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Conserved domains on  [gi|157821377|ref|NP_001100672|]
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hematopoietic progenitor cell antigen CD34 isoform 1 [Rattus norvegicus]

Protein Classification

Herpes_BLLF1 and CD34_antigen domain-containing protein( domain architecture ID 10533843)

Herpes_BLLF1 and CD34_antigen domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
 191-386 1.79e-87

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


:

Pssm-ID: 461884  Cd Length: 211  Bit Score: 263.53  E-value: 1.79e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  191 CLELSEASSCEEFKKERGEELMQILCKKEETEADAGTSVCSLNLAQSEVRPECLLMVLANSTELS--SKLQLMEKHQSDL 268
Cdd:pfam06365   1 ILNLNETSDCEDFKKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPpkAVLELLKDKRRDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  269 RKLGIQSF------NKQDLGSHQSYSRKTLIALVTSGVLLAILGTTGYF--LMNRRSWSPTGERLGEDPYYTENGG-GQG 339
Cdd:pfam06365  81 EELGIQNFtygtecQEEDVQSHQDYSKLTLIALVTSGILLAILLVAGYYgcLHRRRSKSKAGERLGEELQTVENGYhDNP 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 157821377  340 -YSSGPGTSPETQGKANVTRGAQENGTGQAT---SRNGHSARQHVVADTEL 386
Cdd:pfam06365 161 tLSVAPDTQSEMQEKPSVNGGAQENGTGSWIvplSRNGHSDRQHVEEDTHL 211
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 40-166 1.68e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.75  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377   40 TQGVFPPVPTNESTEESITSSIPGSTShyyligQDSNKTTPAISETTVNFTATPGTPS-GSGTPHTfsqpqTYPTV--TL 116
Cdd:pfam05109 510 TSAVTTPTPNATSPTPAVTTPTPNATS------PTLGKTSPTSAVTTPTPNATSPTPAvTTPTPNA-----TIPTLgkTS 578

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 157821377  117 PTTSDSTSTPEVEHSTWNTSLPSVNVSDYSPNNVSSEMISTTEPCAHTSS 166
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSA 628
 
Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
 191-386 1.79e-87

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


Pssm-ID: 461884  Cd Length: 211  Bit Score: 263.53  E-value: 1.79e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  191 CLELSEASSCEEFKKERGEELMQILCKKEETEADAGTSVCSLNLAQSEVRPECLLMVLANSTELS--SKLQLMEKHQSDL 268
Cdd:pfam06365   1 ILNLNETSDCEDFKKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPpkAVLELLKDKRRDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  269 RKLGIQSF------NKQDLGSHQSYSRKTLIALVTSGVLLAILGTTGYF--LMNRRSWSPTGERLGEDPYYTENGG-GQG 339
Cdd:pfam06365  81 EELGIQNFtygtecQEEDVQSHQDYSKLTLIALVTSGILLAILLVAGYYgcLHRRRSKSKAGERLGEELQTVENGYhDNP 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 157821377  340 -YSSGPGTSPETQGKANVTRGAQENGTGQAT---SRNGHSARQHVVADTEL 386
Cdd:pfam06365 161 tLSVAPDTQSEMQEKPSVNGGAQENGTGSWIvplSRNGHSDRQHVEEDTHL 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 40-166 1.68e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.75  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377   40 TQGVFPPVPTNESTEESITSSIPGSTShyyligQDSNKTTPAISETTVNFTATPGTPS-GSGTPHTfsqpqTYPTV--TL 116
Cdd:pfam05109 510 TSAVTTPTPNATSPTPAVTTPTPNATS------PTLGKTSPTSAVTTPTPNATSPTPAvTTPTPNA-----TIPTLgkTS 578

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 157821377  117 PTTSDSTSTPEVEHSTWNTSLPSVNVSDYSPNNVSSEMISTTEPCAHTSS 166
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSA 628
 
Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
 191-386 1.79e-87

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


Pssm-ID: 461884  Cd Length: 211  Bit Score: 263.53  E-value: 1.79e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  191 CLELSEASSCEEFKKERGEELMQILCKKEETEADAGTSVCSLNLAQSEVRPECLLMVLANSTELS--SKLQLMEKHQSDL 268
Cdd:pfam06365   1 ILNLNETSDCEDFKKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPpkAVLELLKDKRRDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377  269 RKLGIQSF------NKQDLGSHQSYSRKTLIALVTSGVLLAILGTTGYF--LMNRRSWSPTGERLGEDPYYTENGG-GQG 339
Cdd:pfam06365  81 EELGIQNFtygtecQEEDVQSHQDYSKLTLIALVTSGILLAILLVAGYYgcLHRRRSKSKAGERLGEELQTVENGYhDNP 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 157821377  340 -YSSGPGTSPETQGKANVTRGAQENGTGQAT---SRNGHSARQHVVADTEL 386
Cdd:pfam06365 161 tLSVAPDTQSEMQEKPSVNGGAQENGTGSWIvplSRNGHSDRQHVEEDTHL 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 40-166 1.68e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.75  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377   40 TQGVFPPVPTNESTEESITSSIPGSTShyyligQDSNKTTPAISETTVNFTATPGTPS-GSGTPHTfsqpqTYPTV--TL 116
Cdd:pfam05109 510 TSAVTTPTPNATSPTPAVTTPTPNATS------PTLGKTSPTSAVTTPTPNATSPTPAvTTPTPNA-----TIPTLgkTS 578

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 157821377  117 PTTSDSTSTPEVEHSTWNTSLPSVNVSDYSPNNVSSEMISTTEPCAHTSS 166
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSA 628
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 30-166 3.91e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.60  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821377   30 NLTSVASENSTQGVFPPVPTNESTEESITSSIPGSTSHYYLIGQDS-NKTTPAISETTVNFTATpgTPSGSGTPHTFSQP 108
Cdd:pfam05109 472 DVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTpNATSPTPAVTTPTPNAT--SPTLGKTSPTSAVT 549

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 157821377  109 QTYPTVTLPTTSDSTSTPEVEHSTWNTSLPSVNVSDYSPnNVSSEMISTTEPCAHTSS 166
Cdd:pfam05109 550 TPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP-NATSPTVGETSPQANTTN 606
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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