Tm-1-like ATP-binding domain-containing protein is a UPF0261 family protein similar to Solanum lycopersicum Tm-1 protein that binds to ToMV replication proteins and thereby inhibits replication complex formation
ATP-binding domain found in plant Tm-1-like (Tm-1L) and similar proteins; Members of this ...
4-402
0e+00
ATP-binding domain found in plant Tm-1-like (Tm-1L) and similar proteins; Members of this family have been annotated as UPF0261-domain containing proteins. They are found in plants, fungi, bacteria, and archaea. A three-dimensional structure of a complex between the tomato resistance gene product Tm-1 and tomato mosaic virus helicase reveals an organization encompassing two distinct structurally similar domains and an ATP-binding site present in the N-terminal subdomain. The Tm-1-like domain is found co-occurring with a C-terminal TIM-barrel signal transduction (TBST) domain in some plant proteins like Tm-1, and with an N-terminal ABC-transporter ATP-binding domain in a few bacterial proteins.
Pssm-ID: 350626 Cd Length: 399 Bit Score: 656.05 E-value: 0e+00
ATP-binding domain found in plant Tm-1-like (Tm-1L) and similar proteins; Members of this ...
4-402
0e+00
ATP-binding domain found in plant Tm-1-like (Tm-1L) and similar proteins; Members of this family have been annotated as UPF0261-domain containing proteins. They are found in plants, fungi, bacteria, and archaea. A three-dimensional structure of a complex between the tomato resistance gene product Tm-1 and tomato mosaic virus helicase reveals an organization encompassing two distinct structurally similar domains and an ATP-binding site present in the N-terminal subdomain. The Tm-1-like domain is found co-occurring with a C-terminal TIM-barrel signal transduction (TBST) domain in some plant proteins like Tm-1, and with an N-terminal ABC-transporter ATP-binding domain in a few bacterial proteins.
Pssm-ID: 350626 Cd Length: 399 Bit Score: 656.05 E-value: 0e+00
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
(illustrated example)
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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