NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1604180784]
View 

Chain B, Ubiquitin carboxyl-terminal hydrolase 25

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10119285)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-501 1.31e-107

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 321.43  E-value: 1.31e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFnllefrrlvlnykppsnaqdlprnqkehrnlpfmrelrylfallvgtkrkyvdpsraveil 95
Cdd:cd02665     1 GLKNVGNTCWFSAVIQSLF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 kdafksndSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNG 175
Cdd:cd02665    20 --------SQQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVLEGKPFCNCETFGQYPLQVNG 91
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 176 FKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQalGRPEKIHNKLEFPQvlyldrymhrnr 255
Cdd:cd02665    92 YGNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQ------------ 157
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 256 eitrikreEIKrlkdyltvlqqrlerylsygsgpkrfplvdvlqyalefasskpvctspvddidassppsgsipsqtlps 335
Cdd:cd02665   158 --------IIQ--------------------------------------------------------------------- 160
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 336 tteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpaprhiteeelsvlesclhrwrteiendtrdlqes 415
Cdd:cd02665       --------------------------------------------------------------------------------
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 416 isrihrtielmysdksmiQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASA 495
Cdd:cd02665   161 ------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSA 222

                  ....*.
gi 1604180784 496 YCLMYI 501
Cdd:cd02665   223 YCLMYI 228
 
Name Accession Description Interval E-value
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-501 1.31e-107

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 321.43  E-value: 1.31e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFnllefrrlvlnykppsnaqdlprnqkehrnlpfmrelrylfallvgtkrkyvdpsraveil 95
Cdd:cd02665     1 GLKNVGNTCWFSAVIQSLF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 kdafksndSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNG 175
Cdd:cd02665    20 --------SQQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVLEGKPFCNCETFGQYPLQVNG 91
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 176 FKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQalGRPEKIHNKLEFPQvlyldrymhrnr 255
Cdd:cd02665    92 YGNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQ------------ 157
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 256 eitrikreEIKrlkdyltvlqqrlerylsygsgpkrfplvdvlqyalefasskpvctspvddidassppsgsipsqtlps 335
Cdd:cd02665   158 --------IIQ--------------------------------------------------------------------- 160
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 336 tteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpaprhiteeelsvlesclhrwrteiendtrdlqes 415
Cdd:cd02665       --------------------------------------------------------------------------------
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 416 isrihrtielmysdksmiQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASA 495
Cdd:cd02665   161 ------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSA 222

                  ....*.
gi 1604180784 496 YCLMYI 501
Cdd:cd02665   223 YCLMYI 228
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
15-271 6.88e-31

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 122.17  E-value: 6.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  15 VGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSnaqdlpRNQKEHRNLPFMRELRYLF-ALLVGTKRKYVDPSRAVE 93
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLS------EDSRYNKDINLLCALRDLFkALQKNSKSSSVSPKMFKK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  94 ILKDAFKS-NDSQQQDVSEFTHKLLDWLEDAFQMKAEEEtdeekPKNPMVELFYGRF------LAVGVlEGKKFEnTEMF 166
Cdd:pfam00443  75 SLGKLNPDfSGYKQQDAQEFLLFLLDGLHEDLNGNHSTE-----NESLITDLFRGQLksrlkcLSCGE-VSETFE-PFSD 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 167 GQYPLQVNG----FKDLHECLEAAMIE---GEIESLHSENSGKSGQ---EHWFTELPPVLTFELSRFEFNQAlgRPEKIH 236
Cdd:pfam00443 148 LSLPIPGDSaelkTASLQICFLQFSKLeelDDEEKYYCDKCGCKQDaikQLKISRLPPVLIIHLKRFSYNRS--TWEKLN 225
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1604180784 237 NKLEFPQVLYLDRYMhrnreiTRIKREEIKRLKDY 271
Cdd:pfam00443 226 TEVEFPLELDLSRYL------AEELKPKTNNLQDY 254
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
3-253 1.64e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 67.20  E-value: 1.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784    3 NPYDRKRQdKAPVGLKNVGNTCWFSAVIQSLFNLLEFRRLVlnYKPPSNAQDlPRN------QKEHRNLPFMRElrylfa 76
Cdd:COG5077    183 LNYNSKKE-TGYVGLRNQGATCYMNSLLQSLFFIAKFRKDV--YGIPTDHPR-GRDsvalalQRLFYNLQTGEE------ 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784   77 llvgtkrkyvdPSRAVEILKD-AFKSNDS-QQQDVSEFTHKLLDWLEDafQMKaeeetdEEKPKNPMVELFYGRFLAVGV 154
Cdd:COG5077    253 -----------PVDTTELTRSfGWDSDDSfMQHDIQEFNRVLQDNLEK--SMR------GTVVENALNGIFVGKMKSYIK 313
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  155 LEGKKFEN--TEMFGQYPLQVNGFKDLHECLEAAMiegEIESLHSENSgKSGQEH---------WFTELPPVLTFELSRF 223
Cdd:COG5077    314 CVNVNYESarVEDFWDIQLNVKGMKNLQESFRRYI---QVETLDGDNR-YNAEKHglqdakkgvIFESLPPVLHLQLKRF 389
                          250       260       270
                   ....*....|....*....|....*....|
gi 1604180784  224 EFNQALGRPEKIHNKLEFPQVLYLDRYMHR 253
Cdd:COG5077    390 EYDFERDMMVKINDRYEFPLEIDLLPFLDR 419
 
Name Accession Description Interval E-value
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-501 1.31e-107

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 321.43  E-value: 1.31e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFnllefrrlvlnykppsnaqdlprnqkehrnlpfmrelrylfallvgtkrkyvdpsraveil 95
Cdd:cd02665     1 GLKNVGNTCWFSAVIQSLF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 kdafksndSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNG 175
Cdd:cd02665    20 --------SQQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVLEGKPFCNCETFGQYPLQVNG 91
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 176 FKDLHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFNQalGRPEKIHNKLEFPQvlyldrymhrnr 255
Cdd:cd02665    92 YGNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQ------------ 157
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 256 eitrikreEIKrlkdyltvlqqrlerylsygsgpkrfplvdvlqyalefasskpvctspvddidassppsgsipsqtlps 335
Cdd:cd02665   158 --------IIQ--------------------------------------------------------------------- 160
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 336 tteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpaprhiteeelsvlesclhrwrteiendtrdlqes 415
Cdd:cd02665       --------------------------------------------------------------------------------
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 416 isrihrtielmysdksmiQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASA 495
Cdd:cd02665   161 ------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSA 222

                  ....*.
gi 1604180784 496 YCLMYI 501
Cdd:cd02665   223 YCLMYI 228
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
15-271 6.88e-31

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 122.17  E-value: 6.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  15 VGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSnaqdlpRNQKEHRNLPFMRELRYLF-ALLVGTKRKYVDPSRAVE 93
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLS------EDSRYNKDINLLCALRDLFkALQKNSKSSSVSPKMFKK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  94 ILKDAFKS-NDSQQQDVSEFTHKLLDWLEDAFQMKAEEEtdeekPKNPMVELFYGRF------LAVGVlEGKKFEnTEMF 166
Cdd:pfam00443  75 SLGKLNPDfSGYKQQDAQEFLLFLLDGLHEDLNGNHSTE-----NESLITDLFRGQLksrlkcLSCGE-VSETFE-PFSD 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 167 GQYPLQVNG----FKDLHECLEAAMIE---GEIESLHSENSGKSGQ---EHWFTELPPVLTFELSRFEFNQAlgRPEKIH 236
Cdd:pfam00443 148 LSLPIPGDSaelkTASLQICFLQFSKLeelDDEEKYYCDKCGCKQDaikQLKISRLPPVLIIHLKRFSYNRS--TWEKLN 225
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1604180784 237 NKLEFPQVLYLDRYMhrnreiTRIKREEIKRLKDY 271
Cdd:pfam00443 226 TEVEFPLELDLSRYL------AEELKPKTNNLQDY 254
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
16-501 2.41e-30

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 119.12  E-value: 2.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFnllefrrlvlnykppsnaqdlprnqkehrnlpfmrelrylfallvgtkrkyvdpsraveil 95
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 kdafksndSQQQDVSEFTHKLLDWLEDAFQMKAEEETDEEKPKNPMVELFYGRFLAVGVLEGKKFENT----EMFGQYPL 171
Cdd:cd02257    20 --------SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVstepELFLSLPL 91
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 172 QVNGF--KDLHECLEAAMIEGEIE---SLHSENSGKSG--QEHWFTELPPVLTFELSRFEFNQAlGRPEKIHNKLEFPQV 244
Cdd:cd02257    92 PVKGLpqVSLEDCLEKFFKEEILEgdnCYKCEKKKKQEatKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLE 170
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 245 LYLDRYMhrnreitrikreeikrlkdyltvlqqrlerylsygsgpkrfplvdvlqyalefasskpvctspvddidasspp 324
Cdd:cd02257   171 LDLSPYL------------------------------------------------------------------------- 177
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 325 sgsipsqtlpstteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpaprhiteeelsvlesclhrwrte 404
Cdd:cd02257       --------------------------------------------------------------------------------
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 405 iendtrdlqesisrihrTIELMYSDKSMIQVPYRLHAVLVHEGQ-ANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELV 483
Cdd:cd02257   178 -----------------SEGEKDSDSDNGSYKYELVAVVVHSGTsADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVL 240
                         490
                  ....*....|....*...
gi 1604180784 484 RDsfgGYRNASAYCLMYI 501
Cdd:cd02257   241 EF---GSLSSSAYILFYE 255
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-256 5.70e-27

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 111.36  E-value: 5.70e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLLEFRRLVlnYKPPSNAQDLPRNQKE---HRNLPFMRELRYLFALLVGTKRKYVDPSRAV 92
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAV--YECNSTEDAELKNMPPdkpHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  93 eilkDAFKSNDSQQQDVSEFTHKLLDWLEDAFQmkaeeETDEEKPKNPMVELFYGRFLAVGVLE--GKKFENTEMFGQYP 170
Cdd:cd02668    79 ----KALGLDTGQQQDAQEFSKLFLSLLEAKLS-----KSKNPDLKNIVQDLFRGEYSYVTQCSkcGRESSLPSKFYELE 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 171 LQVNGFKDLHECLEAAMIEgeiESLHSEN--SGKSGQEH-------WFTELPPVLTFELSRFEFNQALGRPEKIHNKLEF 241
Cdd:cd02668   150 LQLKGHKTLEECIDEFLKE---EQLTGDNqyFCESCNSKtdatrriRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226
                         250
                  ....*....|....*
gi 1604180784 242 PQVLYLDRYMHRNRE 256
Cdd:cd02668   227 PEILDMGEYLAESDE 241
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
15-502 1.48e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 101.57  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  15 VGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQDlprnqKEHRNLPFMRelryLFALLVGTKRKYVDPSRAVEI 94
Cdd:cd02659     3 VGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDD-----NKSVPLALQR----LFLFLQLSESPVKTTELTDKT 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  95 LKDAFKSNDS-QQQDVSEFTHKLLDWLEDafQMKAEEEtdeekpKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQV 173
Cdd:cd02659    74 RSFGWDSLNTfEQHDVQEFFRVLFDKLEE--KLKGTGQ------EGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQV 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 174 N--GFKDLHECLEAaMIEGEI----ESLHSENSGKSGQEH---WFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPQV 244
Cdd:cd02659   146 AvkGKKNLEESLDA-YVQGETlegdNKYFCEKCGKKVDAEkgvCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLE 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 245 LYLDRYMHRNREitriKREEIKRLKDYltvlqqrlERYLsygsgpkrfplvdvlqyalefasskpvctspvddidasspp 324
Cdd:cd02659   225 LDMEPYTEKGLA----KKEGDSEKKDS--------ESYI----------------------------------------- 251
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 325 sgsipsqtlpstteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpaprhiteeelsvlesclhrwrte 404
Cdd:cd02659       --------------------------------------------------------------------------------
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 405 iendtrdlqesisrihrtielmysdksmiqvpYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVR 484
Cdd:cd02659   252 --------------------------------YELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEE 299
                         490       500       510
                  ....*....|....*....|....*....|..
gi 1604180784 485 DSFGGY--------------RNASAYCLMYIN 502
Cdd:cd02659   300 ECFGGEetqktydsgprafkRTTNAYMLFYER 331
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
14-501 1.91e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 92.94  E-value: 1.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  14 PVGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPP--SNAQDLP----------RNQKEHRNLPFMRELRYLFALLVGT 81
Cdd:cd02666     1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESkaELASDYPterriggrevSRSELQRSNQFVYELRSLFNDLIHS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  82 KRKYVDPSRAVEILkdAFKsndsqQQDVSEFTHKLLdwledaFQMKAEEETDEEKPKNPMVELFygrflavgvlegkkfe 161
Cdd:cd02666    81 NTRSVTPSKELAYL--ALR-----QQDVTECIDNVL------FQLEVALEPISNAFAGPDTEDD---------------- 131
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 162 ntemfgqyPLQVNGFKDLHECLEAAMIEGEIESlhSENSGKSGQEHWFTELPPVltfelsrfefnqalGRPEKIHNKLEF 241
Cdd:cd02666   132 --------KEQSDLIKRLFSGKTKQQLVPESMG--NQPSVRTKTERFLSLLVDV--------------GKKGREIVVLLE 187
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 242 PQVLY--LDRYMHRnreitrikreeikrlkDYLTVLQQRLErylsygsgpkrfplvdvlqyalEFASSKPVCTSPVDDID 319
Cdd:cd02666   188 PKDLYdaLDRYFDY----------------DSLTKLPQRSQ----------------------VQAQLAQPLQRELISMD 229
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 320 assppsgsipsqtlpsTTEQqgalsselpstsPSSVAAISSrsvihkpftqsrippdlpmhpAPRHITEEELSVLEsclh 399
Cdd:cd02666   230 ----------------RYEL------------PSSIDDIDE---------------------LIREAIQSESSLVR---- 256
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 400 rwrtEIENDTRDLQESISRIhrtielmYSDksMIQVPYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSW 479
Cdd:cd02666   257 ----QAQNELAELKHEIEKQ-------FDD--LKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323
                         490       500
                  ....*....|....*....|..
gi 1604180784 480 EELVRDSFGGyrNASAYCLMYI 501
Cdd:cd02666   324 SEVFLFTLGN--TATPYFLVYV 343
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-247 2.06e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 71.37  E-value: 2.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQDlprnqkehrnLPFMRELRYLFALLVGTKRKYVDPSRAV--E 93
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDS----------QSVMKKLQLLQAHLMHTQRRAEAPPDYFleA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  94 ILKDAFksNDSQQQDVSEFTHKLLDWLedafqmkaeeetdeekpkNPMVELFYGRFLAVGVL---EGKKFENTEMFGQYP 170
Cdd:cd02664    71 SRPPWF--TPGSQQDCSEYLRYLLDRL------------------HTLIEKMFGGKLSTTIRclnCNSTSARTERFRDLD 130
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 171 LQVNGFKDLHECLEAAmiegeiESLHSEN-----SGKSGQ----EHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEF 241
Cdd:cd02664   131 LSFPSVQDLLNYFLSP------EKLTGDNqyyceKCASLQdaekEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSI 204

                  ....*.
gi 1604180784 242 PQVLYL 247
Cdd:cd02664   205 NEVLSL 210
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-245 1.06e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.82  E-value: 1.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPpsnaqdlPRNQKEHRNLPFMRELRYLFALLvGTKRKYVDPSRAVEIL 95
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNP-------ARRGANQSSDNLTNALRDLFDTM-DKKQEPVPPIEFLQLL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 KDAF-----KSNDSQ--QQDVSE--------FTHKLL------DWLEDAFQMKAEE---ETDEEKPKNPMVELFYgrFLa 151
Cdd:cd02657    73 RMAFpqfaeKQNQGGyaQQDAEEcwsqllsvLSQKLPgagskgSFIDQLFGIELETkmkCTESPDEEEVSTESEY--KL- 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 152 vgvlegkkfeNTEMFGQypLQVNGfkdLHECLEAAMiEGEIEsLHSENSGKSGQ---EHWFTELPPVLTFELSRFEFNQA 228
Cdd:cd02657   150 ----------QCHISIT--TEVNY---LQDGLKKGL-EEEIE-KHSPTLGRDAIytkTSRISRLPKYLTVQFVRFFWKRD 212
                         250
                  ....*....|....*..
gi 1604180784 229 LGRPEKIHNKLEFPQVL 245
Cdd:cd02657   213 IQKKAKILRKVKFPFEL 229
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
3-253 1.64e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 67.20  E-value: 1.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784    3 NPYDRKRQdKAPVGLKNVGNTCWFSAVIQSLFNLLEFRRLVlnYKPPSNAQDlPRN------QKEHRNLPFMRElrylfa 76
Cdd:COG5077    183 LNYNSKKE-TGYVGLRNQGATCYMNSLLQSLFFIAKFRKDV--YGIPTDHPR-GRDsvalalQRLFYNLQTGEE------ 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784   77 llvgtkrkyvdPSRAVEILKD-AFKSNDS-QQQDVSEFTHKLLDWLEDafQMKaeeetdEEKPKNPMVELFYGRFLAVGV 154
Cdd:COG5077    253 -----------PVDTTELTRSfGWDSDDSfMQHDIQEFNRVLQDNLEK--SMR------GTVVENALNGIFVGKMKSYIK 313
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  155 LEGKKFEN--TEMFGQYPLQVNGFKDLHECLEAAMiegEIESLHSENSgKSGQEH---------WFTELPPVLTFELSRF 223
Cdd:COG5077    314 CVNVNYESarVEDFWDIQLNVKGMKNLQESFRRYI---QVETLDGDNR-YNAEKHglqdakkgvIFESLPPVLHLQLKRF 389
                          250       260       270
                   ....*....|....*....|....*....|
gi 1604180784  224 EFNQALGRPEKIHNKLEFPQVLYLDRYMHR 253
Cdd:COG5077    390 EYDFERDMMVKINDRYEFPLEIDLLPFLDR 419
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
437-552 1.52e-10

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 64.12  E-value: 1.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  437 YRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGG--------------YRNASAYCLMYI- 501
Cdd:COG5077    431 YVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGdhpykdkirdhsgiKRFMSAYMLVYLr 510
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1604180784  502 NDKAQFLIQEefnketgqplVGIETLPPDLRDFVEEDNQRFEKELEEWDAQ 552
Cdd:COG5077    511 KSMLDDLLNP----------VAAVDIPPHVEEVLSEEIDKTEVRCKEIDEI 551
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
14-251 2.60e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 61.52  E-value: 2.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  14 PVGLKNVGNTCWFSAVIQSlfnllefrrlvLNYKPPSnAQDLPR----NQKEHRNLPFMRELRYLFALLVGTKRKYVDPS 89
Cdd:cd02661     1 GAGLQNLGNTCFLNSVLQC-----------LTHTPPL-ANYLLSrehsKDCCNEGFCMMCALEAHVERALASSGPGSAPR 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  90 RAVEILKdAFKSN--DSQQQDVSEFTHKLLDWLEDA--FQMKAEEETDEE-KPKNPMVELFYGRFLA-VGVLEGKKFENT 163
Cdd:cd02661    69 IFSSNLK-QISKHfrIGRQEDAHEFLRYLLDAMQKAclDRFKKLKAVDPSsQETTLVQQIFGGYLRSqVKCLNCKHVSNT 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 164 -EMFGQYPLQVNGFKDLHECLEAAMiegEIESLHSEN-------SGKSGQEHWFT--ELPPVLTFELSRFEFNQAlgrpE 233
Cdd:cd02661   148 yDPFLDLSLDIKGADSLEDALEQFT---KPEQLDGENkykcercKKKVKASKQLTihRAPNVLTIHLKRFSNFRG----G 220
                         250
                  ....*....|....*...
gi 1604180784 234 KIHNKLEFPQVLYLDRYM 251
Cdd:cd02661   221 KINKQISFPETLDLSPYM 238
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-268 3.86e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 60.86  E-value: 3.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFnLLEFRRLVLNYKPpsnaqdlprnqkehrnlpfmrelRYLFAllvgtkrkyvdpsravEIL 95
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLS-QTPALRELLSETP-----------------------KELFS----------------QVC 40
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 KDAFKSNDSQQQDVSEFTHKLLDWLedafqmkaeeetdeekpkNPMVELFYGRFLAVGV--LEGKKFENT-EMFGQYPLQ 172
Cdd:cd02667    41 RKAPQFKGYQQQDSHELLRYLLDGL------------------RTFIDSIFGGELTSTImcESCGTVSLVyEPFLDLSLP 102
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 173 V----NGFKDLHECL----EAAMIEGEIEsLHSENSGKSGQEHWFTELPPVLTFELSRFeFNQALGRPEKIHNKLEFPQV 244
Cdd:cd02667   103 RsdeiKSECSIESCLkqftEVEILEGNNK-FACENCTKAKKQYLISKLPPVLVIHLKRF-QQPRSANLRKVSRHVSFPEI 180
                         250       260
                  ....*....|....*....|....
gi 1604180784 245 LYLDRYMHRNREITRIKREEIKRL 268
Cdd:cd02667   181 LDLAPFCDPKCNSSEDKSSVLYRL 204
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
16-240 4.85e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 57.50  E-value: 4.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSL-FNLLEFRRLVLnyKPPSNAQDLprnQKEHRNlPF----MRELRYLFALLVGTKRkyvdpsr 90
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILaLYLPKLDELLD--DLSKELKVL---KNVIRK-PEpdlnQEEALKLFTALWSSKE------- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  91 aveiLKDAFKSNDSQQQDVSEFTHKLLDWLEdaFQMKAEEETDEEKPKNPMVELFYGRFLAVGV--LEGKKFENTEMFGQ 168
Cdd:COG5533    68 ----HKVGWIPPMGSQEDAHELLGKLLDELK--LDLVNSFTIRIFKTTKDKKKTSTGDWFDIIIelPDQTWVNNLKTLQE 141
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1604180784 169 YPLQVNGFKDlheclEAAMI-EGEIESLHSENsgKSGQEHWFTELPPVLTFELSRFEFNqalGRPEKIHNKLE 240
Cdd:COG5533   142 FIDNMEELVD-----DETGVkAKENEELEVQA--KQEYEVSFVKLPKILTIQLKRFANL---GGNQKIDTEVD 204
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-501 5.53e-09

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 56.53  E-value: 5.53e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1604180784 437 YRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVrdsfggyrNASAYCLMYI 501
Cdd:cd02674   174 YDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVV--------SSSAYILFYE 230
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-501 9.25e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 53.92  E-value: 9.25e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1604180784 437 YRLHAVLVHEGQANAGHYWAYIFDHRESrWMKYNDIAVTKSSWEELVRdsfggyrnASAYCLMYI 501
Cdd:cd02660   273 YDLFAVVVHKGTLDTGHYTAYCRQGDGQ-WFKFDDAMITRVSEEEVLK--------SQAYLLFYH 328
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-245 2.50e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 52.71  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQ-DLPRNQKEHRnlpfMRELRYlfALLVGtkrKYVDPSRAVE- 93
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDvVDPANDLNCQ----LIKLAD--GLLSG---RYSKPASLKSe 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  94 -------ILKDAFKS---------NDSQQQDVSEFTHKLLDWLEDAFQMKAEeetdeekpKNPmVELFygRFLAVGVLEG 157
Cdd:cd02658    72 ndpyqvgIKPSMFKAligkghpefSTMRQQDALEFLLHLIDKLDRESFKNLG--------LNP-NDLF--KFMIEDRLEC 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 158 KKFE--NTEMFGQYPLQVNGFKD----------------LHECLEAAMIEGEIESLHSENSGKSG--QEHWFTELPPVLT 217
Cdd:cd02658   141 LSCKkvKYTSELSEILSLPVPKDeatekeegelvyepvpLEDCLKAYFAPETIEDFCSTCKEKTTatKTTGFKTFPDYLV 220
                         250       260
                  ....*....|....*....|....*...
gi 1604180784 218 FELSRFEFNQAlGRPEKIHNKLEFPQVL 245
Cdd:cd02658   221 INMKRFQLLEN-WVPKKLDVPIDVPEEL 247
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-248 1.71e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 50.06  E-value: 1.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLLEFRRLVLNykppsnaqdlprnQKEHRNLPFMR-------ELRYLFALLVGTKRKyvDP 88
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFLS-------------DRHSCTCLSCSpnsclscAMDEIFQEFYYSGDR--SP 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  89 SRAVEILKDAFKSNDS----QQQDVSEFTHKLLDwledafQMKAEEETDEEKPKNPMV------ELFYGRFLAVGVLEGK 158
Cdd:cd02660    67 YGPINLLYLSWKHSRNlagySQQDAHEFFQFLLD------QLHTHYGGDKNEANDESHcnciihQTFSGSLQSSVTCQRC 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 159 KFENT-----------------EMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSENSG-KSGQEHW----FTELPPVL 216
Cdd:cd02660   141 GGVSTtvdpfldlsldipnkstPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGcGSTQEATkqlsIKKLPPVL 220
                         250       260       270
                  ....*....|....*....|....*....|..
gi 1604180784 217 TFELSRFEFNQAlGRPEKIHNKLEFPqvLYLD 248
Cdd:cd02660   221 CFQLKRFEHSLN-KTSRKIDTYVQFP--LELN 249
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
437-481 1.71e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.80  E-value: 1.71e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1604180784 437 YRLHAVLVHEGQANAGHYWAYIfdHRESRWMKYNDIAVTKSSWEE 481
Cdd:COG5533   225 YDLVGFVLHQGSLEGGHYIAYV--KKGGKWEKANDSDVTPVSEEE 267
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-247 2.34e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 49.62  E-value: 2.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNLlefrrlvlnykppsnaqdlprnqkehrNLpfMRELRYLFALLVGTKRKY--VDPSRAVE 93
Cdd:cd02663     1 GLENFGNTCYCNSVLQALYFE---------------------------NL--LTCLKDLFESISEQKKRTgvISPKKFIT 51
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  94 ILKDAFKS-NDSQQQDVSEFTHKLL----DWLEDAFQMKAEEETDEEKPKNPMV-----ELFYG------RFLAVGVLEG 157
Cdd:cd02663    52 RLKRENELfDNYMHQDAHEFLNFLLneiaEILDAERKAEKANRKLNNNNNAEPQptwvhEIFQGiltnetRCLTCETVSS 131
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 158 KKfentEMFGQYPLQVNGFKDLHECLEAAmieGEIESLHSEN-----SGKSGQEHW----FTELPPVLTFELSRFEFNQA 228
Cdd:cd02663   132 RD----ETFLDLSIDVEQNTSITSCLRQF---SATETLCGRNkfycdECCSLQEAEkrmkIKKLPKILALHLKRFKYDEQ 204
                         250
                  ....*....|....*....
gi 1604180784 229 LGRPEKIHNKLEFPQVLYL 247
Cdd:cd02663   205 LNRYIKLFYRVVFPLELRL 223
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-500 5.01e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 48.48  E-value: 5.01e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1604180784 437 YRLHAVLVHEGQ-ANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSfGGYRNASAYCLMY 500
Cdd:cd02657   241 YELVAVITHQGRsADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLS-GGGDWHIAYILLY 304
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
428-501 5.22e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 45.34  E-value: 5.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1604180784 428 SDKSMIQVPYRLHAVLVHEG-QANAGHYWAYIFDHREsRWMKYNDIAVTKSSWEELVrdsfggyrNASAYCLMYI 501
Cdd:cd02661   239 SQPNDGPLKYKLYAVLVHSGfSPHSGHYYCYVKSSNG-KWYNMDDSKVSPVSIETVL--------SQKAYILFYI 304
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
105-246 2.95e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 42.74  E-value: 2.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 105 QQQDVSEFTHKLLDWLEDafqmkaeeetdeeKPKNPmvelFYGRF------LAVGVLEGKKFENtemFGQYPLQVNGFKD 178
Cdd:cd02662    33 EQQDAHELFQVLLETLEQ-------------LLKFP----FDGLLasrivcLQCGESSKVRYES---FTMLSLPVPNQSS 92
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1604180784 179 LHECLEAAMIEGEIESLHSENSGKSGQEHWFTELPPVLTFELSRFEFN---QALGRPEKIHNKLEFPQVLY 246
Cdd:cd02662    93 GSGTTLEHCLDDFLSTEIIDDYKCDRCQTVIVRLPQILCIHLSRSVFDgrgTSTKNSCKVSFPERLPKVLY 163
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
424-501 3.39e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 43.72  E-value: 3.39e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1604180784 424 ELMYSDKSMIqvpYRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRdsfggyrnASAYCLMYI 501
Cdd:COG5560   754 EYMVDDPRLI---YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT--------SSAYVLFYR 820
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
16-242 1.10e-03

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 40.73  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  16 GLKNVGNTCWFSAVIQSLFNllefrrlvlnykppsnaqdlprnqkehrnlpfmrelrylfallvgtkrkyvdpsraveil 95
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784  96 kdafksndsQQQDVSEFTHKLLDWLE----DAF--QMKAEEETDEEKPKNPMVELFYgrFLAVGVLEGKKFENTEMfgqy 169
Cdd:cd02674    21 ---------DQQDAQEFLLFLLDGLHsiivDLFqgQLKSRLTCLTCGKTSTTFEPFT--YLSLPIPSGSGDAPKVT---- 85
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 170 plqvngfkdLHECLEaamiegeiESLHSENSGKSGQEHW--------------FTELPPVLTFELSRFEFNQalGRPEKI 235
Cdd:cd02674    86 ---------LEDCLR--------LFTKEETLDGDNAWKCpkckkkrkatkkltISRLPKVLIIHLKRFSFSR--GSTRKL 146

                  ....*..
gi 1604180784 236 HNKLEFP 242
Cdd:cd02674   147 TTPVTFP 153
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-500 3.45e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 39.68  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604180784 437 YRLHAVLVHEGQANAGHYWAYIFDHR---------------------ESRWMKYNDIAVTKSSWEELVRdsfggyrnASA 495
Cdd:cd02667   202 YRLYGVVEHSGTMRSGHYVAYVKVRPpqqrlsdltkskpaadeagpgSGQWYYISDSDVREVSLEEVLK--------SEA 273

                  ....*
gi 1604180784 496 YCLMY 500
Cdd:cd02667   274 YLLFY 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH