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Conserved domains on  [gi|1584727467|gb|QBH90827|]
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L11L [African swine fever virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ASFV_L11L super family cl05045
African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the ...
 17-93 2.18e-34

African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the African swine fever virus (ASFV) which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic swine.


The actual alignment was detected with superfamily member pfam05293:

Pssm-ID: 114041  Cd Length: 78  Bit Score: 112.70  E-value: 2.18e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1584727467 17 MLEPMLVMAPIPLVLIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWTQLHNITSSIN-ILGNKSFQVQCNK 93
Cdd:pfam05293  1 MLEPILVMAPIPLILIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWQILNNITLPFNnFLGNKSFQVKCKK 78
 
Name Accession Description Interval E-value
ASFV_L11L pfam05293
African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the ...
 17-93 2.18e-34

African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the African swine fever virus (ASFV) which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic swine.


Pssm-ID: 114041  Cd Length: 78  Bit Score: 112.70  E-value: 2.18e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1584727467 17 MLEPMLVMAPIPLVLIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWTQLHNITSSIN-ILGNKSFQVQCNK 93
Cdd:pfam05293  1 MLEPILVMAPIPLILIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWQILNNITLPFNnFLGNKSFQVKCKK 78
 
Name Accession Description Interval E-value
ASFV_L11L pfam05293
African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the ...
 17-93 2.18e-34

African swine fever virus (ASFV) L11L protein; L11L is an integral membrane protein of the African swine fever virus (ASFV) which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic swine.


Pssm-ID: 114041  Cd Length: 78  Bit Score: 112.70  E-value: 2.18e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1584727467 17 MLEPMLVMAPIPLVLIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWTQLHNITSSIN-ILGNKSFQVQCNK 93
Cdd:pfam05293  1 MLEPILVMAPIPLILIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWQILNNITLPFNnFLGNKSFQVKCKK 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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