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Conserved domains on  [gi|1583103308|ref|YP_009555275|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Rattus nitidus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 9.26e-151

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 427.73  E-value: 9.26e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMISHHQNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                  ....*
gi 1583103308 321 KHNFI 325
Cdd:MTH00105  321 KPMTL 325
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 9.26e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 427.73  E-value: 9.26e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMISHHQNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                  ....*
gi 1583103308 321 KHNFI 325
Cdd:MTH00105  321 KPMTL 325
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-300 1.84e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 106.35  E-value: 1.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  22 SSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF--------QHQTSN 92
Cdd:COG1007   120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLagiaaalaAGGANS 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTIT-------TILAISS 161
Cdd:COG1007   200 PLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAVLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 162 VLIGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTFLNLTIYILLTVPMFITLMMNS-----ATTINTLS- 231
Cdd:COG1007   280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgvsAALFYLLAYLFMNLGAFAVILLLSrkggeAEEIEDLAg 359

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 232 LAWnKTPMiLAMASTILLSLGG-LPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSM 300
Cdd:COG1007   360 LAR-RSPL-LALAMTIFLLSLAgIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-325 4.24e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 4.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   6 LIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  85 TF----QHQTSNMLLN--------MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSIL-------YQF 145
Cdd:TIGR01770 184 NFedllLFLSNGMLNIsllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 146 YQLLNPTITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNL---TFLNLTIYILLTVPMFITLMM 221
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 222 ------NSATTINTLSLAWNKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTR 295
Cdd:TIGR01770 344 lrsykdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                         330       340       350
                  ....*....|....*....|....*....|
gi 1583103308 296 LIYSmsltMFPTNNNSKMISHHQNPKHNFI 325
Cdd:TIGR01770 424 VVKV----MYFDKPERRIPSNPQSKAQSLL 449
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.30e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQ-----------HQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  91 SNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILL-TWQKIAPLSI-----LYQFYQLLNPTITTILAISSVLI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAIL----PYNPNLTFLNLTIYILLTVPMF-----ITLMMNSATTINTLSLAWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1583103308 236 KTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTL 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 9.26e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 427.73  E-value: 9.26e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMISHHQNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                  ....*
gi 1583103308 321 KHNFI 325
Cdd:MTH00105  321 KPMTL 325
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-313 7.71e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 329.07  E-value: 7.71e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFyQLLNPTITTILAIS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKM 313
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTT 312
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-325 3.61e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 312.14  E-value: 3.61e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMISHHQNP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                  ....*
gi 1583103308 321 KHNFI 325
Cdd:MTH00112  321 KNTLT 325
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 7.90e-104

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 308.39  E-value: 7.90e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMISHHQNP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                  ....*
gi 1583103308 321 KHNFI 325
Cdd:MTH00070  321 TNNLL 325
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-312 4.12e-82

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 252.97  E-value: 4.12e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSK 312
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMM 312
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-308 8.03e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.14  E-value: 8.03e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTN 308
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQH 308
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-315 3.06e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.09  E-value: 3.06e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYkq 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 sgtwTFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFyqlLNPTITTILAIS 160
Cdd:MTH00160   80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMI 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1583103308 241 LAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMIS 315
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK 307
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 11-313 7.86e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.90  E-value: 7.86e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  11 FTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWtfqhqt 90
Cdd:MTH00144   11 FLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW------ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  91 snMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNP-TITTILAISSVLIGAWGG 169
Cdd:MTH00144   85 --FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 170 LNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSlawNKTPMILAMASTILL 249
Cdd:MTH00144  163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG---SLKPSYKTGLSIISL 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583103308 250 SLGGLPP--LTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKM 313
Cdd:MTH00144  240 LLSLGGLppFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSS 305
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-299 1.62e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.32  E-value: 1.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   5 TLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILnykqsgTW 84
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  85 TFQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAISSVLI 164
Cdd:MTH00011   81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMILAMA 244
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1583103308 245 STILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYS 299
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-315 1.06e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.11  E-value: 1.06e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   8 IIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYkqsgtwtFQ 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  88 HQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQllNPTITTILAISSVLIGAW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 168 GGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPMFITLMMNSATTINTLSLAWNKTPMILAMASTI 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1583103308 248 LLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSMSLTMFPTNNNSKMIS 315
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKIN 300
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-300 2.77e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.45  E-value: 2.77e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  14 LMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF------ 86
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFagiaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  87 --QHQTSNMLL----NMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTITT----- 155
Cdd:PRK05777  193 laDGSGNSLLLlfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLSEdwqqv 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 156 --ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTFLNLTIYILLTVPMFITLMMNS-----A 224
Cdd:PRK05777  273 laIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEgysAVLFYLLAYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1583103308 225 TTINTLS-LAWNKtPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSM 300
Cdd:PRK05777  353 ESISDFAgLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-300 1.84e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 106.35  E-value: 1.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  22 SSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF--------QHQTSN 92
Cdd:COG1007   120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLagiaaalaAGGANS 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTIT-------TILAISS 161
Cdd:COG1007   200 PLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAVLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 162 VLIGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTFLNLTIYILLTVPMFITLMMNS-----ATTINTLS- 231
Cdd:COG1007   280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgvsAALFYLLAYLFMNLGAFAVILLLSrkggeAEEIEDLAg 359

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 232 LAWnKTPMiLAMASTILLSLGG-LPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSM 300
Cdd:COG1007   360 LAR-RSPL-LALAMTIFLLSLAgIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-325 4.24e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 4.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   6 LIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  85 TF----QHQTSNMLLN--------MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSIL-------YQF 145
Cdd:TIGR01770 184 NFedllLFLSNGMLNIsllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 146 YQLLNPTITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNL---TFLNLTIYILLTVPMFITLMM 221
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 222 ------NSATTINTLSLAWNKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTR 295
Cdd:TIGR01770 344 lrsykdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                         330       340       350
                  ....*....|....*....|....*....|
gi 1583103308 296 LIYSmsltMFPTNNNSKMISHHQNPKHNFI 325
Cdd:TIGR01770 424 VVKV----MYFDKPERRIPSNPQSKAQSLL 449
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-298 2.04e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.17  E-value: 2.04e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKK-SPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWT 85
Cdd:MTH00199  100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRdSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  86 FQHQTSNMLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNptITTILAISS 161
Cdd:MTH00199  180 IQGINSILTGDvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 162 VLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPN----LTFLNLTIYILLTVPMF-ITLMMNSATT-INTLSLAWN 235
Cdd:MTH00199  258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFsIILSLKLTKGlIVEVSGLSR 337

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583103308 236 KTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIY 298
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.30e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQ-----------HQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  91 SNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILL-TWQKIAPLSI-----LYQFYQLLNPTITTILAISSVLI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAIL----PYNPNLTFLNLTIYILLTVPMF-----ITLMMNSATTINTLSLAWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1583103308 236 KTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTL 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-297 4.19e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.48  E-value: 4.19e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  13 ILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQHqtS 91
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSY--I 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  92 NMLLN---------------MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYqlLNPTITTI 156
Cdd:MTH00196   80 NLVLNsgqsfssvsvpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIG--LNVNILLI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 157 LAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNP----NLTFLNLTIYILLTVPMFITLMMNSATT--INTL 230
Cdd:MTH00196  158 GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEF 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1583103308 231 SLAWNKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLI 297
Cdd:MTH00196  238 SGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-192 5.19e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 78.65  E-value: 5.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  10 YFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQH- 88
Cdd:COG0651   113 FLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  89 -----QTSNMLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLIL---LTwqKIAPLSILYQFYQLLNPTITT- 155
Cdd:COG0651   193 aarlaELDPGLLLaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLsglLT--KVGVYAILRVLTLLFGADPALf 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1583103308 156 ------ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTA 192
Cdd:COG0651   271 lgtlllVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL 313
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-222 7.08e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 72.34  E-value: 7.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWT 85
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGyTKKDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  86 FQHQTSNMLLNM--------------MLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNP 151
Cdd:CHL00049  194 ELQEIVNGLINTqmynspgisialifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1583103308 152 TITT-------ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNLTFLNLTIYilltvpMFITLMMN 222
Cdd:CHL00049  274 FSSNewhllleILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITY------MLFYIFMN 346
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 23-192 5.07e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 69.72  E-value: 5.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQ----------HQTSN 92
Cdd:COG1008   130 ALDLFLFYVFWELMLIPMYFLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDiaelaaaplpLTAQL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLNMMLISLAMKLGLAPFHYWLPEV-----TQGIPMHIGLILltwqKIA-------PLSILYQFYQLLNPTITtILAIS 160
Cdd:COG1008   210 LLFLAFFIAFAVKVPMFPFHTWLPDAhveapTAGSVLLAGVLL----KMGgygllrfALPLFPEASAYFAPLLA-ALGVI 284

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1583103308 161 SVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTA 192
Cdd:COG1008   285 GIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-190 1.08e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.50  E-value: 1.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   5 TLIIIYFTILMGPVITmssSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGT 83
Cdd:PRK08376  125 TLILLLELGMLGMAIT---GDLFNFFVFLEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGT 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  84 WTFQHQTSNMLLNMMLI----------SLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPTI 153
Cdd:PRK08376  202 LNMAYLAVKMSENPTVVakialalfiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAI 281

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1583103308 154 TT--------ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08376  282 NLatvgwviiILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 2-191 1.35e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 65.35  E-value: 1.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   2 NPITLIIIYFTILMGPVI-TMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:TIGR01972 103 KRVKEFYALLLLLEAGVIgVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFL 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGtWTFQHQTSN----------MLLNMMLISLAMKLGLAPFHYWLPEV-----TQGIPMHIGLILltwqKIAP------- 138
Cdd:TIGR01972 183 GG-GTFDLLELLnlplpfgvqtWLFLAFFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygflrfn 257

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1583103308 139 LSILYQFYQLLNPTITtILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:TIGR01972 258 LPLFPDASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-190 8.81e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.59  E-value: 8.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  14 LMGPVITmssSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF------- 86
Cdd:PRK08375  119 LLGALLT---ADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMadlagal 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  87 -QHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFY----------QLLNPTITT 155
Cdd:PRK08375  196 aENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWLLA 275

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1583103308 156 ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08375  276 VLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-190 4.24e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.03  E-value: 4.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  15 MGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRST---------EAATKYFLTQATASMIILLVIILNYKQSGT-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  84 -----WTFQHQTSNMLLN-------MMLISLAMKLGLAPFHYWLPEVTQGIPMHiglillTWQKIAPLSILYQFYQLLNP 151
Cdd:MTH00198  279 mlgtiLSATLETTNIELRqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTP------TTALIAIIPKFTVYILLTSL 352

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1583103308 152 TITTIL----AISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:MTH00198  353 VITSKLllsvAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
23-190 2.54e-09

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 58.17  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQHQTSN---------- 92
Cdd:PRK06473  126 AQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRshtlplstql 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLNMMLISLAMKLGLAPFHYWLPE--VTQGIPMHIGL--ILLTWQKIAPL----SILYQFYQLLNPTITTILAISsVLI 164
Cdd:PRK06473  206 LLLAPILVGFGIKIPLVPFHTWLPDahVEASTPVSVLLagVLLKLGTYGLLrfgvGLFPEAWVYLAPWLATWAVVS-VLY 284

                         170       180
                  ....*....|....*....|....*.
gi 1583103308 165 GAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK06473  285 GASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-300 6.18e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.98  E-value: 6.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMslLAIIPLLAN---KKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGT 83
Cdd:PRK02504  113 AAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  84 WTFQHQTSNMLLN-----------MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPLSILYQFYQLLNPT 152
Cdd:PRK02504  191 STQLSAIALALITspslglalalvFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 153 IT-------TILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYILLTVPM----FITLMM 221
Cdd:PRK02504  271 FDeqwkllfTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLLAYLFMnlgaFACVIL 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 222 NSATT----INTLSLAWNKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLI 297
Cdd:PRK02504  351 FSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVI 430


                  ...
gi 1583103308 298 YSM 300
Cdd:PRK02504  431 KMM 433
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 13-191 1.82e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 55.59  E-value: 1.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  13 ILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVII----LNYKQSGTWTFQ- 87
Cdd:PRK05846  120 LEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIAd 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  88 -HQTS---NMLLNMML---ISLAMKLGLAPFHYWLPEV-----TQGIPMHIGLILltwqKIAP---LSILYQFY----QL 148
Cdd:PRK05846  200 lLNLPlppGVQYWLFLaffIAFAVKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRFSLPLFpdasHE 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1583103308 149 LNPTITTiLAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:PRK05846  276 FAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 2.30e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 55.32  E-value: 2.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  20 TMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGT----------WT---- 85
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILVYANAATvmgdgemailWTellk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  86 FQHQTSNMLLNM----MLISLAMKLGLAPFHYWLPEVTQGIPMHI-----GLILltwqKIApLSILYQFYQLLNPTITT- 155
Cdd:PRK06458  204 HASLLDPTLMKLafvfLLIGFGTKVGLFPMHAWLPDAHSEAPSPVsallsGVLL----NVA-LYAVLRYYILIDAAIGSd 278

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1583103308 156 -------ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:PRK06458  279 fpgrlllIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
25-190 2.82e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 52.02  E-value: 2.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  25 NLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVII----------LNYKQSGTWTFQHQTSNML 94
Cdd:PRK07363  128 NLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLgivwlsgstsFDYDAISTQNLSLNTQLIL 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  95 LNMMLISLAMKLGLAPFHYWLP----EVTQGIPMHIGLILL---TWQKIA-PLSILYQFYQLLNPTITTILAISsVLIGA 166
Cdd:PRK07363  208 LTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAklgTYGLLRfGLQLFPQTWSLVAPGLAIIGTIS-VIYGA 286

                         170       180
                  ....*....|....*....|....
gi 1583103308 167 WGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK07363  287 LSAIAQKDIKRMVAYSSIGHMGYI 310
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 10-189 1.19e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 50.09  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  10 YFTILM---GPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF 86
Cdd:PRK02546  118 YFLMLAmygGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTF 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  87 QHQT----------SNMLLNMMLISLAMKLGLAPFHYWLP----EVTQGIPMHIGLILLTWQKIAPL----SILYQFYQL 148
Cdd:PRK02546  198 DMTAlaakdfglgfQLLCYAGLLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLrmnaGMLPDAHAQ 277

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1583103308 149 LNPtITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGW 189
Cdd:PRK02546  278 FAP-LLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-190 3.69e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.60  E-value: 3.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  18 VITMS--SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATA------SMIILLVIILNYKQSGT--WT-- 85
Cdd:PRK08676  114 VITFAffSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTlnWTel 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  86 ------FQHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILL-TWQKIAPLSILyQFYQLLNPT------ 152
Cdd:PRK08676  194 aahaslLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGIL-RLSALLRQSgaaeqf 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1583103308 153 --ITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08676  273 snVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 2.58e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLA---IIPLLANKKSPRSteAATKYFLTQATASMIILLVIILNYKQSGTWTF-------QHQTSN 92
Cdd:COG1009   130 SDNLLLLFVFWELVGLCsylLIGFWYEKPSARR--AARKAFLVTRVGDLGLLLGILLLGAIAGTLNFsellaaaPTILSS 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLNMMLISLAM----KLGLAPFHYWLPE-----------------VTQGIPMhiglilltwqkIAPLSILYQFYQLLNP 151
Cdd:COG1009   208 PLLTLILLLLLLgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLT 276

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1583103308 152 TITTILAISSvLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAIL 194
Cdd:COG1009   277 VVAIIGAITA-LFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
24-300 3.20e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  24 SNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQH-----------QTSN 92
Cdd:PRK12663  128 GDLFNLYVWFEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHiamrlndmgdtATLT 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  93 MLLNMMLISLAMKLGLAPFHyWLPEVTQGIPMHIGLI---LLTwqKIAPLSILYQFYQLLNP------TITTILAISSVL 163
Cdd:PRK12663  208 TIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALfaaLLT--KVGIYALIRVFTLLFPQerellhPLLATMAAITMV 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 164 IGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNpNLTFLNLTIYILLTVPMFITLM---------MNSATTINTLSLAW 234
Cdd:PRK12663  285 IGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVKTALfliagslvrLTGYRSLQYLGGLY 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583103308 235 NKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSM 300
Cdd:PRK12663  364 RKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 23-188 3.21e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 3.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQHQTSNM--------- 93
Cdd:PRK12561  106 AQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAksyplalel 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  94 -LLNMMLISLAMKLGLAPFHYWLP----EVTQGIPMHIGLILLTWQKIA----PLSILYQFYQLLNPtITTILAISSVLI 164
Cdd:PRK12561  186 lLYAGFLIAFGVKLPIFPLHTWLPdahgEASAPVSMILAGVLLKMGGYAlirfNVQMLPDAHVYFAP-ALAILGVVNIIY 264

                         170       180
                  ....*....|....*....|....
gi 1583103308 165 GAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK12561  265 GALNAFAQDNVKRRLAYSSVSHMG 288
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 8-188 4.79e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 45.14  E-value: 4.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   8 IIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQ 87
Cdd:PRK08377  112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  88 H--QTSNML--------LNMMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLILLTWQKIAPL----SILYQFYQLLNPT- 152
Cdd:PRK08377  192 HiaQLAGTIdptvaqvgLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLyamaRILYLMQNANGWSs 271

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1583103308 153 ---ITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK08377  272 vlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVG 310
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 54-211 7.64e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.53  E-value: 7.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  54 EAATKYFLTQATASMIILLVIILNYKQSGTWTF----------QHQTSNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIP 123
Cdd:MTH00226  182 QAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYltlascshvvSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAP 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 124 MH--------------IGLILLTWqKIAPLSIlyqfyQLLNPTITTiLAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGw 189
Cdd:MTH00226  262 VAgsvllagillklggYGLVRLSW-PILPLGA-----QNLAPAVIA-MGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG- 333

                         170       180
                  ....*....|....*....|..
gi 1583103308 190 MTAILPYNPNLTFLNLTIYILL 211
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIML 355
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-323 1.07e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.55  E-value: 1.07e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1583103308 291 FFYTRLIYSMSLTMFPTNNNSKMISHHQNPKHN 323
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNT 33
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-188 2.71e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.50  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   2 NPITLIIIYFTILMGPVITMSSsNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYF-LTQATASMIILLVIILNYKQ 80
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLkILMISALLLFLPAVILIYTK 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  81 SGTWTFQHQT-----SNMLLNMMLISLAMKLGLAPFHYWLPE-----------------VTQGIPMHIGLILLTWQkiap 138
Cdd:PRK06589  194 TGNLDFVSGGlfsknQSIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIFG---- 269

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1583103308 139 LSILYQFYQLLNPTIttILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK06589  270 LSYLQRIFAEFNWLI--FIPIVSIFYSSLKALKTDNIKKILAYSTISQLS 317
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 54-191 3.89e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 41.96  E-value: 3.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  54 EAATKYFLTQATASMIILLVIILNYKQSGTWTFQ--------HQTSNMLLNMMLISLAMKLGLAPFHYWLPE-------- 117
Cdd:MTH00217  160 QASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQalcclkieKELQYFIFLGFFLSLAIKIPKIPFHIWLPQahveapva 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 118 ---VTQGIPMHIG---LILLTWqkiaplSILYQFYQLLNPTITTiLAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:MTH00217  240 gsvILAGVLLKLGgygFIRFSW------PLLPEASEYFSPLIQT-LSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVT 312
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 55-191 4.62e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 41.97  E-value: 4.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  55 AATKYFLTQATASMIILLVIILNYKQSGTWTFQhqtsnMLLNMML-------------ISLAMKLGLAPFHYWLPE---- 117
Cdd:MTH00204  164 ASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQ-----ILLNIKLplsiqkwllvgffLSLAVKIPQIPFHIWLPQahve 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 118 -------VTQGIPMHIG---LILLTWqKIAPLSILYqfyqlLNPTITtILAISSVLIGAWGGLNQTQTRKIMAYSSIAHM 187
Cdd:MTH00204  239 apvagsvILAGILLKLGgygFLRFSW-PLFPAASEY-----FAPLIV-MLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHM 311


                  ....
gi 1583103308 188 GWMT 191
Cdd:MTH00204  312 GLVP 315
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 9-194 1.18e-03

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 40.60  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308   9 IYFTILMGPVI-TMSSSNLLLMWVGLEMSLLAIIPLLAN-KKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTF 86
Cdd:TIGR00940 110 AYLLAFMGAMLgVVLSDNLILLYVFWELTSIVSFLLISYwHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSI 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  87 QH--QTSNMLLNMMLISLAMKLGLA---------PFHYWLPEVTQG-IPMHIGLILLTWQKiAPLSILYQFYQLLNPT-- 152
Cdd:TIGR00940 190 DAviASADAIRNSPLFGTAMVLVLLgaftksaqfPFHIWLPDAMEApTPVSAYLHSATMVK-AGLYLLARFTPVFAGTea 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1583103308 153 ---ITTILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAIL 194
Cdd:TIGR00940 269 wfwIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLL 313
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 35-188 1.91e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  35 MSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGTWTFQ-HQTSNMLLNMMLISL----AMKLGLA 109
Cdd:PRK08667  143 MALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSpLGASAGILSLVFLLLflgfGIKAGII 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 110 PFHYWLPEVTQGIPMHI-GLILLTWQKIAPLSILYQFYQLLNPTI-----TTILAISSVLIGAWGGLNQTQTRKIMAYSS 183
Cdd:PRK08667  223 PFHKWLPYAHPASPSNVsALMSGVMLKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSS 302


                  ....*
gi 1583103308 184 IAHMG 188
Cdd:PRK08667  303 IENIG 307
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-300 5.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 38.41  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  29 MWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGT-----------WTFQHQTSNMLLN 96
Cdd:PRK12667  138 LFVMLEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTlnmadlsakirGLSFPLTGGLAGN 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308  97 ----------MMLISLAMKLGLAPFHYWLPEVTQGIPMHIGLIL----LTWQKIAPLSILYQFY---QLLNPTITT---- 155
Cdd:PRK12667  218 pplalgvalaLALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLsglvVNVGAYAIIRFLYTIFgisPSLIDFRAAlspi 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583103308 156 --ILAISSVLIGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTFLNLTIYIL----------LTVPMFItlmmNS 223
Cdd:PRK12667  298 liILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI----HA 373

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1583103308 224 ATT--INTLSLAWNKTPMILAMASTILLSLGGLPPLTGFLPKWVIISELLKNNCSTLSTLMAIMALLNLFFYTRLIYSM 300
Cdd:PRK12667  374 AGTrdIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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