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Conserved domains on  [gi|157819061|ref|NP_001099681|]
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acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase [Rattus norvegicus]

Protein Classification

glycosyltransferase family protein( domain architecture ID 229488)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Galactosyl_T super family cl21608
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 126-320 1.32e-52

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


The actual alignment was detected with superfamily member pfam01762:

Pssm-ID: 473923 [Multi-domain]  Cd Length: 195  Bit Score: 173.66  E-value: 1.32e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  126 ERRELIRRTWGQERSYSGQQVRRLFLVGTSspeeAAREPQLADLLSLEAREHGDVLQWDFKDTFLNLTLKHLHLLDWTEE 205
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLS----ADTDGKVADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  206 HCPGMSFLLSCDDDVFVHTANVLRFL--EVQSPERHLFTGQLMAGSVPIRESWSKYFVPRQLFPGTAYPVYCSGGGFLMS 283
Cdd:pfam01762  77 KCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLS 156

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 157819061  284 RRTAQDLRRASHHVPLFPIDDAYMGMCLQQAGLAPSN 320
Cdd:pfam01762 157 RDAAEKLLKASKHRRFLQIEDVYVGILANDLGISRVN 193
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 126-320 1.32e-52

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 173.66  E-value: 1.32e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  126 ERRELIRRTWGQERSYSGQQVRRLFLVGTSspeeAAREPQLADLLSLEAREHGDVLQWDFKDTFLNLTLKHLHLLDWTEE 205
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLS----ADTDGKVADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  206 HCPGMSFLLSCDDDVFVHTANVLRFL--EVQSPERHLFTGQLMAGSVPIRESWSKYFVPRQLFPGTAYPVYCSGGGFLMS 283
Cdd:pfam01762  77 KCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLS 156

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 157819061  284 RRTAQDLRRASHHVPLFPIDDAYMGMCLQQAGLAPSN 320
Cdd:pfam01762 157 RDAAEKLLKASKHRRFLQIEDVYVGILANDLGISRVN 193
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 110-367 3.11e-14

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 74.07  E-value: 3.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 110 RGVFLLLAVKSSPAHYERRELIRRTWGQERSYSGQQVRRLFLVGTSSPEEAAREpqladlLSLEAREHGDVLQWDFKDTF 189
Cdd:PLN03133 383 KPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEE------LWNEARTYGDIQLMPFVDYY 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 190 LNLTLKHLHLLDWTEEhCPGMSFLLSCDDDVFVHTANVLRFLEVQSPERHLFTGQLMAGSVPIRESWSKYFVPRQLFPGT 269
Cdd:PLN03133 457 SLITWKTLAICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEE 535

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 270 AYPVYCSGGGFLMSRRTAQDL--RRASHHVPLFPIDDAYMGMC---LQQAGLAPS--NHEGIRPFGVQlpgtkrssfdpc 342
Cdd:PLN03133 536 TYPPWAHGPGYVVSRDIAKEVykRHKEGRLKMFKLEDVAMGIWiaeMKKEGLEVKyeNDGRIYNEGCK------------ 603

                        250       260
                 ....*....|....*....|....*
gi 157819061 343 myRELLLVHRFAPYEMLLMWKALHD 367
Cdd:PLN03133 604 --DGYVVAHYQSPREMLCLWQKLQE 626
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 126-320 1.32e-52

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 173.66  E-value: 1.32e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  126 ERRELIRRTWGQERSYSGQQVRRLFLVGTSspeeAAREPQLADLLSLEAREHGDVLQWDFKDTFLNLTLKHLHLLDWTEE 205
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLS----ADTDGKVADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061  206 HCPGMSFLLSCDDDVFVHTANVLRFL--EVQSPERHLFTGQLMAGSVPIRESWSKYFVPRQLFPGTAYPVYCSGGGFLMS 283
Cdd:pfam01762  77 KCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLS 156

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 157819061  284 RRTAQDLRRASHHVPLFPIDDAYMGMCLQQAGLAPSN 320
Cdd:pfam01762 157 RDAAEKLLKASKHRRFLQIEDVYVGILANDLGISRVN 193
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 110-367 3.11e-14

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 74.07  E-value: 3.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 110 RGVFLLLAVKSSPAHYERRELIRRTWGQERSYSGQQVRRLFLVGTSSPEEAAREpqladlLSLEAREHGDVLQWDFKDTF 189
Cdd:PLN03133 383 KPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEE------LWNEARTYGDIQLMPFVDYY 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 190 LNLTLKHLHLLDWTEEhCPGMSFLLSCDDDVFVHTANVLRFLEVQSPERHLFTGQLMAGSVPIRESWSKYFVPRQLFPGT 269
Cdd:PLN03133 457 SLITWKTLAICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEE 535

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819061 270 AYPVYCSGGGFLMSRRTAQDL--RRASHHVPLFPIDDAYMGMC---LQQAGLAPS--NHEGIRPFGVQlpgtkrssfdpc 342
Cdd:PLN03133 536 TYPPWAHGPGYVVSRDIAKEVykRHKEGRLKMFKLEDVAMGIWiaeMKKEGLEVKyeNDGRIYNEGCK------------ 603

                        250       260
                 ....*....|....*....|....*
gi 157819061 343 myRELLLVHRFAPYEMLLMWKALHD 367
Cdd:PLN03133 604 --DGYVVAHYQSPREMLCLWQKLQE 626
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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