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Conserved domains on  [gi|159902491|gb|ABX10845|]
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cytochrome b, partial (mitochondrion) [Calomyscus baluchi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-134 8.34e-103

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.09  E-value: 8.34e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-134 8.34e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.09  E-value: 8.34e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 6.34e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 170.63  E-value: 6.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 159902491  89 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.80e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 153.69  E-value: 1.80e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   18 FIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 159902491   98 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-134 2.71e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 2.71e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 159902491  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLP 134
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-134 8.34e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.09  E-value: 8.34e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00131
cytochrome b; Provisional
 1-134 2.39e-87

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 258.81  E-value: 2.39e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00074
cytochrome b; Provisional
 1-134 2.67e-87

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 258.84  E-value: 2.67e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00119
cytochrome b; Provisional
 1-134 1.20e-86

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 257.14  E-value: 1.20e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 4-134 8.32e-83

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 246.75  E-value: 8.32e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00156
cytochrome b; Provisional
 11-134 1.65e-80

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 240.84  E-value: 1.65e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 159902491  91 FICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00034
cytochrome b; Validated
 4-134 1.51e-76

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 231.52  E-value: 1.51e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-134 7.52e-76

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 229.41  E-value: 7.52e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159902491  81 YLHANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 4-134 6.67e-74

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 224.56  E-value: 6.67e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 4-134 5.29e-64

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 199.38  E-value: 5.29e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 4-134 9.79e-63

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 196.08  E-value: 9.79e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 4-134 5.00e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 191.84  E-value: 5.00e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   4 IRPTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 159902491  84 ANGASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 6.34e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 170.63  E-value: 6.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 159902491  89 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.80e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 153.69  E-value: 1.80e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   18 FIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 159902491   98 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 19-134 1.29e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.02  E-value: 1.29e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  19 IDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 98
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 159902491  99 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-134 2.71e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 2.71e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491   1 MTNIRPTHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 159902491  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLP 134
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 12-134 6.43e-38

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 131.22  E-value: 6.43e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  12 KIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 159902491  92 ICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 10-134 1.77e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 101.21  E-value: 1.77e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  10 LMKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 159902491  90 FFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLP 134
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 33-134 2.47e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 85.15  E-value: 2.47e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  33 FGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFME- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 159902491 112 -TWNIGIILLFAVMATAFMGYVLP 134
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 24-134 7.55e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 67.82  E-value: 7.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159902491  24 PSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|...
gi 159902491 104 YGSYTFME--TWNIGIILLFAVMATAFMGYVLP 134
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-134 5.84e-08

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 48.78  E-value: 5.84e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 159902491   88 SMFFICLFLHVGRGIYYGSYTFME--TWNIGIILLFAVMATAFMGYVLP 134
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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