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Conserved domains on  [gi|1597952353|ref|WP_133607011|]
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MULTISPECIES: flagellar transcriptional regulator FlhC [Aquabacterium]

Protein Classification

flagellar transcriptional regulator FlhC( domain architecture ID 10014065)

flagellar transcriptional regulator FlhC functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-176 6.20e-121

flagellar transcriptional regulator FlhC;


:

Pssm-ID: 237181  Cd Length: 187  Bit Score: 338.84  E-value: 6.20e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   1 MRTKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVH 80
Cdd:PRK12722    1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  81 EYLNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLC 160
Cdd:PRK12722   81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                         170
                  ....*....|....*.
gi 1597952353 161 NPPARAGKGKAAGSLQ 176
Cdd:PRK12722  161 QPPSRAGKTRKLSAAA 176
 
Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-176 6.20e-121

flagellar transcriptional regulator FlhC;


Pssm-ID: 237181  Cd Length: 187  Bit Score: 338.84  E-value: 6.20e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   1 MRTKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVH 80
Cdd:PRK12722    1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  81 EYLNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLC 160
Cdd:PRK12722   81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                         170
                  ....*....|....*.
gi 1597952353 161 NPPARAGKGKAAGSLQ 176
Cdd:PRK12722  161 QPPSRAGKTRKLSAAA 176
FlhC pfam05280
Flagellar transcriptional activator (FlhC); This family consists of several bacterial ...
 3-172 5.69e-110

Flagellar transcriptional activator (FlhC); This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.


Pssm-ID: 428407  Cd Length: 171  Bit Score: 310.68  E-value: 5.69e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   3 TKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVHEY 82
Cdd:pfam05280   1 NKSVLQEARQIQLAIELIELGARLQVLESETSLSRERLLRLYKEVRGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYRF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  83 LNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLCNP 162
Cdd:pfam05280  81 LIRHGGCPGIEALVKAYRLYLEQIEADGEEPVLSFTRAWTLVRFFESGMLQLTSCSRCGGEFVTHAHDPTHNFVCGLCQP 160

                         170
                  ....*....|
gi 1597952353 163 PARAGKGKAA 172
Cdd:pfam05280 161 PSRAGKTRKA 170
 
Name Accession Description Interval E-value
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
1-176 6.20e-121

flagellar transcriptional regulator FlhC;


Pssm-ID: 237181  Cd Length: 187  Bit Score: 338.84  E-value: 6.20e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   1 MRTKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVH 80
Cdd:PRK12722    1 MSEKSVVQEARDIQLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  81 EYLNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLC 160
Cdd:PRK12722   81 QFLLKTGGCSGIEAVIKAYRLYLEQCPQAEEEPLLSLTRAWTLVRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCGLC 160

                         170
                  ....*....|....*.
gi 1597952353 161 NPPARAGKGKAAGSLQ 176
Cdd:PRK12722  161 QPPSRAGKTRKLSAAA 176
FlhC pfam05280
Flagellar transcriptional activator (FlhC); This family consists of several bacterial ...
 3-172 5.69e-110

Flagellar transcriptional activator (FlhC); This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.


Pssm-ID: 428407  Cd Length: 171  Bit Score: 310.68  E-value: 5.69e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   3 TKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVHEY 82
Cdd:pfam05280   1 NKSVLQEARQIQLAIELIELGARLQVLESETSLSRERLLRLYKEVRGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYRF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  83 LNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLCNP 162
Cdd:pfam05280  81 LIRHGGCPGIEALVKAYRLYLEQIEADGEEPVLSFTRAWTLVRFFESGMLQLTSCSRCGGEFVTHAHDPTHNFVCGLCQP 160

                         170
                  ....*....|
gi 1597952353 163 PARAGKGKAA 172
Cdd:pfam05280 161 PSRAGKTRKA 170
PRK12860 PRK12860
flagellar transcriptional regulator FlhC;
1-173 5.37e-90

flagellar transcriptional regulator FlhC;


Pssm-ID: 237237  Cd Length: 189  Bit Score: 260.84  E-value: 5.37e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353   1 MRTKSLLTEAKQIDRAVTLIHLGARLQVLESETDMSYERLLRLYKEVSGKSPSKGQLPFSTDWFMTWQPNIHASLFLNVH 80
Cdd:PRK12860    1 MLRKSLLQDAQEIRLAIELIGLGARLQVLESETTLSRDRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1597952353  81 EYLNKASEMDEIDVVIKAYQLYLEQTQSQGLEPLLSVTRAWRLVKFIDNGMLTMTKCNKCGGHFVTHPHEIARHFTCGLC 160
Cdd:PRK12860   81 RFLKNEARCSGLDALTKGYRLYLEHCCATGTEPVLDLTRAWTLVRFFDAGMLQLARCCRCGGKFVTHAHDLRHNFVCGLC 160

                         170
                  ....*....|...
gi 1597952353 161 NPPARAGKGKAAG 173
Cdd:PRK12860  161 QPPSRAGKTKKAA 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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