|
Name |
Accession |
Description |
Interval |
E-value |
| SpoVB |
COG5841 |
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle ... |
12-527 |
6.75e-138 |
|
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444543 [Multi-domain] Cd Length: 532 Bit Score: 409.17 E-value: 6.75e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 12 IWQGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNH----HTIL 87
Cdd:COG5841 6 FLKGALILTAAGLISKILGAIYRIPLQNIIGDEGFGLYQMAYPIYGLFLTLATAGIPVAISKLVAEYNALGDykgaRRIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 88 KISALFLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRV 166
Cdd:COG5841 86 RVSLLLLLILGLVFFLLLFFGAPFIArLLLGDPRAYYSLRALAPALLIVPVMSVLRGYFQGLQNMTPTAVSQVIEQIVRV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 167 AVLLGLSFWLVKKGasLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQ---NENVITTKELTKKLLLYSVTIC 243
Cdd:COG5841 166 IFILLLAYLLLPYG--LEYAAAGATFGAVIGALAGLLVLLYYYRKRKKKLKRLLEkskTKSKESSKDILKELLRIAIPIT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 244 VSSLLLLFIQLVDALNLY-ALLSGGEASEEAKRLKGIYD-RGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKI 321
Cdd:COG5841 244 LSSLVLPLFQLIDSFTVPrRLQAAGLSASEATSLYGILSgMAQPLVNLPTVLATALATSLVPAISEAFAKKDRKLVRRRI 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 322 TSSLKLCLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKW 401
Cdd:COG5841 324 NQALRLTLLIGLPAAVGLAVLAEPINTLLFGNPEGGGILAILAPSAIFLSLQQVTTGILQGLGKQKIPVINLLIGLLVKI 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 402 VLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLD-KLRGVLIPIIGSALLMSAVLLAYTRLWTFLFPaTGRGA 480
Cdd:COG5841 404 ILNYLLVPLFGIYGAALATVIGYLVAAILNLAALKKYTGFKlDLRRRLLKPLLASLIMGIVVLLLYRLLSLFLP-ESRLG 482
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1589799648 481 AVIESLSAVAIGGAVFIYCMMRLGIFTDEELNSVPF-GSKLSKFMRRR 527
Cdd:COG5841 483 ALLATLIAVLVGAIVYLLLLLKLGLITKEELRRLPKgGKKLARLLRKL 530
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
17-438 |
1.29e-124 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 371.80 E-value: 1.29e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 17 FVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYS----EKNHHTILKISAL 92
Cdd:cd13124 1 LILTIAGLISKILGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIPVAISKLVAEYNalgdYKGARRIFRVSLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 93 FLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLLG 171
Cdd:cd13124 81 LLLILGLVFFLLLFFGAPFLAqLLLGDPRLAPVIRALAPAILIVPLLSVLRGYFQGLQNMTPTAVSQVIEQIVRVIVILV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 172 LSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQ--NENVITTKELTKKLLLYSVTICVSSLLL 249
Cdd:cd13124 161 LAYLLLPVGGGLYYAAAGATFGAVIGALAGLLVLLYYYRKKRRELKRLLRksPRSKISTKEILKELLSYAIPITLSSLIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 250 LFIQLVDALNLY-ALLSGGEASEEAKRLKGIY-DRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKL 327
Cdd:cd13124 241 PLLQLIDSFTVPrRLQAAGLSESEATALYGILtGRAQPLVQLPTVIATALSTSLVPAISEAYAKGDKKELRRRINQALRL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 328 CLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLL 407
Cdd:cd13124 321 TLLIGLPAAVGLAVLAEPINTLLFGDSEGGLILQILAPSILFLSLQQVTAAILQGLGKVKIPVINLLIGLLVKIVLNYVL 400
|
410 420 430
....*....|....*....|....*....|.
gi 1589799648 408 VPRYGIEGASLATAASFAAVAGLNLYQLRQK 438
Cdd:cd13124 401 IPIFGIYGAAIATVIGFLVAALLNLRALKKL 431
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
12-307 |
1.21e-41 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 150.53 E-value: 1.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 12 IWQGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEK-NHHTILKIS 90
Cdd:pfam01943 1 LLKNVIVLLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREKyELVSLYWLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 91 ALFLSLIGILLFLCLYLgavpIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLL 170
Cdd:pfam01943 81 ALLVKLVLVLLFLLLPL----IAAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 171 GLSFWLVKKgasLYTAGAAAASGSLAGSLVALIILGFFWFKTKrdnqtdrqnenVITTKELTKKLLLYSVTICVSSLLLL 250
Cdd:pfam01943 157 FIAVFLPGD---IVAALLYQVLAALVGGIIALAVLRKIFRPRF-----------VFPSLKLVRKLLSFGAPLFISSLAIS 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1589799648 251 FIQLVDALnLYALLSGGEAseeakrlKGIYDRGQPLLQLGSVFAVSIATS-LVPYISM 307
Cdd:pfam01943 223 LYTYIDSI-LLGLLLGAGA-------VGIYNAAYQLLVAIQGLLNPIVTAvLFPVFSK 272
|
|
| spore_V_B |
TIGR02900 |
stage V sporulation protein B; SpoVB is the stage V sporulation protein B of the bacterial ... |
14-438 |
1.54e-31 |
|
stage V sporulation protein B; SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. [Cellular processes, Sporulation and germination]
Pssm-ID: 274343 [Multi-domain] Cd Length: 488 Bit Score: 127.41 E-value: 1.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 14 QGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHT----ILKI 89
Cdd:TIGR02900 3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKnikkILKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 90 SALFLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAV 168
Cdd:TIGR02900 83 SLIFTLIWSLIVTAIVFLLSPFIAsTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 169 LLGLSFWLvkKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQNENVITTKELTKKLLLYSVTICVSSLL 248
Cdd:TIGR02900 163 VALLISAF--LPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 249 LLFIQLVDALNL-YALLSGGEASEEAKRLKGIYD-RGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLK 326
Cdd:TIGR02900 241 GSLLYFLETLLVpQRLVIAGVTYREATSLYGKLSgMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 327 LCLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGY--TVFPAIAVGAGVAVKWVLN 404
Cdd:TIGR02900 321 ISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQSILQGLGKqkVALRNSLIGAIVKIILLFV 400
|
410 420 430
....*....|....*....|....*....|....
gi 1589799648 405 TLLVPRYGIEGASLATAASFAAVAGLNLYQLRQK 438
Cdd:TIGR02900 401 LTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoVB |
COG5841 |
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle ... |
12-527 |
6.75e-138 |
|
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444543 [Multi-domain] Cd Length: 532 Bit Score: 409.17 E-value: 6.75e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 12 IWQGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNH----HTIL 87
Cdd:COG5841 6 FLKGALILTAAGLISKILGAIYRIPLQNIIGDEGFGLYQMAYPIYGLFLTLATAGIPVAISKLVAEYNALGDykgaRRIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 88 KISALFLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRV 166
Cdd:COG5841 86 RVSLLLLLILGLVFFLLLFFGAPFIArLLLGDPRAYYSLRALAPALLIVPVMSVLRGYFQGLQNMTPTAVSQVIEQIVRV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 167 AVLLGLSFWLVKKGasLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQ---NENVITTKELTKKLLLYSVTIC 243
Cdd:COG5841 166 IFILLLAYLLLPYG--LEYAAAGATFGAVIGALAGLLVLLYYYRKRKKKLKRLLEkskTKSKESSKDILKELLRIAIPIT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 244 VSSLLLLFIQLVDALNLY-ALLSGGEASEEAKRLKGIYD-RGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKI 321
Cdd:COG5841 244 LSSLVLPLFQLIDSFTVPrRLQAAGLSASEATSLYGILSgMAQPLVNLPTVLATALATSLVPAISEAFAKKDRKLVRRRI 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 322 TSSLKLCLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKW 401
Cdd:COG5841 324 NQALRLTLLIGLPAAVGLAVLAEPINTLLFGNPEGGGILAILAPSAIFLSLQQVTTGILQGLGKQKIPVINLLIGLLVKI 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 402 VLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLD-KLRGVLIPIIGSALLMSAVLLAYTRLWTFLFPaTGRGA 480
Cdd:COG5841 404 ILNYLLVPLFGIYGAALATVIGYLVAAILNLAALKKYTGFKlDLRRRLLKPLLASLIMGIVVLLLYRLLSLFLP-ESRLG 482
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1589799648 481 AVIESLSAVAIGGAVFIYCMMRLGIFTDEELNSVPF-GSKLSKFMRRR 527
Cdd:COG5841 483 ALLATLIAVLVGAIVYLLLLLKLGLITKEELRRLPKgGKKLARLLRKL 530
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
17-438 |
1.29e-124 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 371.80 E-value: 1.29e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 17 FVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYS----EKNHHTILKISAL 92
Cdd:cd13124 1 LILTIAGLISKILGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIPVAISKLVAEYNalgdYKGARRIFRVSLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 93 FLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLLG 171
Cdd:cd13124 81 LLLILGLVFFLLLFFGAPFLAqLLLGDPRLAPVIRALAPAILIVPLLSVLRGYFQGLQNMTPTAVSQVIEQIVRVIVILV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 172 LSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQ--NENVITTKELTKKLLLYSVTICVSSLLL 249
Cdd:cd13124 161 LAYLLLPVGGGLYYAAAGATFGAVIGALAGLLVLLYYYRKKRRELKRLLRksPRSKISTKEILKELLSYAIPITLSSLIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 250 LFIQLVDALNLY-ALLSGGEASEEAKRLKGIY-DRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKL 327
Cdd:cd13124 241 PLLQLIDSFTVPrRLQAAGLSESEATALYGILtGRAQPLVQLPTVIATALSTSLVPAISEAYAKGDKKELRRRINQALRL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 328 CLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLL 407
Cdd:cd13124 321 TLLIGLPAAVGLAVLAEPINTLLFGDSEGGLILQILAPSILFLSLQQVTAAILQGLGKVKIPVINLLIGLLVKIVLNYVL 400
|
410 420 430
....*....|....*....|....*....|.
gi 1589799648 408 VPRYGIEGASLATAASFAAVAGLNLYQLRQK 438
Cdd:cd13124 401 IPIFGIYGAAIATVIGFLVAALLNLRALKKL 431
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
12-307 |
1.21e-41 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 150.53 E-value: 1.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 12 IWQGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEK-NHHTILKIS 90
Cdd:pfam01943 1 LLKNVIVLLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREKyELVSLYWLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 91 ALFLSLIGILLFLCLYLgavpIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLL 170
Cdd:pfam01943 81 ALLVKLVLVLLFLLLPL----IAAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 171 GLSFWLVKKgasLYTAGAAAASGSLAGSLVALIILGFFWFKTKrdnqtdrqnenVITTKELTKKLLLYSVTICVSSLLLL 250
Cdd:pfam01943 157 FIAVFLPGD---IVAALLYQVLAALVGGIIALAVLRKIFRPRF-----------VFPSLKLVRKLLSFGAPLFISSLAIS 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1589799648 251 FIQLVDALnLYALLSGGEAseeakrlKGIYDRGQPLLQLGSVFAVSIATS-LVPYISM 307
Cdd:pfam01943 223 LYTYIDSI-LLGLLLGAGA-------VGIYNAAYQLLVAIQGLLNPIVTAvLFPVFSK 272
|
|
| spore_V_B |
TIGR02900 |
stage V sporulation protein B; SpoVB is the stage V sporulation protein B of the bacterial ... |
14-438 |
1.54e-31 |
|
stage V sporulation protein B; SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. [Cellular processes, Sporulation and germination]
Pssm-ID: 274343 [Multi-domain] Cd Length: 488 Bit Score: 127.41 E-value: 1.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 14 QGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHT----ILKI 89
Cdd:TIGR02900 3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKnikkILKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 90 SALFLSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAV 168
Cdd:TIGR02900 83 SLIFTLIWSLIVTAIVFLLSPFIAsTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 169 LLGLSFWLvkKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQTDRQNENVITTKELTKKLLLYSVTICVSSLL 248
Cdd:TIGR02900 163 VALLISAF--LPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 249 LLFIQLVDALNL-YALLSGGEASEEAKRLKGIYD-RGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLK 326
Cdd:TIGR02900 241 GSLLYFLETLLVpQRLVIAGVTYREATSLYGKLSgMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 327 LCLVLGTGASVGLICILKPVNIMLFQNGEGTGALQVFSCSILFASMAVTAAAVLQGAGY--TVFPAIAVGAGVAVKWVLN 404
Cdd:TIGR02900 321 ISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQSILQGLGKqkVALRNSLIGAIVKIILLFV 400
|
410 420 430
....*....|....*....|....*....|....
gi 1589799648 405 TLLVPRYGIEGASLATAASFAAVAGLNLYQLRQK 438
Cdd:TIGR02900 401 LTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434
|
|
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
15-418 |
8.89e-27 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 112.25 E-value: 8.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 15 GAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALFL 94
Cdd:cd13128 4 NSGWLFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVREIARYRKEKIREIISTSLVLK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 95 SLIGILLFLCLYLGAVPIALfmGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLrvavLLGLSF 174
Cdd:cd13128 84 LILGILALLLLFLFAFLIAF--YDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVL----SLILAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 175 WLVKKGASLYtagaaAASGSLAGSLVALIILGFFWFKTKRDNqtdrqNENVITTKELTKKLLLYSVTICVSSLLLLFIQL 254
Cdd:cd13128 158 ILVLLGGGLI-----GFALAYLIASVLSAILLLYIYRKKILL-----PKFFSFDLKLAKELLRFSIPLALSGIFSLIYTR 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 255 VDALNLYALLSGGEAseeakrlkGIYDRGQPLLQLGSVFAVSIATSLVPYISMAvKNKELKIMKEKITSSLKLCLVLGTG 334
Cdd:cd13128 228 IDTIMLGYFLGDAAV--------GIYNAAYRIAELLLFIPSAISTALFPRISEL-YKNDKDELKKLLKKSFKYLFLISLP 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 335 ASVGLICILKPVNIMLF--QNGEGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLVPRYG 412
Cdd:cd13128 299 IAIGLFLFAEPIITLLFgeEYLPAALVLQILAWGFLFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLLIPKYG 378
|
....*.
gi 1589799648 413 IEGASL 418
Cdd:cd13128 379 IIGAAI 384
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
12-418 |
1.43e-21 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 96.17 E-value: 1.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 12 IWQGAFVLILAGIITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISA 91
Cdd:COG2244 4 LLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEELRRLLSTAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 92 LFLSLIGILLFLCLYLGAVPIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLLG 171
Cdd:COG2244 84 LLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLLALL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 172 LsfwlvkkgaslytagaaaasgslagslvALIILGFFWFktkrdnqtdrqnenvittkeltkkLLLYSVTICVSSLLLLF 251
Cdd:COG2244 164 L----------------------------ALLGLGLWGL------------------------VLKYSLPLLLSGLLGLL 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 252 IQLVDALNLYALLSGGEAseeakrlkGIYDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVL 331
Cdd:COG2244 192 LTNLDRLLLGALLGPAAV--------GIYSAAYRLASLLLLLITALSQVLFPRLSRLLAEGDREELRRLYRKALRLLLLL 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 332 GTGASVGLICILKPVNIMLFQNG--EGTGALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLVP 409
Cdd:COG2244 264 GLPLALGLALLAPPLLSLLFGPEyaEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIP 343
|
....*....
gi 1589799648 410 RYGIEGASL 418
Cdd:COG2244 344 RYGLVGAAI 352
|
|
| Polysacc_synt_C |
pfam14667 |
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral ... |
359-505 |
4.30e-16 |
|
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral membrane region of polysaccharide biosynthesis proteins.
Pssm-ID: 434111 [Multi-domain] Cd Length: 141 Bit Score: 75.30 E-value: 4.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 359 ALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQK 438
Cdd:pfam14667 1 VLQILALSIIFLSLSTVLTSILQGLGRTKLALIALLIGALVKLILNLLLIPLFGIVGAAIATVISLLVVALLNLYYLRRY 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589799648 439 EWLDKLRGVLIPIIGSALLMSAVLLAYTRLWTFLFPATgrgaavIESLSAVAIGGAVFIYCMMRLGI 505
Cdd:pfam14667 81 LGLRLLLRRLLKPLLAALVMGIVVYLLLLLLGLLLGLA------LALLLAVLVGALVYLLLLLLLKL 141
|
|
| MurJ |
COG0728 |
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope ... |
291-505 |
2.02e-15 |
|
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440492 [Multi-domain] Cd Length: 503 Bit Score: 78.65 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 291 SVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASVGLICILKPVNIMLFQNGEGT--------GALQV 362
Cdd:COG0728 272 GLFGVAIGTALLPRLSRAAAAGDLEEFRRTLSRGLRLVLLLTLPAAVGLIVLAEPIVRLLFERGAFTaedtaltaLALAA 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 363 FSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLD 442
Cdd:COG0728 352 YALGLPAFALVKVLARAFYARQDTRTPVRIAVIAVVVNIVLNLLLVPPLGHAGLALATSLSALVNALLLLVLLRRRLGGL 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1589799648 443 KLRGVLIP---IIGSALLMSAVLLAYTRLWTFLFPaTGRGAAVIESLSAVAIGGAVFIYCMMRLGI 505
Cdd:COG0728 432 PLRGILRTllkLLLASLVMGAVLWLLLRLLGDWLG-GGLLGRLLALALLILVGAAVYFALLLLLGV 496
|
|
| MATE_MurJ_like |
cd13123 |
MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
291-418 |
9.56e-09 |
|
MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240528 [Multi-domain] Cd Length: 420 Bit Score: 57.46 E-value: 9.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 291 SVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASVGLICILKPVNIMLFQNGEGT--------GALQV 362
Cdd:cd13123 265 GIFGVAIATALLPRLSRLAAAGDLDEFRRTLSRGLRLVLFLLLPAAVGLIVLAEPIVRLLFERGAFTaedtlmtaSALAA 344
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 363 FSCSILFASMavtaAAVLQGAGY----TVFPAIAVGAGVAVKWVLNTLLVPRYGIEGASL 418
Cdd:cd13123 345 YALGLPAFAL----VKLLSRAFYalkdTKTPVKIAVIAVAVNILLNLLLIKPLGHVGLAL 400
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
45-393 |
1.69e-04 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 44.24 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 45 GFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALFLSLIGILLFLCLYLGAVPIALFMGDSHL--- 121
Cdd:cd12082 32 AVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEvie 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 122 --AVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVavllGLSFWLVKKGASLYTAGAAAASGSLAGSL 199
Cdd:cd12082 112 laATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNI----LLDPLLIFGLGPPELGIAGAALATVISYV 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 200 VALIILGFFWFKTKRDNQTDRqnENVITTKELTKKLLLYSVTICVSSLLLLFIQLVDAlNLYALLSGGEASeeakrlkGI 279
Cdd:cd12082 188 IGALLLLIYLRKGKKILKFKL--SLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIV-AIVAAFGGAAAL-------AA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 280 YDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASVgLICILKPVNIMLFQNGEGTGA 359
Cdd:cd12082 258 YTVAFRIASLAFMPALGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGL-LILLFPEPILSLFTNDPEFLE 336
|
330 340 350
....*....|....*....|....*....|....*....
gi 1589799648 360 -----LQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAV 393
Cdd:cd12082 337 lavsyLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVS 375
|
|
| NorM |
COG0534 |
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms]; |
285-416 |
3.38e-04 |
|
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
Pssm-ID: 440300 [Multi-domain] Cd Length: 427 Bit Score: 43.21 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 285 PLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASVGLICILKPVNIMLFQNGE----GTGAL 360
Cdd:COG0534 51 PIFFLLIALGIGLGVGGTALVAQALGAGDREEARRVLGQALLLALLLGLLLTLLGLLFAPPLLRLLGADPEvlalARDYL 130
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1589799648 361 QVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLV--PRYGIEGA 416
Cdd:COG0534 131 RIILLGLPFLLLFNVLNGILRGLGDTKTPMIIMLIGNVLNIVLDPLLIfgGGLGVAGA 188
|
|
| MATE_yoeA_like |
cd13138 |
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ... |
231-418 |
4.03e-04 |
|
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240543 [Multi-domain] Cd Length: 431 Bit Score: 42.83 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 231 LTKKLLLYSVTICVSSLLLLFIQLVDALNLYALLSGGEASEEAKrlkgiydrGQPLLQLGSVFAVSIATSLVPYISMAVK 310
Cdd:cd13138 1 ILKTLLLFALPLLLSNLLQQLYNLVDLLIVGQFLGVAALAAVSN--------GSPIIFLLTAIGMGLSMGGTILISQYIG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 311 NKELKIMKEKITSSLKLCLVLGTGASVGLICILKPVNIMLFQNGE----GTGALQVFSCSILFASMAVTAAAVLQGAGYT 386
Cdd:cd13138 73 AKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEilelAVSYLRICFLGIPFIFGYNAYSAILRGLGDS 152
|
170 180 190
....*....|....*....|....*....|....
gi 1589799648 387 VFPAIAVGAGVAVKWVLNTLLV--PRYGIEGASL 418
Cdd:cd13138 153 KTPLYFVIIACVLNIILDLLFIavFHMGVAGAAL 186
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
52-408 |
8.97e-04 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 41.70 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 52 VYPFLGIAVMLSTSGF-PVIISKLMNDYSEKNhhtilkiSALFLSL-IGILLFLCLYLGAVPIALFMGDSHLAVLIQVAA 129
Cdd:cd13127 41 ATVFIAFAQLFSDLGLsSALIQRKDLTEEDLS-------TVFWLNLlLGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLS 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 130 YAFLLFPFV----ALLRGGFQGRHEMLPSALSQMTEQFLRV-AVLLGLSFW-LVkkgaslytagaAAASGSLAGSLVALI 203
Cdd:cd13127 114 LSFLLSGLGsvprALLQRELRFKKLAIIELISTLVSGVVAIvLALLGFGVWaLV-----------AQQLVGALVSTVLLW 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 204 ILGFFWFKTKRDnqtdrqnenvittKELTKKLLLYSVTICVSSLLLLFIQlvdalNLYALLSGGEASEEAkrLkGIYDRG 283
Cdd:cd13127 183 ILSRWRPRLSFS-------------LASLKELLSFGSKLLGSNLLNYFSR-----NLDNLIIGKFLGAAA--L-GYYSRA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 284 QPLLQLG-SVFAVSIATSLVPYISMAVKNKELkiMKEKITSSLKLCLVLGTGASVGLICILKP-VNIMLFQNGEGTGA-L 360
Cdd:cd13127 242 YRLALLPvQNITGPITRVLFPALSRLQDDPER--LRRAYLKALRLLALITFPLMVGLALLAEPlVLLLLGEKWLPAVPiL 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1589799648 361 QVFSCSILFASMAVTAAAVLQGAGYT-------------VFPAIAVGA-----GVAVKWVLNTLLV 408
Cdd:cd13127 320 QILALAGLFQPLSSLNGSLLLALGRTdlllklglikavlTVLALLIGIpygiiGVAIAYVIASLLS 385
|
|
| MATE_NorM_like |
cd13137 |
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ... |
283-445 |
9.78e-04 |
|
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240542 [Multi-domain] Cd Length: 432 Bit Score: 41.73 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 283 GQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASVGLICILKPVnIMLFQNGE-----GT 357
Cdd:cd13137 42 ATQVLWLLLVLNMALGTGTVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPL-LRLLGADPevialAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 358 GALQVFSCSILFASMAVTAAAVLQGAGYTVFPAIAVGAGVAVKWVLNTLLV------PRYGIEGASLATAASFAAVAGLN 431
Cdd:cd13137 121 TYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIfglwgfPGLGVAGAALATVISRVVGALLL 200
|
170
....*....|....
gi 1589799648 432 LYQLRQKEWLDKLR 445
Cdd:cd13137 201 LFLLLRGRLPIKIS 214
|
|
| MATE_like_10 |
cd13125 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
17-418 |
3.58e-03 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240530 [Multi-domain] Cd Length: 409 Bit Score: 39.83 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 17 FVLILAG-IITKILsAVYrvpfqniVGDVGFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALF-- 93
Cdd:cd13125 11 LIKILAGlIINKVV-AVY-------LGPSGVALLGQLQNFVTILQTIAGGGINNGVVKYTAEYKDDEEKLARVWSTAFri 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 94 LSLIGILLFLCLYLGAVPIA-LFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLLGL 172
Cdd:cd13125 83 TLILSILGGLLLLLFSKPLSsLLFGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 173 SFWLVKKGASLYTAGAaaasgslagslVALIILGFFWFKTKRDNQTDRQNENVITtKELTKKLLLYSVTICVSSLLLLFI 252
Cdd:cd13125 163 VYFYGLKGALLALVLN-----------QSLIFLVTLIYSRKQPWFKLKYLWGRLD-KDIIKKLLKFSLMALVSALSLPLS 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 253 QLVdalnLYALLSGGEASEEAkrlkGIYdrgQPLLQLGSV----FAVSIATSLVPYISMAVKNKELKIMkekITSSLKLc 328
Cdd:cd13125 231 QII----VRNILIRQLGWEAA----GYW---QAVWKISDVylgfITTALSTYYLPRLSAIKDNKELKRE---VNKQLKV- 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589799648 329 LVLGTGASVGLICILKPVNIMLFQNGEGTGA-----LQVFSCSILFASMAVtaAAVLQGAGYTVFPAIAVGAGVAVKWVL 403
Cdd:cd13125 296 ILPLVAIGALLIYLLRDLIIQILFSEEFLPArelflWQLIGDFFKIASWLL--GYILLAKGMTKLFIITEILFALLFVLL 373
|
410
....*....|....*
gi 1589799648 404 NTLLVPRYGIEGASL 418
Cdd:cd13125 374 SLLFIPLFGLEGAGI 388
|
|
| |
