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Conserved domains on  [gi|1593549708|ref|YP_009561230|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Geochelone elegans]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.76e-161

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.05  E-value: 1.76e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.76e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.05  E-value: 1.76e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 5.71e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 124.84  E-value: 5.71e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------------LSSITNA 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLygisllygatgslnLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  79 wtLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM----MTAQSMNTSLM 154
Cdd:COG1007   192 --LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAADWQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWM-VTILTLSPK-LTLLTFY--TYITMTSTMFLMIKLLET-NK 226
Cdd:COG1007   270 LLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLSRkGG 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1593549708 227 ISTMMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYY 299
Cdd:COG1007   350 EAEEIEDLAGLarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.51e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  23 SNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNISCTI---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  98 -------LTTALAIKLGLAPFHFWLPEVLQGA-TTTTALILTTWQKLAP-----MSLLMMTAQSMNTSLMLTLGLMSAAI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 165 GGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL----SPKLTLLTFYTYITMTSTMFLMIKLLETNKIST-----MMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 236 KLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-296 4.85e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.11  E-value: 4.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------LSSITNAWTLGQW 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLfgisliygFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  85 SITQMSNNISCTI----LTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM-------MTAQSMNTSL 153
Cdd:TIGR01770 192 LSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY--TYITMTSTMFLMIKLLETNK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 227 ---ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.76e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.05  E-value: 1.76e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.54e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 419.21  E-value: 2.54e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSmNTSLMLTLGLM 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1593549708 321 QKRY-LAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 1.04e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 399.68  E-value: 1.04e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTI 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.91e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 365.32  E-value: 3.91e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHK-T 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEnT 320

                         330       340
                  ....*....|....*....|....*..
gi 1593549708 320 NQKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 6.08e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 311.52  E-value: 6.08e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-339 5.09e-90

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 273.34  E-value: 5.09e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*
gi 1593549708 321 QKRY------LAPMTALATSMLPIT 339
Cdd:MTH00041  321 ITVYgvilsiLSSISILGLLLIPLF 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-300 2.40e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 196.97  E-value: 2.40e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAwt 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  81 lgqwSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTaqsMNTSLMLTLGLM 160
Cdd:MTH00160   80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYS 300
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS 292
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-302 6.03e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.08  E-value: 6.03e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWsitqmsnn 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  93 ISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNT-SLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00144   85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYItMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI-VSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLSL 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTI 302
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-310 8.64e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 169.19  E-value: 8.64e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  12 SLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITnawtlgQWSITQMSN 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  92 NISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRIsYYSTITLPPNSTN 310
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL-IFNFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-302 1.18e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.21  E-value: 1.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  12 SLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSItqmsn 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL----- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  92 niSCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPmsLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00197   81 --SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTI 302
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 5.71e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 124.84  E-value: 5.71e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------------LSSITNA 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLygisllygatgslnLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  79 wtLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM----MTAQSMNTSLM 154
Cdd:COG1007   192 --LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAADWQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWM-VTILTLSPK-LTLLTFY--TYITMTSTMFLMIKLLET-NK 226
Cdd:COG1007   270 LLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLSRkGG 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1593549708 227 ISTMMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYY 299
Cdd:COG1007   350 EAEEIEDLAGLarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 6.81e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 117.44  E-value: 6.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLS-------------SITNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  79 WTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTaqSMNTSLMLTLG 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 159 LMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL----SPKLTLLTFYTYITMTSTMFLMIKLLETNK--ISTMMT 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 233 SWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.76e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.45  E-value: 2.76e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------------LSSITNA 78
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  79 WTLGQWSITQMSnnISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM----MTAQSMNTSLM 154
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFGGLSEDWQ 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY--TYITMTSTMFLMIKLLETN-K 226
Cdd:PRK05777  271 QVLAIIAIAsmlVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVISLLRRKgG 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 227 ISTMMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK05777  351 EAESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.51e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  23 SNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNISCTI---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  98 -------LTTALAIKLGLAPFHFWLPEVLQGA-TTTTALILTTWQKLAP-----MSLLMMTAQSMNTSLMLTLGLMSAAI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 165 GGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL----SPKLTLLTFYTYITMTSTMFLMIKLLETNKIST-----MMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 236 KLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-296 4.85e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.11  E-value: 4.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------LSSITNAWTLGQW 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLfgisliygFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  85 SITQMSNNISCTI----LTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM-------MTAQSMNTSL 153
Cdd:TIGR01770 192 LSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY--TYITMTSTMFLMIKLLETNK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 227 ---ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 1.66e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 106.00  E-value: 1.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNN 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  93 IS----------CTILTTALAIKLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAPMSLLMMTAQSMNT 151
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLT----------KVGVYAILRVLTLLFGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 152 S-------LMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYT--YITMTSTMFL--- 217
Cdd:COG0651   266 DpalflgtLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAgaLFHLlnHALAKALLFLaag 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 218 -MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:COG0651   346 aIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 6-296 9.63e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 101.25  E-value: 9.63e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708   6 STIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQW 84
Cdd:MTH00199   99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  85 SI----TQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNtsLMLTLGLM 160
Cdd:MTH00199  179 SIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVL 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLG---WMVTILTL-SPKLTLLTFYTYITMTSTMFLMIKLLETNK--ISTMMTSW 234
Cdd:MTH00199  257 SIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLS 336

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1593549708 235 TKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:MTH00199  337 RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-312 1.11e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.98  E-value: 1.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  15 MGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAI---------EAAIKYFLTQATASMLIL-------------- 71
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLfgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  72 -LSSITNAwTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLmmTAQSMN 150
Cdd:MTH00198  279 mLGTILSA-TLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVIT 355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 151 TSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT--MTSTM--FLMIKLLETNK 226
Cdd:MTH00198  356 SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVtyLVSALasFTVICTLEEFG 435

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 227 IST-----------------MMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTK----QHMPI---I 278
Cdd:MTH00198  436 TRTptsrqrdgsfgnynlvrRLVDLTILsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKiafsSSLSIyylV 515

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1593549708 279 ATTMALLSLLNLFFYLRI--SYYSTITLPPNSTNYP 312
Cdd:MTH00198  516 ALFAIICTCISAFYYIRIvaTIYFNFTRPLIKTKTP 551
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-316 2.07e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 2.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  51 RAIEAAIKYFLTQATASMLIL---------------LSSITNAWtlgqwSITQMSNNISCTI----LTTALAIKLGLAPF 111
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGL-----INTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 112 HFWLPEVLQGATTTTALILTTWQKLAPmslLMMTAQSMNT----------SLMLTLGLMSAAIGGWGGLNQTQLRKIMAF 181
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAA---SALATRIFDIpfyfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAY 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 182 SSIAHLGW-MVTILTLSPKL---TLLTF-YTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLA 252
Cdd:CHL00049  311 SSIGQIGYvIIGIIVGDSNDgyaSMITYmLFYIFMNLGTFACIVLFGlrtgTDNIRDYAGLYTKDPFLALSLALCLLSLG 390

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 253 GLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWR 316
Cdd:CHL00049  391 GIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGRNQEITPYVRNYR 454
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 38-268 2.16e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 64.58  E-value: 2.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAW-TLGQWSITQMSNNISCTILTT--------ALAIK 105
Cdd:TIGR01972 137 AMLIPmylLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELLNLPLPFGVQTwlflaffiAFAVK 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 106 LGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSL------LMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKI 178
Cdd:TIGR01972 217 VPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRL 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMV------TILTLSPKLTLLTFYTYITMtsTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTL 248
Cdd:TIGR01972 297 IAYSSISHMGFVLlgifsfNELGISGAVFQMISHGLITA--ALFLLVGVLYerahTRDIAKYGGLANKMPVLAAFFMLFA 374

                         250       260
                  ....*....|....*....|
gi 1593549708 249 MSLAGLPPLTGFMPKWLIMQ 268
Cdd:TIGR01972 375 MASLGLPGTSGFVGEFLILL 394
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-267 3.33e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.95  E-value: 3.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWS---ITQMSNNISCTI-------LTTALAI 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiAELAAAPLPLTAqlllflaFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAP-----MSLLMMTAQSMN-TSLMLTLGLMSAAIGGW 167
Cdd:COG1008   222 KVPMFPFHTWLPDahveaptagsvLLAGVLL----------KMGGygllrFALPLFPEASAYfAPLLAALGVIGIIYGAL 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 168 GGLNQTQLRKIMAFSSIAHLGWMVtiltlspkLTLLTFYTY------ITM------TSTMFLMIKLLE----TNKISTMM 231
Cdd:COG1008   292 VALAQTDLKRLIAYSSVSHMGFVL--------LGIFALNPLglqgavLQMvshgliTAALFLLVGVLYdrthTRDIADLG 363

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1593549708 232 TSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIM 267
Cdd:COG1008   364 GLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 3.54e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.25  E-value: 3.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  34 EISTLS---IIPLIAKqhhpRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNN-ISCTILTTALAI----- 104
Cdd:PRK08668  128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGlINDTSTGFALIVflfll 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 -----KLGLAPFHFWLPE-----------VLQGATT-------TTALILTTWQKLAPMSLLMMTAQSMNTSLMLtLGLMS 161
Cdd:PRK08668  204 afgvaKAGIFPLHVWAPDayseapqsfsaVLSGQLSklgaygfLLVLYVLPGTKLFSEFGTYRGVPLFNYILAW-LGNIS 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 162 AAIGGWGGLNQTQLRKIMAFSSIAHLGW-MVTILTLSPKLTLLTFYTYIT---MTSTMFLMIKLL----ETNKISTMMTS 233
Cdd:PRK08668  283 IIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLGFAGGLFHVFNhalFKGLFFLIFAAViyrtGTTKISEMGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1593549708 234 WTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 7.77e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.07  E-value: 7.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  33 LEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLG------------QWSITQMSNNISCTILT 99
Cdd:PRK12667  142 LEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGtlnmadlsakirGLSFPLTGGLAGNPPLA 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 100 TALA---------IKLGLAPFHFWLPEV-----------LQGATTTT--ALILTTWQKLAPMSLLMMTAQSMNTSLMLTL 157
Cdd:PRK12667  222 LGVAlalalwaftIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVgaYAIIRFLYTIFGISPSLIDFRAALSPILIIL 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 158 GLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT----------MTSTMFlmIKLLETNKI 227
Cdd:PRK12667  302 GAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVF--IHAAGTRDI 379

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 228 STMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK12667  380 DELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-314 1.98e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.82  E-value: 1.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  33 LEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNISCT--------ILTTALAI 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENptvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPE-----------VLQGATTTTALILttwqkLAPMSLLMMTAQSMNT----SLMLTLGLMSAAIGGWGG 169
Cdd:PRK08375  215 KAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYA-----LIRIYFTVFGGDFRFAlglgWLLAVLALLSMLVGSLAA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 170 LNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYT--YITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLN 241
Cdd:PRK08375  290 LGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEvtygTRRLSELSGLGRRMPLTA 369

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 242 AMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQ 314
Cdd:PRK08375  370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQ 442
PRK12650 PRK12650
DUF4040 family protein;
96-285 9.67e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.06  E-value: 9.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  96 TILTTALAIKLGLA--------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS-----LMLTLGLMSA 162
Cdd:PRK12650  204 PGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITA 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 163 AIGGWGGLNQTQLRKIMAFSSIAHLGWMV-TILTLSP-KLTLLTFYT--YITMTSTMFLMIKLLE----TNKISTMMTSW 234
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVaTIGVGTPfALTAAVVHTlaHALFKSSLFMLIGVVDhqagTRDIRRLGSLW 363

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 235 TKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELtkQHMPIIATTMALL 285
Cdd:PRK12650  364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAF--LEAPGGNAGVVLL 412
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.10e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.29  E-value: 1.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  50 PRAIEAAIKYFLTQATASMLILL-SSITNAWTLGQWSITQMSNNISCT---ILTTAL-------AIKLGLAPFHFWLPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslGLALALvfviagiAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 119 LQGATTTTALILTTWQKLAPMSL---LMMTAQSMNTS----LMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMV 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 192 TILTLSPK--LTLLTFY--TYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK02504  317 IGLVAGTEagYASMVFYllAYLFMNLGAFACVILFSlrtgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.72e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 2.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  33 LEISTLSIIPLIAKQHH-PRAIEAAIKYFLTQATASMLILLSSitnAWTLGQWSITQMS-------------NNISCTIL 98
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmsenptvvAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  99 TTALAIKLGLAPFHFWLPEVlQGATTTTALILTTWQKLAPMSLLM-----MTAQSMNTS----LMLTLGLMSAAIGGWGG 169
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDA-YPAAPSSISAMLLVIKQAGLYALArvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 170 LNQTQLRKIMAFSSIAHLGWM-----VTILTL-SPKLT----------LLTFYTYITMTSTMFL----MIKLLETNKIST 229
Cdd:PRK08376  306 VVQKDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMAsygeialaggIYHIVNHALYKALLFLtagaVIYETGTRNLNE 385

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1593549708 230 MMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMqELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK08376  386 LGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFH 453
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-268 6.90e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 56.90  E-value: 6.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  97 ILTTALAIKLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAPMSL-----LMMTAQSMNTSLMLtLGLM 160
Cdd:PRK12665  214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLT----------KVGVYAIirthtLLFPGGGLDTLLMV-VALL 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFYT--YITMTSTMFLMIKLLETNKISTMMTSWTK 236
Cdd:PRK12665  283 TMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVGLIERQAGSSSLRRLGG 362

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1593549708 237 L----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQ 268
Cdd:PRK12665  363 LakasPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-293 1.08e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 56.31  E-value: 1.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  48 HHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNIScTILTTALAIKLGLA------------PFHFWL 115
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAP-TILSSPLLTLILLLlllgafgksaqfPLHFWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 116 PE-----------------VLQGATTTTalilttwqKLAPmsLLMMTAQSMntSLMLTLGLMSAAIGGWGGLNQTQLRKI 178
Cdd:COG1009   235 PDamegptpvsallhaatmVKAGVYLLA--------RLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRV 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMVTILTLS-PKLTLLTFYTYITMTSTMFLM----IKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAG 253
Cdd:COG1009   303 LAYSTVSQLGYMFLALGVGaYVAALFHLLTHAFFKALLFLGagsvIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAG 382

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1593549708 254 LPPLTGFMPKWLIMQE-LTKQHMPIIATTMALLSLLNLFFY 293
Cdd:COG1009   383 IPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFY 423
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 18-291 2.46e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  18 LLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYF---------------LTQATASMLILLSSITNAWTlg 82
Cdd:PRK06458  122 LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWT-- 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  83 qwSITQMSNNISCTILTTALAI-------KLGLAPFHFWLPE-----------VLQGAttttalilttwqkLAPMSLL-- 142
Cdd:PRK06458  200 --ELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGV-------------LLNVALYav 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 143 ----MMTAQSMNT----SLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTS- 213
Cdd:PRK06458  265 lryyILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSl 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 214 -------TMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQElTKQHMPIIATTMALLS 286
Cdd:PRK06458  345 tksaiffASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTA-GLARGPLLIAILLLLL 423


                  ....*
gi 1593549708 287 LLNLF 291
Cdd:PRK06458  424 LTLAF 428
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 6.84e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 50.85  E-value: 6.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  38 LSIIPL---IAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSI---TQMSNNISCTI-------LTTALAI 104
Cdd:PRK06473  138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLSTqllllapILVGFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLL------MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRK 177
Cdd:PRK06473  218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 178 IMAFSSIAHLGWMVTILTLSPKLTLL-TFYTYIT---MTSTMFLMIKLL-------ETNKISTMMTSWTKLPMLNAMMML 246
Cdd:PRK06473  298 MVAYSSIGHMGYILLAAAAATPLSILaAVFQMIShglISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMIL 377

                         250       260
                  ....*....|....*....|
gi 1593549708 247 TLMSLAGLPPLTGFMPKWLI 266
Cdd:PRK06473  378 GVMASAGIPGMVGFIAEFLV 397
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-278 1.05e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.95  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  33 LEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSIT--QMSNNISCTILTTALAIKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 111 FHFWLPE-----------VLQGATTttalilttwqKLAPMSLLMMTAQSMNTSLMLTL-GLMSAAIGGWGGLNQTQLRKI 178
Cdd:PRK07234  203 SGLWLPLthseaeppvsaLLSGVVV----------KAGVFPLVRCALDVPGLDLIVRIfGVGTALLGVLFALLEKDLKRM 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMVtiltLSPKLTLLTFYTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLnammmLTLMSLAGL 254
Cdd:PRK07234  273 LAFSTISQLGFIL----AAPLVGGLYALAHGLVKSTLFLCAGALPsrnfTELISQMLGIGKWIPLT-----MASFSIAGF 343

                         250       260
                  ....*....|....*....|....
gi 1593549708 255 PPLTGFMPKWLIMQELTKQHMPII 278
Cdd:PRK07234  344 PLLAGFVSKVLTLKNLLPWQAIAL 367
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 2.90e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 48.94  E-value: 2.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  55 AAIKYFLTQATASMLILLSSITNAWTLGQWS------ITQMSNNISCTILTTAL----AIKLGLAPFHFWLPEV-LQGAT 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 124 TTTALILTTWQKLAPMSLLMMTAQ------SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLS 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFGLQlfpqtwSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 198 PKLTLL----TFYTYITMTSTMFLMIKLLET-------NKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLI 266
Cdd:PRK07363  318 TQLSLLgavaQMISHGLILALLFHLVGIVERkvgtrdlDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 1593549708 267 MQ 268
Cdd:PRK07363  398 FQ 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 19-270 4.88e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 4.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  19 LTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASM-----LILLSSIT-NAWTLGQWSITQMSNN 92
Cdd:PRK08676  117 FAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIfafigLIFLFSLTrQALGTGTLNWTELAAH 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  93 ----------ISCTILTTALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMTAQSMNT-------SLM 154
Cdd:PRK08676  197 asllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeqfsNVL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFYT--YITMTSTMFLMIKLLETNKISTM 230
Cdd:PRK08676  277 IGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHRQYRSDR 356

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1593549708 231 MTSWTKLPMLNAMMMLTLM----SLAGLPPLTGFMPKWLIMQEL 270
Cdd:PRK08676  357 FDRIFDVFRLQPVAAWGVIlgsaAIIGMPPFPLFLSKFFILLQL 400
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-288 8.06e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.61  E-value: 8.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 110 PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSM--NTSLMLTLGLMSAA---IGGWGGLNQTQLRKIMAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLFGGLtmlTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 185 AHLGWMVTILTLSPKLTLLTFYTYITMTS----TMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPP 256
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1593549708 257 LTGFMPKWLIMQELTkqHMPIIATTMALLSLL 288
Cdd:PRK12647  373 LFGFLAKELIYEALL--EAPLWSLILTVAAVL 402
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-263 1.49e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.84  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  97 ILTTALAiKLGLAPFHFWLPEVLQGATtttalilttwqklaPMS--------------LLMMTAQSMNTS-----LMLTL 157
Cdd:PRK12644  209 ILVGALS-KSAIVPFHFWLPGAMAAPT--------------PVSaylhaaamvkagiyLVARLAPGFADVpvwrpTVLVL 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 158 GLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLtfyTYITMT-------STMFLMIKLLE----TNK 226
Cdd:PRK12644  274 GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAAL---AGLAMLlahalfkAALFLVVGIIDhstgTRD 350

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1593549708 227 ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK12644  351 IRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 154-296 2.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT----MTSTMFLMIKLLE----TN 225
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTT 361

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 226 KISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK12662  362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-298 2.39e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.79  E-value: 2.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  34 EISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNI-----SCTILTTALAIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 109 A------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS--------LMLTLGLMSAAIGGWGGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGLsyfpsaqgVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 175 LRKIMAFSSIAHLGWMVTILTLSPKLT----LLTFYTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMML 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLGAGIVSyrtkTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1593549708 247 TLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 13-275 3.60e-05

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 45.61  E-value: 3.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  13 LIMGPLL-TISSNHWILAWTGLEISTLSIIPLIAKQHH-PRAIEAAIKYFLTQATASM-----LILLSSITNAWTLgQWS 85
Cdd:TIGR00940 114 AFMGAMLgVVLSDNLILLYVFWELTSIVSFLLISYWHHrAHSRYGAQKSLTITVFGGLamlggLILLGKITGSFSI-DAV 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  86 ITQMSNNISCTILTTALAIKLGLA-------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS-----L 153
Cdd:TIGR00940 193 IASADAIRNSPLFGTAMVLVLLGAftksaqfPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTeawfwI 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFLMIKLLE--TNKISTM 230
Cdd:TIGR00940 273 VGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLgSPSYHYQGDDSKIYALAAVAAVFHLINhaTFKGSLF 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 231 MTS------------------WTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHM 275
Cdd:TIGR00940 353 MAAgiidhetgtrdirklgglFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFAEAITAHL 415
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-267 4.98e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 4.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT----LGQWSITQ-MSNNISCTILT-------TAL 102
Cdd:PRK05846  142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPGVQYwlflaffIAF 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 103 AIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAP-----MSLLMMTAQSMN-TSLMLTLGLMSAAIGGWGGLNQTQL 175
Cdd:PRK05846  222 AVKMPMFPLHTWLPDAhVQAPTAGSVLLAGILLKMGAygllrFSLPLFPDASHEfAPIIITLGVIAIIYGALVALAQTDI 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 176 RKIMAFSSIAHLGWmVTILTLSpkLTLL-----TFYtyitM------TSTMFLMIKLLETNKISTMMTS----WTKLPML 240
Cdd:PRK05846  302 KKLIAYSSISHMGF-VTLGIFA--GNQLgiqgaIFQ----MishglsSAALFLLVGVLYDRLHTRDIADygglAKVMPVL 374

                         250       260
                  ....*....|....*....|....*..
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIM 267
Cdd:PRK05846  375 AAFFLFFAMASLGLPGTSGFVGEFLIL 401
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-305 5.76e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 44.68  E-value: 5.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 111 FHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTA-----QSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIA 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplfeqAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 186 HLGWMVTILTLSPKLTLL------TFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTG 259
Cdd:MTH00020  309 QLGYMVVACGLSHYSISLfhlmnhAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTG 388

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1593549708 260 FMPKWLIMQELTKQHMPIIATTMALLS-LLNLFFYLRISYYSTITLP 305
Cdd:MTH00020  389 FYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNT 435
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-296 6.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.55  E-value: 6.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 140 SLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYTYITM--TSTM 215
Cdd:PRK07691  264 TLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIgaIYYLIHDMivKAAL 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 216 FL----MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLF 291
Cdd:PRK07691  344 FLligiMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLY 423


                  ....*
gi 1593549708 292 FYLRI 296
Cdd:PRK07691  424 SVIKI 428
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-265 6.91e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.53  E-value: 6.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 101 ALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMT-------AQSMNTSLmLTLGLMSAAIGGWGGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPAV-IAMGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 173 TQLRKIMAFSSIAHLGwMVTILTLSPKLTLLTFYTYITM-----TSTMFLMIKLLETNKISTMMTSWTKL----PMLNAM 243
Cdd:MTH00226  318 IDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgivSSLLFILVTILYDRHHTRLIKYYRGLsitmPIWGTI 396

                         170       180
                  ....*....|....*....|..
gi 1593549708 244 MMLTLMSLAGLPPLTGFMPKWL 265
Cdd:MTH00226  397 MIVTSLANVAVPPSGNFIGEYL 418
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 7.04e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.93  E-value: 7.04e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 291 FFYLRISYYSTITLPPNSTNYPQQWRHKTNQKRY-LAPMTALATSMLPITP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 7.78e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.56  E-value: 7.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLapfHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMT----AQSMNTSLMLTL-GLMSAAIGGWGGLNQTQLRKIM 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 180 AFSSIAHLGWMVTILTL--SPKLTLLTFYTYITMTSTMFL----MIKLLETNK--ISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsVIHSTTVDEqdMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170
                  ....*....|....*..
gi 1593549708 252 AGLPPLTGFMPKWLIMQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 143-300 1.10e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 43.87  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 143 MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFL---- 217
Cdd:MTH00209  231 SLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLnQPELAFFHLITHALFKALLFIcagn 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 218 MI-KLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSL-LNLFFYLR 295
Cdd:MTH00209  311 IIhSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMR 390


                  ....*
gi 1593549708 296 ISYYS 300
Cdd:MTH00209  391 LSYFS 395
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 2.47e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  55 AAIKYF-LTQATAS----MLILLSSITNAWTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALI 129
Cdd:PRK08667  163 AGIFYFvMTQLSTVflmlGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 130 LT-TWQKLAPMSLL-----MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLG--------WMVTILT 195
Cdd:PRK08667  243 MSgVMLKVAVYGLVrflmdVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 196 LSPKLTLLTF-------YTYITMTSTMFL----MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKW 264
Cdd:PRK08667  323 GLDTLALLALggalfhsLNHALFKSLLFLtagsVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 1593549708 265 LIMQEL 270
Cdd:PRK08667  403 LLYESF 408
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 148-303 4.60e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 41.92  E-value: 4.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 148 SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL------TFYTYITMTSTMFLMIKL 221
Cdd:MTH00210  272 PLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLfhlmnhAFFKALLFLSAGSVIHAV 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 222 LETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS-LLNLFFYLRISYYS 300
Cdd:MTH00210  352 SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSaLLTAFYSIRLIYLT 431


                  ...
gi 1593549708 301 TIT 303
Cdd:MTH00210  432 FIT 434
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
157-296 6.66e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.47  E-value: 6.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 157 LGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY---TYITMTSTMFL---MIKLLETN 225
Cdd:PRK12663  275 LATMAAItmvIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngAIFYlvhDMVVKTALFLIagsLVRLTGYR 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 226 KISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK12663  355 SLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 27-286 7.40e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 41.29  E-value: 7.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708  27 ILAWTGLEIstLSIIPLIAKQHhPRAIEAAIKYFLTQATASMLILLSSitnAWTLGQ--WSITQM-----SNNISCTILT 99
Cdd:MTH00207  114 LLGWDGLGL--VSFILVIYYQN-PKSLGAGMITALTNRIGDVMLLLSI---GWTLNQghWSITNMwqtdmNNYIALSIMI 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 100 TALAiKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM-----MTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQ 174
Cdd:MTH00207  188 AAMT-KSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIrfypfLSSTYWFNPALLLTASLTMLMAGLSAMTECD 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 175 LRKIMAFSSIAHLGWMVTILTLS-PKLTLLTFYTYITMTSTMFL----MIKL-LETNKISTMMTSWTKLPMLNAMMMLTL 248
Cdd:MTH00207  267 MKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVcagsLIHShHHSQDLRTMGNLTNQMPLTTSCLLIAN 346

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1593549708 249 MSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS 286
Cdd:MTH00207  347 LALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLA 384
PRK12646 PRK12646
DUF4040 family protein;
110-272 1.46e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.51  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 110 PFHFWLPEVLQGATTTTALILTTWQKLAPMSLL-----MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSI 184
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 185 AHLGWMVTI------LTLSPKLTLLTFYTYITMTSTMFLMIKLL----------------ETNKISTMMTSWTKLPMLNA 242
Cdd:PRK12646  308 SQLGMIMAMvgigggYAQHQQDAIASIYVFVLFAALFHLMNHAIfkcalfmgvgiidheaGTRDIRILSGMRQLFPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|
gi 1593549708 243 MMMLTLMSLAGLPPLTGFMPKWLIMQELTK 272
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 148-301 1.57e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 40.21  E-value: 1.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 148 SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFL---MIKLLE 223
Cdd:MTH00151  237 SGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLgMPSLALFHLYTHALFKALLFLcagSIIHSS 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 224 TNK--ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFY-LRISYYS 300
Cdd:MTH00151  317 SGTqdIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYsARLSFCL 396


                  .
gi 1593549708 301 T 301
Cdd:MTH00151  397 V 397
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-255 6.07e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.49  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 101 ALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSL------LMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQT 173
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAhVEAPVAGSVILAGVLLKLGGYGFirfswpLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQV 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 174 QLRKIMAFSSIAHLGwMVTILTLSPKLTLLTFYTYITM-----TSTMFLMIKLL----ETNKISTMMTSWTKLPMLNAMM 244
Cdd:MTH00217  295 DLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLMLahglvSSALFIAVTFLyerhHTRLIKYYRGMVITMPLFGILM 373

                         170
                  ....*....|.
gi 1593549708 245 MLTLMSLAGLP 255
Cdd:MTH00217  374 LLLVLANASIP 384
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 8.75e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 37.88  E-value: 8.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 107 GLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSL-----MLTLGLMSAAIGGWGGLNQTQLRKIMA 180
Cdd:PRK08042  195 GIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 181 FSSIAHLG--------WMVTILTLSPKLTLLTF-------YTYITMTSTMFLMIKLL----ETNKISTMMTSWTKLPMLN 241
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1593549708 242 AMMMLTLMSLAGLPPLTGFMPKWLIMQELTK 272
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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