NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|158431095]
View 

Chain B, 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2

Protein Classification

AMPKBI domain-containing protein( domain architecture ID 10659796)

AMPKBI domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-87 7.08e-41

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


:

Pssm-ID: 214973  Cd Length: 100  Bit Score: 129.36  E-value: 7.08e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158431095     2 GPYGQEMYAFRSEERF---------KSPPILPPHLLQVILNK-DTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSAT 71
Cdd:smart01010   5 ESYTNEIPACFTDDDFieespeekwKEPPALPPHLEKVILNTsSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAVAAT 84

                           90
                   ....*....|....*.
gi 158431095    72 HRYKKKYVTTLLYKPI 87
Cdd:smart01010  85 TRYRGKYVTQVLYKPL 100
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-87 7.08e-41

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 129.36  E-value: 7.08e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158431095     2 GPYGQEMYAFRSEERF---------KSPPILPPHLLQVILNK-DTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSAT 71
Cdd:smart01010   5 ESYTNEIPACFTDDDFieespeekwKEPPALPPHLEKVILNTsSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAVAAT 84

                           90
                   ....*....|....*.
gi 158431095    72 HRYKKKYVTTLLYKPI 87
Cdd:smart01010  85 TRYRGKYVTQVLYKPL 100
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 18-86 1.09e-39

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 125.34  E-value: 1.09e-39
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158431095  18 KSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKP 86
Cdd:pfam04739  2 KEPPALPPHLHLTILNKPSSSSDDPSLLPRPNHVVLNHLYTSSIKDGVLALGTTHRYKSKYVTTVLYKP 70
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-87 7.08e-41

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 129.36  E-value: 7.08e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158431095     2 GPYGQEMYAFRSEERF---------KSPPILPPHLLQVILNK-DTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSAT 71
Cdd:smart01010   5 ESYTNEIPACFTDDDFieespeekwKEPPALPPHLEKVILNTsSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAVAAT 84

                           90
                   ....*....|....*.
gi 158431095    72 HRYKKKYVTTLLYKPI 87
Cdd:smart01010  85 TRYRGKYVTQVLYKPL 100
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 18-86 1.09e-39

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 125.34  E-value: 1.09e-39
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158431095  18 KSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKP 86
Cdd:pfam04739  2 KEPPALPPHLHLTILNKPSSSSDDPSLLPRPNHVVLNHLYTSSIKDGVLALGTTHRYKSKYVTTVLYKP 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH