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Conserved domains on  [gi|1590643556|ref|XP_028222971|]
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pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like isoform X1 [Glycine soja]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 287-813 1.59e-93

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 312.55  E-value: 1.59e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 287 WKIDNLAEKSQCFNPELVAHWLRLCYN---MEEVGRVHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKN 363
Cdd:PLN03077   72 KLLESMQELRVPVDEDAYVALFRLCEWkraVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 364 TVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWRNLI-VDNAVVHF 442
Cdd:PLN03077  152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVdVVNALITM 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 443 YAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLH 522
Cdd:PLN03077  232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 523 GAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLT 602
Cdd:PLN03077  312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 603 VLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGcarLGLE 682
Cdd:PLN03077  392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG---LRLN 468

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 683 H---EALEFLQEMMEEgVLPNSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVF 759
Cdd:PLN03077  469 NrcfEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1590643556 760 dNMPERNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISACG 813
Cdd:PLN03077  548 -NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 287-813 1.59e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 312.55  E-value: 1.59e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 287 WKIDNLAEKSQCFNPELVAHWLRLCYN---MEEVGRVHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKN 363
Cdd:PLN03077   72 KLLESMQELRVPVDEDAYVALFRLCEWkraVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 364 TVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWRNLI-VDNAVVHF 442
Cdd:PLN03077  152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVdVVNALITM 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 443 YAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLH 522
Cdd:PLN03077  232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 523 GAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLT 602
Cdd:PLN03077  312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 603 VLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGcarLGLE 682
Cdd:PLN03077  392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG---LRLN 468

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 683 H---EALEFLQEMMEEgVLPNSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVF 759
Cdd:PLN03077  469 NrcfEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1590643556 760 dNMPERNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISACG 813
Cdd:PLN03077  548 -NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 664-712 8.29e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 8.29e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1590643556 664 RDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACA 712
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 667-701 9.39e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.39e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1590643556 667 VSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNS 701
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 287-813 1.59e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 312.55  E-value: 1.59e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 287 WKIDNLAEKSQCFNPELVAHWLRLCYN---MEEVGRVHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKN 363
Cdd:PLN03077   72 KLLESMQELRVPVDEDAYVALFRLCEWkraVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 364 TVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWRNLI-VDNAVVHF 442
Cdd:PLN03077  152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVdVVNALITM 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 443 YAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLH 522
Cdd:PLN03077  232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 523 GAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLT 602
Cdd:PLN03077  312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 603 VLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGcarLGLE 682
Cdd:PLN03077  392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG---LRLN 468

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 683 H---EALEFLQEMMEEgVLPNSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVF 759
Cdd:PLN03077  469 NrcfEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1590643556 760 dNMPERNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISACG 813
Cdd:PLN03077  548 -NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
PLN03077 PLN03077
Protein ECB2; Provisional
 381-793 4.87e-78

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 270.18  E-value: 4.87e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 381 DEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSR-WRNLIVDNAVVHFYAKCGNISSAFRAFDCM 459
Cdd:PLN03077   68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHpSLGVRLGNAMLSMFVRFGELVHAWYVFGKM 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 460 AERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKSDVFIGTS 539
Cdd:PLN03077  148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 540 LVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMACGTIKSLLFG 619
Cdd:PLN03077  228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 620 REVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLP 699
Cdd:PLN03077  308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 700 NSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYAR 779
Cdd:PLN03077  388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

                         410
                  ....*....|....
gi 1590643556 780 NGHAREALKLMHRM 793
Cdd:PLN03077  468 NNRCFEALIFFRQM 481
PLN03077 PLN03077
Protein ECB2; Provisional
 308-763 3.71e-64

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 231.28  E-value: 3.71e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 308 LRLCYNMEEVGR---VHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNLDDEAF 384
Cdd:PLN03077  194 LRTCGGIPDLARgreVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 385 KLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWR-NLIVDNAVVHFYAKCGNISSAFRAFDCMAERD 463
Cdd:PLN03077  274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAvDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 464 VICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDM 543
Cdd:PLN03077  354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 544 YAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKrIHVNKLTVLSVLMACGTIKSLLFGREVH 623
Cdd:PLN03077  434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH 512

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 624 AQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPfRDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYT 703
Cdd:PLN03077  513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1590643556 704 YSSALKACAELEAPIQG-KLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMP 763
Cdd:PLN03077  592 FISLLCACSRSGMVTQGlEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 317-610 7.14e-50

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 187.39  E-value: 7.14e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 317 VGRVHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVP 396
Cdd:PLN03081  142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 397 ANSKMFVCIMNLCGRRVDLELGKQIHARILKS-RWRNLIVDNAVVHFYAKCGNISSAFRAFDCMAERDVICWTTMITACS 475
Cdd:PLN03081  222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTgVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 476 QQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKV 555
Cdd:PLN03081  302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1590643556 556 VFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMAC 610
Cdd:PLN03081  382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
PLN03077 PLN03077
Protein ECB2; Provisional
 482-815 1.70e-48

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 185.05  E-value: 1.70e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 482 EALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMR 561
Cdd:PLN03077   69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 562 IRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTL 641
Cdd:PLN03077  149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 642 VWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAELEAPIQGK 721
Cdd:PLN03077  229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 722 LIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVD 801
Cdd:PLN03077  309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

                         330
                  ....*....|....
gi 1590643556 802 DYIHTTVISACGGV 815
Cdd:PLN03077  389 EITIASVLSACACL 402
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 354-712 5.69e-48

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 181.99  E-value: 5.69e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 354 RVFDGMSRKNTVTWTAIIDGYLKFNLDDEAFKLFQdCVKHGVP--ANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWR 431
Cdd:PLN03081   77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFE-ILEAGCPftLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 432 -NLIVDNAVVHFYAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACG 510
Cdd:PLN03081  156 pDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 511 ENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRL 590
Cdd:PLN03081  236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 591 MKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWT 670
Cdd:PLN03081  316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1590643556 671 AIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACA 712
Cdd:PLN03081  396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 506-818 3.92e-46

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 176.21  E-value: 3.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 506 LKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEAT 585
Cdd:PLN03081  130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAF 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 586 SFFRLMKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRD 665
Cdd:PLN03081  210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 666 VVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYM 745
Cdd:PLN03081  290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1590643556 746 YSKCGYVADAFQVFDNMPERNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISAC---GGVEHG 818
Cdd:PLN03081  370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACrysGLSEQG 445
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 548-817 2.47e-35

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 143.47  E-value: 2.47e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 548 GVMVDSKVVFDRMRIRNT-ATWTSIISGYARNGFGEEATSFFRLMKMK-RIHVNKLTVLSVLMACGTIKSLLFGREVHAQ 625
Cdd:PLN03081   69 EVSESKDARLDDTQIRKSgVSLCSQIEKLVACGRHREALELFEILEAGcPFTLPASTYDALVEACIALKSIRCVKAVYWH 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 626 IIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYS 705
Cdd:PLN03081  149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 706 SALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYARNGHARE 785
Cdd:PLN03081  229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1590643556 786 ALKLMHRMQAEGFVVDDYIHTTVISAC---GGVEH 817
Cdd:PLN03081  309 ALCLYYEMRDSGVSIDQFTFSIMIRIFsrlALLEH 343
PLN03077 PLN03077
Protein ECB2; Provisional
 335-574 7.65e-23

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 104.55  E-value: 7.65e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 335 VDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVPaNSKMFVCIMNLCGRRVD 414
Cdd:PLN03077  426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGA 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 415 LELGKQIHARILKSRW-RNLIVDNAVVHFYAKCGNISSAFRAFdCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSD 493
Cdd:PLN03077  505 LMCGKEIHAHVLRTGIgFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556 494 GFYPNEYTICSALKACGENKALKFGTQL-HGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIR-NTATWTSI 571
Cdd:PLN03077  584 GVNPDEVTFISLLCACSRSGMVTQGLEYfHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITpDPAVWGAL 663


                  ...
gi 1590643556 572 ISG 574
Cdd:PLN03077  664 LNA 666
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 664-712 8.29e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 8.29e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1590643556 664 RDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACA 712
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 448-812 6.63e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.42  E-value: 6.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  448 NISSAFRAFDCMAER----DVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGE--NKALKFGTql 521
Cdd:PLN03218   452 DIDGALRVLRLVQEAglkaDCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARagQVAKAFGA-- 529

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  522 HGAIIKKICKSDvfigtslvdmyakcgvmvdsKVVFDrmrirntatwtSIISGYARNGFGEEAtsFFRLMKMKR----IH 597
Cdd:PLN03218   530 YGIMRSKNVKPD--------------------RVVFN-----------ALISACGQSGAVDRA--FDVLAEMKAethpID 576

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  598 VNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDV----VSWTAII 673
Cdd:PLN03218   577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALV 656

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  674 SGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAELEApiQGKLIHSY----ASK-TPASSNVfvnSALIYMYSK 748
Cdd:PLN03218   657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WKKALELYedikSIKlRPTVSTM---NALITALCE 731

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1590643556  749 CGYVADAFQVFDNMPER----NVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISAC 812
Cdd:PLN03218   732 GNQLPKALEVLSEMKRLglcpNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 646-812 1.37e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 55.65  E-value: 1.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  646 CKCKEYSYAFKVLQYMPFR----DVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAelEAPIQGK 721
Cdd:PLN03218   448 ASSQDIDGALRVLRLVQEAglkaDCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA--RAGQVAK 525

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  722 LIHSYA---SKTPASSNVFVNsALIYMYSKCGYVADAFQVFDNM--------PERnvVSWESMILAYARNGH---AREAL 787
Cdd:PLN03218   526 AFGAYGimrSKNVKPDRVVFN-ALISACGQSGAVDRAFDVLAEMkaethpidPDH--ITVGALMKACANAGQvdrAKEVY 602

                          170       180
                   ....*....|....*....|....*
gi 1590643556  788 KLMHRMQAEGFVVddyIHTTVISAC 812
Cdd:PLN03218   603 QMIHEYNIKGTPE---VYTIAVNSC 624
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 440-711 4.94e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 53.73  E-value: 4.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  440 VHFY-------AKCGNISSAFRAFDCMAERDV----ICWTTMITACSQQGFGHEALSMLSQMLSDG--FYPNEYTICSAL 506
Cdd:PLN03218   507 VHTFgalidgcARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALM 586

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  507 KACgenkalkfgtqlhgaiikkicksdvfigtslvdmyAKCGVMVDSKVVFDRMR---IRNT-ATWTSIISGYARNGFGE 582
Cdd:PLN03218   587 KAC-----------------------------------ANAGQVDRAKEVYQMIHeynIKGTpEVYTIAVNSCSQKGDWD 631

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590643556  583 EATSFFRLMKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQ--- 659
Cdd:PLN03218   632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEdik 711

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1590643556  660 YMPFRDVVS-WTAIISG-CARLGLEhEALEFLQEMMEEGVLPNSYTYSSALKAC 711
Cdd:PLN03218   712 SIKLRPTVStMNALITAlCEGNQLP-KALEVLSEMKRLGLCPNTITYSILLVAS 764
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 765-812 1.04e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.20  E-value: 1.04e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1590643556 765 RNVVSWESMILAYARNGHAREALKLMHRMQAEGFVVDDYIHTTVISAC 812
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 462-509 2.01e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.43  E-value: 2.01e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1590643556 462 RDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKAC 509
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 362-409 4.28e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.28  E-value: 4.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1590643556 362 KNTVTWTAIIDGYLKFNLDDEAFKLFQDCVKHGVPANSKMFVCIMN-LC 409
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINgLC 49
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 665-711 5.46e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.66  E-value: 5.46e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1590643556 665 DVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKAC 711
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 667-701 9.39e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.39e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1590643556 667 VSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNS 701
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 667-697 1.04e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.84  E-value: 1.04e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1590643556 667 VSWTAIISGCARLGLEHEALEFLQEMMEEGV 697
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 567-596 2.87e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.87e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1590643556 567 TWTSIISGYARNGFGEEATSFFRLMKMKRI 596
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 332-376 5.14e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 5.14e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1590643556 332 VTYvdNNLICSYLRLGKLAQARRVFDGMSRK----NTVTWTAIIDGYLK 376
Cdd:pfam13041   4 VTY--NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 465-499 2.07e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 2.07e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1590643556 465 ICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNE 499
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 768-798 2.69e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 2.69e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1590643556 768 VSWESMILAYARNGHAREALKLMHRMQAEGF 798
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 768-802 3.04e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.04e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1590643556 768 VSWESMILAYARNGHAREALKLMHRMQAEGFVVDD 802
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 465-495 5.14e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 5.14e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1590643556 465 ICWTTMITACSQQGFGHEALSMLSQMLSDGF 495
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 563-602 8.82e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 8.82e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1590643556 563 RNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLT 602
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 365-395 1.88e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.29  E-value: 1.88e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1590643556 365 VTWTAIIDGYLKFNLDDEAFKLFQDCVKHGV 395
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 567-599 2.07e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.07e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1590643556 567 TWTSIISGYARNGFGEEATSFFRLMKMKRIHVN 599
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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