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Conserved domains on  [gi|1593551732|ref|YP_009563217|]
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Ycf2 (chloroplast) [Pterostyrax corymbosus]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4215.84  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNLVGSFIHVFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKSV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732   81 ILFVVAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDPKGSSNINRLIISLLYLPKGKKISESCFLNPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  161 WVLPITKKCSMPEFNWGSRWWRNWIGKKRDSRYKISNETVAGIEILFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  241 LRKRRNRINLNSGPLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTKSSFVQVTDSNQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  401 RDHLDSISNEDSEYHTLINQREIQQRKERSILWDPSFLQMERTEIESDRFPKCLSGYSSMSPLFTEREKQMINHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  481 EEFLGNPKRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDLSFVPSRRSENQEMVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  641 DSYGLDQKQFLNEVFNSRDESKKKSLLALPPIFYEENESFYRRIKKKWVRISCGNDLEDPKPKRVVFASNNIMEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQKDQIGKDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800
Cdd:CHL00206   721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  801 TERSMNRDPNAYRYKWSNGSKNFQEHLDHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKPLGFFLSKSLLFLSK 880
Cdd:CHL00206   801 TERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFLSK 880

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  881 LLFFLSNSLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKLKAFLLDDHDPSQKSKFLINGGTIS 960
Cdd:CHL00206   881 KLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTIS 960

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  961 PFLFNKIPKWMIDSFHTRNNRRKSLDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFSFYCNKR 1040
Cdd:CHL00206   961 PFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKR 1040

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120
Cdd:CHL00206  1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1121 PSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMDLIHTPCSEKDLPSEKRK 1200
Cdd:CHL00206  1121 PIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRK 1200

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280
Cdd:CHL00206  1201 KRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1281 GSDISWRILQKKL--CLPQWNLISEISSKCLHNLLLSEEMIHRKNESP--STHLRSPNVREFLYSILFLLLVAGYLVRTH 1356
Cdd:CHL00206  1281 GSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPliWTHLRSPNVREFLYSILFLLLVAGYLVRTH 1360

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1357 LLFVSRASSELQTEFEKVKSLMIPSSMVELRKLLDRYPTSEPNSFWLKNLFLVALEQLGNSLEEILGSafGGNMLLGGGS 1436
Cdd:CHL00206  1361 LLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGGGP 1438

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1437 AYGVKSIRSKKKYlniNLIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1516
Cdd:CHL00206  1439 AYGVKSIRSKKKY---LNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1517 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGFQMIEQPGAIYLRYLVDIHKKYLMNYEFNTSCLAERRISLA 1596
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLA 1595

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1597 HYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITVFLNKFLDNKPQGFL 1676
Cdd:CHL00206  1596 HYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFL 1675

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1677 iddididasddiDDSDDIDASDDIDDSDDIDRDLDTelELLTMMNALTMDTMPEIDRFYITLQFELAKAMSPCIIWIPNI 1756
Cdd:CHL00206  1676 ------------IDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNI 1741

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1757 HDLDVNESNYLSLGLLVNHLSRDCERYSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1836
Cdd:CHL00206  1742 HDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1821

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1837 FRLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1916
Cdd:CHL00206  1822 FHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1901

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1917 VAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1996
Cdd:CHL00206  1902 VAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1981

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1997 VENDSDVVHGLLEVESALVGSSRTEKDCSQFDNDRVILLRRPEPRNPLDMMQNGSCSILDQRFLYEKYESEFEEGGGEGA 2076
Cdd:CHL00206  1982 VENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGA 2061

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2077 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDWIERPNELGFPYWSRSFRGKRIISDEEDELQENDSEFLQSGTMQYQTRDRS 2156
Cdd:CHL00206  2062 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRS 2141

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2157 SKEQGLFRISQFIWDPADPLFFLFKDQLFVSVFSHRELFADEEMSKGLFTSQTDPPTSIYKGWFIKNTQEKHFELLINRQ 2236
Cdd:CHL00206  2142 SKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQ 2221

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2237 RWLRTNSLLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIEFM 2296
Cdd:CHL00206  2222 RWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4215.84  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNLVGSFIHVFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKSV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732   81 ILFVVAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDPKGSSNINRLIISLLYLPKGKKISESCFLNPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  161 WVLPITKKCSMPEFNWGSRWWRNWIGKKRDSRYKISNETVAGIEILFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  241 LRKRRNRINLNSGPLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTKSSFVQVTDSNQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  401 RDHLDSISNEDSEYHTLINQREIQQRKERSILWDPSFLQMERTEIESDRFPKCLSGYSSMSPLFTEREKQMINHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  481 EEFLGNPKRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDLSFVPSRRSENQEMVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  641 DSYGLDQKQFLNEVFNSRDESKKKSLLALPPIFYEENESFYRRIKKKWVRISCGNDLEDPKPKRVVFASNNIMEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQKDQIGKDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800
Cdd:CHL00206   721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  801 TERSMNRDPNAYRYKWSNGSKNFQEHLDHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKPLGFFLSKSLLFLSK 880
Cdd:CHL00206   801 TERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFLSK 880

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  881 LLFFLSNSLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKLKAFLLDDHDPSQKSKFLINGGTIS 960
Cdd:CHL00206   881 KLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTIS 960

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  961 PFLFNKIPKWMIDSFHTRNNRRKSLDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFSFYCNKR 1040
Cdd:CHL00206   961 PFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKR 1040

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120
Cdd:CHL00206  1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1121 PSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMDLIHTPCSEKDLPSEKRK 1200
Cdd:CHL00206  1121 PIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRK 1200

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280
Cdd:CHL00206  1201 KRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1281 GSDISWRILQKKL--CLPQWNLISEISSKCLHNLLLSEEMIHRKNESP--STHLRSPNVREFLYSILFLLLVAGYLVRTH 1356
Cdd:CHL00206  1281 GSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPliWTHLRSPNVREFLYSILFLLLVAGYLVRTH 1360

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1357 LLFVSRASSELQTEFEKVKSLMIPSSMVELRKLLDRYPTSEPNSFWLKNLFLVALEQLGNSLEEILGSafGGNMLLGGGS 1436
Cdd:CHL00206  1361 LLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGGGP 1438

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1437 AYGVKSIRSKKKYlniNLIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1516
Cdd:CHL00206  1439 AYGVKSIRSKKKY---LNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1517 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGFQMIEQPGAIYLRYLVDIHKKYLMNYEFNTSCLAERRISLA 1596
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLA 1595

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1597 HYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITVFLNKFLDNKPQGFL 1676
Cdd:CHL00206  1596 HYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFL 1675

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1677 iddididasddiDDSDDIDASDDIDDSDDIDRDLDTelELLTMMNALTMDTMPEIDRFYITLQFELAKAMSPCIIWIPNI 1756
Cdd:CHL00206  1676 ------------IDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNI 1741

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1757 HDLDVNESNYLSLGLLVNHLSRDCERYSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1836
Cdd:CHL00206  1742 HDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1821

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1837 FRLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1916
Cdd:CHL00206  1822 FHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1901

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1917 VAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1996
Cdd:CHL00206  1902 VAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1981

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1997 VENDSDVVHGLLEVESALVGSSRTEKDCSQFDNDRVILLRRPEPRNPLDMMQNGSCSILDQRFLYEKYESEFEEGGGEGA 2076
Cdd:CHL00206  1982 VENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGA 2061

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2077 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDWIERPNELGFPYWSRSFRGKRIISDEEDELQENDSEFLQSGTMQYQTRDRS 2156
Cdd:CHL00206  2062 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRS 2141

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2157 SKEQGLFRISQFIWDPADPLFFLFKDQLFVSVFSHRELFADEEMSKGLFTSQTDPPTSIYKGWFIKNTQEKHFELLINRQ 2236
Cdd:CHL00206  2142 SKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQ 2221

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2237 RWLRTNSLLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIEFM 2296
Cdd:CHL00206  2222 RWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1484 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2877.42  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNLVGSFIHVFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKSV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732   81 ILFVVAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDPKGSSNINRLIISLLYLPKGKKISESCFLNPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  161 WVLPITKKCSMPEFNWGSRWWRNWIGKKRDSRYKISNETVAGIEILFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  241 LRKRRNRINLNSGPLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTKSSFVQVTDSNQLKGSSDQS 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  401 RDHLDSISNEDSEYHTLINQREIQQRKERSILWDPSFLQMERTEIESDRFPKCLSGYSSMSPLFTEREKQMINHLLPEEI 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  481 EEFLGNPKRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDLSFVPSRRSENQEMVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  641 DSYGLDQKQFLNEVFNSRDESKKKSLLALPPIFYEENESFYRRIKKKWVRISCGNDLEDPKPKRVVFASNNIMEAVNQYR 720
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQKDQIGKDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800
Cdd:pfam05695  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  801 TERSMNRDPNAYRYKWSNGSKNFQEHLDHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKPLGFFLSKSLLFLSK 880
Cdd:pfam05695  801 TERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSK 880

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  881 LLFFLSNSLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKLKAFLLDDHDPSQKSKFLINGGTIS 960
Cdd:pfam05695  881 FLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLINGGTIS 960

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  961 PFLFNKIPKWMIDSFHTRNNRRKSLDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFSFYCNKR 1040
Cdd:pfam05695  961 PFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKR 1040

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120
Cdd:pfam05695 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1121 PSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMDLIHTPCSEKDLPSEKRK 1200
Cdd:pfam05695 1121 PIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRK 1200

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280
Cdd:pfam05695 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1281 GSDISWRILQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRKNESP--STHLRSPNVREFLYSILFLLLVAGYLVRTHLL 1358
Cdd:pfam05695 1281 GSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPliSTHLRSPNVREFFYSILFLLLVAGYLVRTHLL 1360

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1359 FVSRASSELQTEFEKVKSLMIPSSMVELRKLLDRYPTSEPNSFWLKNLFLVALEQLGNSLEEILGSAFGGNMLLGGGSAY 1438
Cdd:pfam05695 1361 FVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGGNMLLGGGPAY 1440

                         1450      1460      1470      1480
                   ....*....|....*....|....*....|....*....|....*.
gi 1593551732 1439 GVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1484
Cdd:pfam05695 1441 GVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1620-1816 4.04e-77

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 252.68  E-value: 4.04e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1620 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITVFLNKFLDNKPQGFLIDDIDIdasddiddsddidasdd 1699
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1700 iddsddidrdldtelelltmmnaltmDTMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLSLGLL 1772
Cdd:cd19505     64 --------------------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLL 117

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1593551732 1773 VNHLSRDCERYSTRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19505    118 LNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1625-1891 4.04e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 54.24  E-value: 4.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1625 RLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITV----FLNKFLDNKPQgfliddididasddiddsddidasddi 1700
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------------- 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1701 ddsddIDRDLdtelelltmmnaltmdtmpeidrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESNYLslgll 1772
Cdd:COG1222    159 -----NVREV-----------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT----- 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1773 VNHL--------SRDcerystrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFRLE 1840
Cdd:COG1222    200 VNQLlaeldgfeSRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLA 266

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1593551732 1841 KKMFhTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1891
Cdd:COG1222    267 DDVD-LDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4215.84  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNLVGSFIHVFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKSV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732   81 ILFVVAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDPKGSSNINRLIISLLYLPKGKKISESCFLNPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  161 WVLPITKKCSMPEFNWGSRWWRNWIGKKRDSRYKISNETVAGIEILFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  241 LRKRRNRINLNSGPLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTKSSFVQVTDSNQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  401 RDHLDSISNEDSEYHTLINQREIQQRKERSILWDPSFLQMERTEIESDRFPKCLSGYSSMSPLFTEREKQMINHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  481 EEFLGNPKRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDLSFVPSRRSENQEMVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  641 DSYGLDQKQFLNEVFNSRDESKKKSLLALPPIFYEENESFYRRIKKKWVRISCGNDLEDPKPKRVVFASNNIMEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQKDQIGKDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800
Cdd:CHL00206   721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  801 TERSMNRDPNAYRYKWSNGSKNFQEHLDHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKPLGFFLSKSLLFLSK 880
Cdd:CHL00206   801 TERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFLSK 880

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  881 LLFFLSNSLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKLKAFLLDDHDPSQKSKFLINGGTIS 960
Cdd:CHL00206   881 KLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTIS 960

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  961 PFLFNKIPKWMIDSFHTRNNRRKSLDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFSFYCNKR 1040
Cdd:CHL00206   961 PFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKR 1040

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120
Cdd:CHL00206  1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1121 PSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMDLIHTPCSEKDLPSEKRK 1200
Cdd:CHL00206  1121 PIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRK 1200

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280
Cdd:CHL00206  1201 KRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1281 GSDISWRILQKKL--CLPQWNLISEISSKCLHNLLLSEEMIHRKNESP--STHLRSPNVREFLYSILFLLLVAGYLVRTH 1356
Cdd:CHL00206  1281 GSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPliWTHLRSPNVREFLYSILFLLLVAGYLVRTH 1360

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1357 LLFVSRASSELQTEFEKVKSLMIPSSMVELRKLLDRYPTSEPNSFWLKNLFLVALEQLGNSLEEILGSafGGNMLLGGGS 1436
Cdd:CHL00206  1361 LLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGGGP 1438

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1437 AYGVKSIRSKKKYlniNLIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1516
Cdd:CHL00206  1439 AYGVKSIRSKKKY---LNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1517 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGFQMIEQPGAIYLRYLVDIHKKYLMNYEFNTSCLAERRISLA 1596
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLA 1595

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1597 HYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITVFLNKFLDNKPQGFL 1676
Cdd:CHL00206  1596 HYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFL 1675

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1677 iddididasddiDDSDDIDASDDIDDSDDIDRDLDTelELLTMMNALTMDTMPEIDRFYITLQFELAKAMSPCIIWIPNI 1756
Cdd:CHL00206  1676 ------------IDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNI 1741

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1757 HDLDVNESNYLSLGLLVNHLSRDCERYSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1836
Cdd:CHL00206  1742 HDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG 1821

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1837 FRLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1916
Cdd:CHL00206  1822 FHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRA 1901

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1917 VAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1996
Cdd:CHL00206  1902 VAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGL 1981

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1997 VENDSDVVHGLLEVESALVGSSRTEKDCSQFDNDRVILLRRPEPRNPLDMMQNGSCSILDQRFLYEKYESEFEEGGGEGA 2076
Cdd:CHL00206  1982 VENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGA 2061

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2077 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDWIERPNELGFPYWSRSFRGKRIISDEEDELQENDSEFLQSGTMQYQTRDRS 2156
Cdd:CHL00206  2062 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRS 2141

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2157 SKEQGLFRISQFIWDPADPLFFLFKDQLFVSVFSHRELFADEEMSKGLFTSQTDPPTSIYKGWFIKNTQEKHFELLINRQ 2236
Cdd:CHL00206  2142 SKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQ 2221

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 2237 RWLRTNSLLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIEFM 2296
Cdd:CHL00206  2222 RWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1484 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2877.42  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNLVGSFIHVFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKSV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732   81 ILFVVAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDPKGSSNINRLIISLLYLPKGKKISESCFLNPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  161 WVLPITKKCSMPEFNWGSRWWRNWIGKKRDSRYKISNETVAGIEILFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  241 LRKRRNRINLNSGPLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTKSSFVQVTDSNQLKGSSDQS 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  401 RDHLDSISNEDSEYHTLINQREIQQRKERSILWDPSFLQMERTEIESDRFPKCLSGYSSMSPLFTEREKQMINHLLPEEI 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  481 EEFLGNPKRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDLSFVPSRRSENQEMVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  641 DSYGLDQKQFLNEVFNSRDESKKKSLLALPPIFYEENESFYRRIKKKWVRISCGNDLEDPKPKRVVFASNNIMEAVNQYR 720
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQKDQIGKDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800
Cdd:pfam05695  721 LIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISR 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  801 TERSMNRDPNAYRYKWSNGSKNFQEHLDHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKPLGFFLSKSLLFLSK 880
Cdd:pfam05695  801 TERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSK 880

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  881 LLFFLSNSLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKLKAFLLDDHDPSQKSKFLINGGTIS 960
Cdd:pfam05695  881 FLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLINGGTIS 960

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732  961 PFLFNKIPKWMIDSFHTRNNRRKSLDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFSFYCNKR 1040
Cdd:pfam05695  961 PFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKR 1040

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120
Cdd:pfam05695 1041 FPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHF 1120

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1121 PSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMDLIHTPCSEKDLPSEKRK 1200
Cdd:pfam05695 1121 PIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRK 1200

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280
Cdd:pfam05695 1201 KRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMH 1280

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1281 GSDISWRILQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRKNESP--STHLRSPNVREFLYSILFLLLVAGYLVRTHLL 1358
Cdd:pfam05695 1281 GSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPliSTHLRSPNVREFFYSILFLLLVAGYLVRTHLL 1360

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1359 FVSRASSELQTEFEKVKSLMIPSSMVELRKLLDRYPTSEPNSFWLKNLFLVALEQLGNSLEEILGSAFGGNMLLGGGSAY 1438
Cdd:pfam05695 1361 FVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGGNMLLGGGPAY 1440

                         1450      1460      1470      1480
                   ....*....|....*....|....*....|....*....|....*.
gi 1593551732 1439 GVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1484
Cdd:pfam05695 1441 GVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1620-1816 4.04e-77

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 252.68  E-value: 4.04e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1620 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITVFLNKFLDNKPQGFLIDDIDIdasddiddsddidasdd 1699
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1700 iddsddidrdldtelelltmmnaltmDTMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLSLGLL 1772
Cdd:cd19505     64 --------------------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLL 117

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1593551732 1773 VNHLSRDCERYSTRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19505    118 LNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1615-1816 7.04e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 59.99  E-value: 7.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1615 FPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITV----FLNKFLDnkpqgfliddididasddidd 1690
Cdd:cd19481     10 EAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVklssLLSKYVG--------------------- 68

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1691 sddidasddiddsddidrdldtelELLTMMNALtmdtmpeidrfyitlqFELAKAMSPCIIWIPNIHDL-----DVNESN 1765
Cdd:cd19481     69 ------------------------ESEKNLRKI----------------FERARRLAPCILFIDEIDAIgrkrdSSGESG 108

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1593551732 1766 YLSLglLVNHLSRDCERYSTRN-ILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19481    109 ELRR--VLNQLLTELDGVNSRSkVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1625-1891 4.04e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 54.24  E-value: 4.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1625 RLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITV----FLNKFLDNKPQgfliddididasddiddsddidasddi 1700
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------------- 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1701 ddsddIDRDLdtelelltmmnaltmdtmpeidrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESNYLslgll 1772
Cdd:COG1222    159 -----NVREV-----------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT----- 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1773 VNHL--------SRDcerystrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFRLE 1840
Cdd:COG1222    200 VNQLlaeldgfeSRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLA 266

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1593551732 1841 KKMFhTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1891
Cdd:COG1222    267 DDVD-LDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1634-1805 1.56e-06

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 49.51  E-value: 1.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1634 ILVIGSIGTGRSYLVKYLAANSYVPFITV----FLNKFLDNKPQGFliddididasddiddsddidasddiddsddidRD 1709
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIsgseLVSKYVGESEKRL--------------------------------RE 48

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1710 LdtelelltmmnaltmdtmpeidrfyitlqFELAKAMSPCIIWIPNIHDL--DVNESNYLSLGLLVNHL--SRDCERYST 1785
Cdd:pfam00004   49 L-----------------------------FEAAKKLAPCVIFIDEIDALagSRGSGGDSESRRVVNQLltELDGFTSSN 99

                          170       180
                   ....*....|....*....|
gi 1593551732 1786 RNILVIASTHIPQKVDPALI 1805
Cdd:pfam00004  100 SKVIVIAATNRPDKLDPALL 119
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 1618-1814 3.08e-03

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 40.34  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1618 HEKPFSlRLALSPSRGILVIGSIGTGRSYLVKYLAANSYVPFITV----FLNKFLDNKPQGFliddididasddiddsdd 1693
Cdd:cd19511     15 HPDAFK-RLGIRPPKGVLLYGPPGCGKTLLAKALASEAGLNFISVkgpeLFSKYVGESERAV------------------ 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593551732 1694 idasddiddsddidRDLdtelelltmmnaltmdtmpeidrfyitlqFELAKAMSPCIIWIPNIHDLDVNESNYLSLGL-- 1771
Cdd:cd19511     76 --------------REI-----------------------------FQKARQAAPCIIFFDEIDSLAPRRGQSDSSGVtd 112

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1593551732 1772 -LVNHLSRDCERYST-RNILVIASTHIPQKVDPALIAPNKLNTCI 1814
Cdd:cd19511    113 rVVSQLLTELDGIESlKGVVVIAATNRPDMIDPALLRPGRLDKLI 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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