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Conserved domains on  [gi|157887593|emb|CAL80949|]
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ribosomal protein L22, partial (chloroplast) [Coffea congensis]

Protein Classification

50S ribosomal protein L22( domain architecture ID 10784664)

50S ribosomal protein L22 binds specifically to 23S rRNA and is important during the early stages of 50S assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl22 CHL00034
ribosomal protein L22
 1-65 2.19e-41

ribosomal protein L22


:

Pssm-ID: 214342  Cd Length: 117  Bit Score: 130.44  E-value: 2.19e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157887593   1 MLKKKKTEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANAS 65
Cdd:CHL00034   2 MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANAS 66
 
Name Accession Description Interval E-value
rpl22 CHL00034
ribosomal protein L22
 1-65 2.19e-41

ribosomal protein L22


Pssm-ID: 214342  Cd Length: 117  Bit Score: 130.44  E-value: 2.19e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157887593   1 MLKKKKTEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANAS 65
Cdd:CHL00034   2 MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANAS 66
Ribosomal_L22 cd00336
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal ...
 9-64 9.83e-17

Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.


Pssm-ID: 238205  Cd Length: 105  Bit Score: 67.52  E-value: 9.83e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 157887593   9 VYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:cd00336    1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANA 56
RplV COG0091
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 ...
 7-64 8.33e-16

Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439861  Cd Length: 110  Bit Score: 65.07  E-value: 8.33e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157887593   7 TEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:COG0091    1 MEAKAKLRYVRISPRKARLVADLIRGKKVEEALAILEFSPKKAARIVLKVLKSAIANA 58
Ribosomal_L22 pfam00237
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and ...
 11-64 2.85e-15

Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.


Pssm-ID: 459725  Cd Length: 104  Bit Score: 63.57  E-value: 2.85e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157887593   11 ALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:pfam00237   1 AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKKAAKIVLKLLKSAIANA 54
rplV_bact TIGR01044
ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal ...
 11-64 4.60e-12

ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal protein L22. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130116  Cd Length: 103  Bit Score: 55.60  E-value: 4.60e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157887593   11 ALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:TIGR01044   1 AKARFVRISPRKARLVADLIRGKQVGEALDILRFTPKKASPIIEKVLASAIANA 54
 
Name Accession Description Interval E-value
rpl22 CHL00034
ribosomal protein L22
 1-65 2.19e-41

ribosomal protein L22


Pssm-ID: 214342  Cd Length: 117  Bit Score: 130.44  E-value: 2.19e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157887593   1 MLKKKKTEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANAS 65
Cdd:CHL00034   2 MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANAS 66
Ribosomal_L22 cd00336
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal ...
 9-64 9.83e-17

Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.


Pssm-ID: 238205  Cd Length: 105  Bit Score: 67.52  E-value: 9.83e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 157887593   9 VYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:cd00336    1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANA 56
RplV COG0091
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 ...
 7-64 8.33e-16

Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439861  Cd Length: 110  Bit Score: 65.07  E-value: 8.33e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157887593   7 TEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:COG0091    1 MEAKAKLRYVRISPRKARLVADLIRGKKVEEALAILEFSPKKAARIVLKVLKSAIANA 58
Ribosomal_L22 pfam00237
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and ...
 11-64 2.85e-15

Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.


Pssm-ID: 459725  Cd Length: 104  Bit Score: 63.57  E-value: 2.85e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157887593   11 ALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:pfam00237   1 AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKKAAKIVLKLLKSAIANA 54
rplV_bact TIGR01044
ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal ...
 11-64 4.60e-12

ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal protein L22. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130116  Cd Length: 103  Bit Score: 55.60  E-value: 4.60e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157887593   11 ALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64
Cdd:TIGR01044   1 AKARFVRISPRKARLVADLIRGKQVGEALDILRFTPKKASPIIEKVLASAIANA 54
PRK12279 PRK12279
50S ribosomal protein L22/unknown domain fusion protein; Provisional
 11-65 4.67e-04

50S ribosomal protein L22/unknown domain fusion protein; Provisional


Pssm-ID: 138835 [Multi-domain]  Cd Length: 311  Bit Score: 36.21  E-value: 4.67e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 157887593  11 ALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANAS 65
Cdd:PRK12279   5 VIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQ 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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