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Conserved domains on  [gi|159031962|dbj|BAF91757|]
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polyprotein, partial [Hepacivirus hominis]

Protein Classification

HCV_capsid domain-containing protein( domain architecture ID 10479862)

HCV_capsid domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HCV_capsid pfam01543
Hepatitis C virus capsid protein;
2-98 3.75e-46

Hepatitis C virus capsid protein;


:

Pssm-ID: 144947  Cd Length: 121  Bit Score: 144.45  E-value: 3.75e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159031962    2 STLPKPQRQTKRNTTRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERHQPIPKARPREGRSWLSLGT 81
Cdd:pfam01543   1 STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARPPEGRSWLSPGT 80

                          90
                  ....*....|....*..
gi 159031962   82 LGPSTGMRAVVGQDGFC 98
Cdd:pfam01543  81 LGPSTAMRALYGNDGSC 97
 
Name Accession Description Interval E-value
HCV_capsid pfam01543
Hepatitis C virus capsid protein;
2-98 3.75e-46

Hepatitis C virus capsid protein;


Pssm-ID: 144947  Cd Length: 121  Bit Score: 144.45  E-value: 3.75e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159031962    2 STLPKPQRQTKRNTTRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERHQPIPKARPREGRSWLSLGT 81
Cdd:pfam01543   1 STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARPPEGRSWLSPGT 80

                          90
                  ....*....|....*..
gi 159031962   82 LGPSTGMRAVVGQDGFC 98
Cdd:pfam01543  81 LGPSTAMRALYGNDGSC 97
 
Name Accession Description Interval E-value
HCV_capsid pfam01543
Hepatitis C virus capsid protein;
2-98 3.75e-46

Hepatitis C virus capsid protein;


Pssm-ID: 144947  Cd Length: 121  Bit Score: 144.45  E-value: 3.75e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159031962    2 STLPKPQRQTKRNTTRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERHQPIPKARPREGRSWLSLGT 81
Cdd:pfam01543   1 STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARPPEGRSWLSPGT 80

                          90
                  ....*....|....*..
gi 159031962   82 LGPSTGMRAVVGQDGFC 98
Cdd:pfam01543  81 LGPSTAMRALYGNDGSC 97
HCV_core pfam01542
Hepatitis C virus core protein; The viral core protein forms the internal viral coat that ...
 1-75 1.24e-20

Hepatitis C virus core protein; The viral core protein forms the internal viral coat that encapsidates the genomic RNA and is enveloped in a host cell-derived lipid membrane. The core protein has been shown, by yeast two-hybrid assay to interact with cellular DEAD box helicases. The N terminus of the core protein is involved in transcriptional repression.


Pssm-ID: 460245  Cd Length: 75  Bit Score: 78.57  E-value: 1.24e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 159031962    1 MSTLPKPQRQTKRNTTRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERHQPIPKARPREGRS 75
Cdd:pfam01542   1 MRNLGKPIDKLKCGFADLMGDIKFPGAGLGGAARALAHGRGPLEDGRATAKGNEPGCPFGIFLLALKACLPEGAS 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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