSAALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 170 LNQTQIRKIMAFSSISHLGWMTIII-IYNPKLTLLNFYLYALMTATVFLTFNSM-----------KVLNLSMLMtswtka 237
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqdmrKMGGLISFL------ 366

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1607199624 238 PSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020  367 PLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-288 6.30e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 37.88  E-value: 6.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  96 LLLTAAISIKLGLVPFHFWFPEVLQGSPLTVGLVLSTI-MKFPPITLLFMTSQSLNPTL-----LTTMAIMSAALGGWMG 169
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 170 LNQTQIRKIMAFSSISHLG--------WMTIIIIYNPKLTLLNFY--LYALMTATVFLT---------FNSMKVLNLSML 230
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSvlflgagsvWFRTGHRDIEKL 343

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1607199624 231 MTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPAAMAISLLSLL 288
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLL 401
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 7.64e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 37.82  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624  82 GQWDITQLTDPVSCLLLTAAISI----KLGLVPFHFWFPEVLQGSPLTVGLVLSTIMKFPPITLL-----FMTSQSLNPT 152
Cdd:MTH00207  165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607199624 153 LLTTMAIMSAALGGWMGLNQTQIRKIMAFSSISHLG-WMTIIIIYNPKLTLLNFYLYALMTATVFLTFNSMKVL-----N 226
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHShhhsqD 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1607199624 227 LSMLMTSWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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