|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
1-699 |
0e+00 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 926.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 1 MTAEMTNKNSSQE-ADEMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKQGNAILSSLSQML 79
Cdd:PRK11519 1 MTEKVKQHAAPVTgSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 80 PDSQPQSAPEIALLQSRMILGKTVDDLNLQTKIEQDYFPLLGKGFSRILGHKEGKVSIGNISLPESNEEITeLELTVVND 159
Cdd:PRK11519 81 ANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQV-FTLNVLDD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 160 KTYEI-SGNDFSAIGKVGETLQKQGYEILINEINAEPGTRFSISYLSRLKAINNLQEAFNVADQGKDTGVLNLTLTGENP 238
Cdd:PRK11519 160 KNYQLsSDGGFSARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 239 ILVAKILDSISQNYLAQNVARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLNAYRKQKDSVDLTMEAKTVLDQIVNVDNQ 318
Cdd:PRK11519 240 EQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 319 LNELTFKEAEISQLYTQEHPTYKALMEKRKTLQQEKSKLNKRVSSMPSTQQEVLRLSRDVESGRAVYLQLLNRQQELNIA 398
Cdd:PRK11519 320 LNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 399 KSSAIGNVRIIDDAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLRVFLRRGIESPEQLEDIGISVYAGIPVSE-SLSK 477
Cdd:PRK11519 400 EASTVGDVRIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEwQKAR 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 478 DN-KRSGSKRKQESSVLLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVL 556
Cdd:PRK11519 480 DSvKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVL 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 557 YIDADMRKGYAHKLFGSEKNKGLSDILSGKSSVKDAITNLPNAGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLI 636
Cdd:PRK11519 560 LIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLV 639
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1575750972 637 IVDTPPILAVTDAAVIGRYAGTTLIVARFEKDTVKEISVSMKRFQQSGTIVKGCILNGIVKKA 699
Cdd:PRK11519 640 LIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 702
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
1-699 |
0e+00 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 905.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 1 MTAEMTNK-NSSQEADEMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKQGNAILSSLSQML 79
Cdd:PRK09841 1 MTTKNMNTpPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 80 PDSQPQSAPEIALLQSRMILGKTVDDLNLQTKIEQDYFPLLGKGFSRILGHKEGKVSIGNISLPESNEEITELELTVVND 159
Cdd:PRK09841 81 PNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 160 KTYEISGNDFSAIGKVGETLQKQGYEILINEINAEPGTRFSISYLSRLKAINNLQEAFNVADQGKDTGVLNLTLTGENPI 239
Cdd:PRK09841 161 GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 240 LVAKILDSISQNYLAQNVARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLNAYRKQKDSVDLTMEAKTVLDQIVNVDNQL 319
Cdd:PRK09841 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 320 NELTFKEAEISQLYTQEHPTYKALMEKRKTLQQEKSKLNKRVSSMPSTQQEVLRLSRDVESGRAVYLQLLNRQQELNIAK 399
Cdd:PRK09841 321 NELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 400 SSAIGNVRIIDDAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLRVFLRRGIESPEQLEDIGISVYAGIPVSESLSKD- 478
Cdd:PRK09841 401 SSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRt 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 479 ---NKRSGSKRKQESSV---LLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAG 552
Cdd:PRK09841 481 rlrKKNLFSNQQRHRTKnipFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 553 SKVLYIDADMRKGYAHKLFGSEKNKGLSDILSGKSSVKDAITNLPNAGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKN 632
Cdd:PRK09841 561 QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDH 640
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1575750972 633 YDLIIVDTPPILAVTDAAVIGRYAGTTLIVARFEKDTVKEISVSMKRFQQSGTIVKGCILNGIVKKA 699
Cdd:PRK09841 641 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 707
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
16-693 |
1.33e-108 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 347.09 E-value: 1.33e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 16 EMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKqgnaiLSSLSQMLPDS------QPQSAPE 89
Cdd:TIGR01005 3 EIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPsnlfdlDTDAAAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 90 IALLQSRMILGKTVDDLNL---QTKIEQDYFP--LLGKGFSRILGH--------------KEGKVSIGNISLPESnEEIT 150
Cdd:TIGR01005 78 IEILKSGELAGKAVDKLHLsenAKILNPPRFPvdLIGAWIKSAAGLfsepggfdlgeeaaGNERIDKAAADIPEA-LAGE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 151 ELELTVVNDKTYEISGNDFSA-----IGKVGETLQKQG-YEILINEINAEPGTRFSISYLSRLKAINNLQEAFNVADQGK 224
Cdd:TIGR01005 157 PFKLISLGAGAFRLEDKLLAApiaggVAEALEADQLIAnFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 225 DTGVLNL-TLTGENPILVAKILDSISQNYLAQNVARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLNAYRKQKDSVDLTM 303
Cdd:TIGR01005 237 QGEIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 304 EAKTVLDQIVNVDNQLNELTFKEAEISQLYTQEHPTYKALMEKR-KTLQQEKSKLNKRVSSMPSTQQEVLRLSRDVESGR 382
Cdd:TIGR01005 317 EFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIeESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADK 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 383 AVYLQLLNRQQELNIAKSSAIGNVRIIDDAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLRVFLRRGIESPEQLEDI- 461
Cdd:TIGR01005 397 ELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEHl 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 462 GISVYAGIPVSESLSKDN------KRSGSKRKQESSV------LLA---LENPADLAIEAIRSLRTSLHFAMMEAKNNVL 526
Cdd:TIGR01005 477 GHRSLATVPLLDTQMDKKaqlthaHFGSVKRHDEAVDdtmpfqLLArivPDAPRSTFAEAFRNAKLACDFALADAENNLI 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 527 MISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILSGKSSVKDAITNLPNAGFDYIPR 606
Cdd:TIGR01005 557 AIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIAA 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 607 GQV---PPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAAVIGRYAGTTLIVARFEKDTVKEISVSMKRFQQS 683
Cdd:TIGR01005 637 GGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHA 716
|
730
....*....|
gi 1575750972 684 GTIVKGCILN 693
Cdd:TIGR01005 717 NSDVLGVIFN 726
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
4-699 |
1.03e-81 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 273.82 E-value: 1.03e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 4 EMTNKNSSQEADEMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKQGNAILSSLSQMlPDSQ 83
Cdd:COG3206 2 NESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL-SASD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 84 PQSAPEIALLQSRMILGKTVDDLNLQTKIEQdyfpllgkgfsrilghkegkvsignislpesneeiteleltvvndktye 163
Cdd:COG3206 81 SPLETQIEILKSRPVLERVVDKLNLDEDPLG------------------------------------------------- 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 164 isgndfsaigkvgetlqkqgyeilineinaepgtrfsiSYLSRLKAINNLQEAFNVADQgKDTGVLNLTLTGENPILVAK 243
Cdd:COG3206 112 --------------------------------------EEASREAAIERLRKNLTVEPV-KGSNVIEISYTSPDPELAAA 152
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 244 ILDSISQNYLAQNVARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLNAYRKQKDSVDLTMEAKTVLDQIVNVDNQLN--- 320
Cdd:COG3206 153 VANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAear 232
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 321 -----------------------------------------ELTFKEAEISQLYTQEHPTYKALMEKR------------ 347
Cdd:COG3206 233 aelaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqeaq 312
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 348 -----------------KTLQQEKSKLNKRVSSMPSTQQEVLRLSRDVESGRAVYLQLLNRQQELNIAKSSAIGNVRIID 410
Cdd:COG3206 313 rilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVID 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 411 DAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLRVFLRRGIESPEQLEDIGisvyaGIPVSESLSKDNKRSGSKRKQES 490
Cdd:COG3206 393 PAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLL-----GLPLLGPLPPLKSKRERRRARLA 467
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 491 SVLLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKL 570
Cdd:COG3206 468 LLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLLLLLLL 547
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 571 FGSEKNKGLSDILSGKSSVKDAITNLPNAGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAA 650
Cdd:COG3206 548 LLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAALLAAA 627
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1575750972 651 VIGRYAGTTLIVARFEKDTVKEISVSMKRFQQSGTIVKGCILNGIVKKA 699
Cdd:COG3206 628 VLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGY 676
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
505-694 |
2.08e-72 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 233.23 E-value: 2.08e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 505 EAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILS 584
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 585 GKSSVKDAITNLPNAGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAAVIGRYAGTTLIVAR 664
Cdd:cd05387 81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160
|
170 180 190
....*....|....*....|....*....|
gi 1575750972 665 FEKDTVKEISVSMKRFQQSGTIVKGCILNG 694
Cdd:cd05387 161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
492-695 |
2.29e-57 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 196.56 E-value: 2.29e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 492 VLLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLF 571
Cdd:COG0489 61 LLLLLLLGLLLLLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRML 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 572 GSEKNKGLSDILSGKSSVKDAITNLPNAGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAAV 651
Cdd:COG0489 141 GLENRPGLSDVLAGEASLEDVIQPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATL 220
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1575750972 652 IGRYAGTTLIVARFEKDTVKEISVSMKRFQQSGTIVKGCILNGI 695
Cdd:COG0489 221 LASLVDGVLLVVRPGKTALDDVRKALEMLEKAGVPVLGVVLNMV 264
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
505-695 |
1.63e-44 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 158.37 E-value: 1.63e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 505 EAIRSLRTSLHFAMMEAKnnVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGS-EKNKGLSDIL 583
Cdd:TIGR01007 1 EYYNAIRTNIQFSGAEIK--VLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSqNKITGLTNFL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 584 SGKSSVKDAI--TNLPNagFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAAVIGRYAGTTLI 661
Cdd:TIGR01007 79 SGTTDLSDAIcdTNIEN--LDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASIL 156
|
170 180 190
....*....|....*....|....*....|....
gi 1575750972 662 VARFEKDTVKEISVSMKRFQQSGTIVKGCILNGI 695
Cdd:TIGR01007 157 VTDAGKIKKREVKKAKEQLEQAGSNFLGVVLNKV 190
|
|
| EpsG |
TIGR03029 |
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ... |
490-693 |
1.09e-36 |
|
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Pssm-ID: 132074 [Multi-domain] Cd Length: 274 Bit Score: 138.84 E-value: 1.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 490 SSVLLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHK 569
Cdd:TIGR03029 70 SPDLIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHR 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 570 LFGSEKNKGLSDILSGKSSVKdAITNLPN-AGFDYIPRGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTD 648
Cdd:TIGR03029 150 NFKLSEQRGLSDILAGRSDLE-VITHIPAlENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSD 228
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1575750972 649 AAVIGRYAGTTLIVARFEKDTVKEISVSMKRFQQSGTIVKGCILN 693
Cdd:TIGR03029 229 AQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
|
|
| Wzz |
pfam02706 |
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ... |
15-105 |
4.79e-25 |
|
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Pssm-ID: 460658 [Multi-domain] Cd Length: 90 Bit Score: 99.28 E-value: 4.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 15 DEMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKQGNAILSSLSQMLPDSQPQSApEIALLQ 94
Cdd:pfam02706 1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKKGEAGSLLGSDLQAGLQLAST-EIEILK 79
|
90
....*....|.
gi 1575750972 95 SRMILGKTVDD 105
Cdd:pfam02706 80 SRDVLEKVIDE 90
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
366-447 |
4.06e-23 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 93.43 E-value: 4.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 366 STQQEVLRLSRDVESGRAVYLQLLNRQQELNIAKSSAIGNVRIIDDAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLR 445
Cdd:pfam13807 1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80
|
..
gi 1575750972 446 VF 447
Cdd:pfam13807 81 RA 82
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
539-670 |
4.34e-16 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 78.01 E-value: 4.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 539 FVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILSGKSSVKDAITNLPNaGFDYIPRGQVPPNPAELLM 618
Cdd:COG0455 1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGPG-GLDVLPGGSGPAELAELDP 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1575750972 619 HPRFEALLGEVSKNYDLIIVDTPP-ILAVTDAAVigRYAGTTLIVARFEKDTV 670
Cdd:COG0455 80 EERLIRVLEELERFYDVVLVDTGAgISDSVLLFL--AAADEVVVVTTPEPTSI 130
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
536-642 |
5.11e-13 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 69.14 E-value: 5.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 536 GKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILSGKSSVKDAITNLPnAGFDYIPRGQVPPNPAE 615
Cdd:cd02038 13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEGP-EGLDIIPGGSGMEELAN 91
|
90 100
....*....|....*....|....*....
gi 1575750972 616 L--LMHPRFEALLGEVSKNYDLIIVDTPP 642
Cdd:cd02038 92 LdpEQKAKLIEELSSLESNYDYLLIDTGA 120
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
442-663 |
1.85e-12 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 69.37 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 442 VLLRVFLRRGIESPEQLEDIGISVYAGIPVSESLSKDNKRSGSKRKQESSVLLALENPADLaIEAIRSLRTSLHfammEA 521
Cdd:COG4963 26 IEAAAEDRRLALAAVAVASGGAAAAAAAYLSAPTPNLILLEALSESAALLADVLPLSPDEL-RAALARLLDPGA----AR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 522 KNNVLMISGASPNAGKTFVSSNLAVIMAH-AGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILSGKSS-----VKDAITN 595
Cdd:COG4963 101 RGRVIAVVGAKGGVGATTLAVNLAWALAReSGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDRldetlLDRALTR 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1575750972 596 LPNaGFDYIPrGQVPPNPAELLMHPRFEALLGEVSKNYDLIIVDTPPILAVTDAAVIGRyAGTTLIVA 663
Cdd:COG4963 181 HSS-GLSVLA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGLNPWTLAALEA-ADEVVLVT 245
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
536-652 |
9.26e-12 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 65.65 E-value: 9.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 536 GKTFVSSNLAVIMAHAGSKVLYIDADMRkGYAHKLFG---SEKNKGLSDILSGKSSVKDAITNLPNAGFDYIprgqvPPN 612
Cdd:COG1192 14 GKTTTAVNLAAALARRGKRVLLIDLDPQ-GNLTSGLGldpDDLDPTLYDLLLDDAPLEDAIVPTEIPGLDLI-----PAN 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1575750972 613 P------AELLMHP----RFEALLGEVSKNYDLIIVDTPPILAV-TDAAVI 652
Cdd:COG1192 88 IdlagaeIELVSRPgrelRLKRALAPLADDYDYILIDCPPSLGLlTLNALA 138
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
536-644 |
6.20e-11 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 61.83 E-value: 6.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 536 GKTFVSSNLAVIMAHAGSKVLYIDADMrKGYAHKLFGSEKNKG---LSDILSGKSSVKDAITNLPNAGFDYIPrGQVPPN 612
Cdd:pfam13614 14 GKTTTSVNLAAALAKKGKKVLLIDLDP-QGNATSGLGIDKNNVektIYELLIGECNIEEAIIKTVIENLDLIP-SNIDLA 91
|
90 100 110
....*....|....*....|....*....|....*...
gi 1575750972 613 PAELLM------HPRFEALLGEVSKNYDLIIVDTPPIL 644
Cdd:pfam13614 92 GAEIELigienrENILKEALEPVKDNYDYIIIDCPPSL 129
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
526-647 |
1.37e-09 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 58.90 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 526 LMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDAD-MRKGYAHKLFGSEKNKG---LSDILSGKSSVKDAI--TNLPNA 599
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpQSNNSSVEGLEGDIAPAlqaLAEGLKGRVNLDPILlkEKSDEG 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1575750972 600 GFDYIPRGQVPPNPAELLMHPRFEALLGE----VSKNYDLIIVDTPPILAVT 647
Cdd:pfam01656 81 GLDLIPGNIDLEKFEKELLGPRKEERLREaleaLKEDYDYVIIDGAPGLGEL 132
|
|
| minD_arch |
TIGR01969 |
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD ... |
536-693 |
1.57e-09 |
|
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Pssm-ID: 131024 [Multi-domain] Cd Length: 251 Bit Score: 58.97 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 536 GKTFVSSNLAVIMAHAGSKVLYIDADMRKGYAHKLFGSEKNK-GLSDILSGKSSVKDAITNLPNaGFDYIPRGQvppnPA 614
Cdd:TIGR01969 13 GKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPvTLHDVLAGEADIKDAIYEGPF-GVKVIPAGV----SL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 615 ELLMHP---RFEALLGEVSKNYDLIIVDTPPILAVTdaAVIGRYAGTTLIVARFEK-----DTVKEISVSMKrfqqSGTI 686
Cdd:TIGR01969 88 EGLRKAdpdKLEDVLKEIIDDTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEissitDALKTKIVAEK----LGTA 161
|
....*..
gi 1575750972 687 VKGCILN 693
Cdd:TIGR01969 162 ILGVVLN 168
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
16-114 |
1.78e-09 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 59.70 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 16 EMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALIQVEQKQGNAILSSLSQMLPDSQP-QSAPEIAllQ 94
Cdd:COG3944 1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVSTSSGSDASDLYQGIQTAQQLvNTYAELL--K 78
|
90 100
....*....|....*....|
gi 1575750972 95 SRMILGKTVDDLNLQTKIEQ 114
Cdd:COG3944 79 SPAVLEEVIDELGLDLSPEE 98
|
|
| WzzB |
COG3765 |
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ... |
5-61 |
1.28e-07 |
|
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442979 [Multi-domain] Cd Length: 364 Bit Score: 54.21 E-value: 1.28e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1575750972 5 MTNKNSSQEADEMDLGRLIGELIDYRKLIFAITVGFTGIGILYAFFATPIYQANALI 61
Cdd:COG3765 10 YPNQYPPSQDDEIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTSTAIV 66
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
258-374 |
5.83e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 258 ARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLNAYRKQKDSVDLTM--EAKTVLDQIVNVDNQLNELTFKEAEISQLYTQ 335
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpaSAEEFAALRAEAAALLEALEEELEALEEALAE 409
|
90 100 110
....*....|....*....|....*....|....*....
gi 1575750972 336 EHPTYKALMEKRKTLQQEKSKLNKRVSSMPSTQQEVLRL 374
Cdd:COG4913 410 AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
530-663 |
6.01e-05 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 44.96 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 530 GASPNAGKTFVSSNLAVIMAH-AGSKVLYIDADMRKGYAHKLFGSEKNKGLSDILS-----GKSSVKDAITNLPnAGFDY 603
Cdd:cd03111 7 GAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIQnldrlDRTLLDSAVTRHS-SGLSL 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1575750972 604 IPRgqvpPNPAELLMH---PRFEALLGEVSKNYDLIIVDTPPILAVTDAAVIgRYAGTTLIVA 663
Cdd:cd03111 86 LPA----PQELEDLEAlgaEQVDKLLQVLRAFYDHIIVDLGHFLDEVTLAVL-EAADEILLVT 143
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
339-561 |
2.36e-04 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 43.90 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 339 TYKALMEKRKTLQQEKSKLN---------KRVSSMPSTQQEVLRLSrdVESGRAvylqllnrQQELNIAKSSA------- 402
Cdd:COG3944 72 TYAELLKSPAVLEEVIDELGldlspeelaKKISVTSPPDTQVITIT--VTDTDP--------ERAADIANAVAevfaeev 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 403 -----IGNVRIIDDAVPQPKPVKPKKIVVVLVSFILGLFFSLSFVLLRVFLRRGIESPEQLEDigisvYAGIPVSeslsk 477
Cdd:COG3944 142 kelmkVDNVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIER-----LLGLLLG----- 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 478 dnkRSGSKRKQESSVLLALENPADLAIEAIRSLRTSLHFAMMEAKNNVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLY 557
Cdd:COG3944 212 ---GAVPAARSARPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLV 288
|
....
gi 1575750972 558 IDAD 561
Cdd:COG3944 289 LADL 292
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
240-400 |
9.75e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 9.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 240 LVAKILDSISQNyLAQNVARQAAQDAKSLEFLDQQLPKVRSDLDIAEDKLnayRKQKDSVDLTMEAKTVLDQIVNVDNQL 319
Cdd:PRK04863 481 LVRKIAGEVSRS-EAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRL---RQQQRAERLLAEFCKRLGKNLDDEDEL 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 320 NELTFK-EAEISQLYTQEhptyKALMEKRKTLQQEKSKLNKRVSSMPSTQQEVL----RLSR-------DVESGRAV--- 384
Cdd:PRK04863 557 EQLQEElEARLESLSESV----SEARERRMALRQQLEQLQARIQRLAARAPAWLaaqdALARlreqsgeEFEDSQDVtey 632
|
170
....*....|....*.
gi 1575750972 385 YLQLLNRQQELNIAKS 400
Cdd:PRK04863 633 MQQLLERERELTVERD 648
|
|
| MinD |
cd02036 |
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ... |
536-672 |
1.37e-03 |
|
septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.
Pssm-ID: 349756 [Multi-domain] Cd Length: 236 Bit Score: 41.03 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 536 GKTFVSSNLAVIMAHAGSKVLYIDAD--MRKgyAHKLFGSEK--NKGLSDILSGKSSVKDAITNLP-NAGFDYIPRGQVP 610
Cdd:cd02036 13 GKTTTTANLGVALAKLGKKVLLIDADigLRN--LDLILGLENriVYTLVDVLEGECRLEQALIKDKrWENLYLLPASQTR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 611 PNPAelLMHPRFEALLGEVSKNYDLIIVD-----------------------TPPILAVTDAAVIGRY---AGTT---LI 661
Cdd:cd02036 91 DKDA--LTPEKLEELVKELKDSFDFILIDspagiesgfinaiapadeaiivtNPEISSVRDADRVIGLlesKGIVnigLI 168
|
170
....*....|.
gi 1575750972 662 VARFEKDTVKE 672
Cdd:cd02036 169 VNRYRPEMVKS 179
|
|
| TadZ-like |
cd17869 |
pilus assembly protein TadZ; Pilus assembly protein TadZ is involved in the production of a ... |
527-641 |
1.50e-03 |
|
pilus assembly protein TadZ; Pilus assembly protein TadZ is involved in the production of a variant of type IV pili. It is part of the SIMIBI superfamily which contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349778 [Multi-domain] Cd Length: 219 Bit Score: 40.60 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 527 MISGASP--NAGKTFVSSNLAVIMAHAGSKVLYIDADmRKGYAHKLFGSEKNKGLSDIL-------SGKSSVKDAITNLP 597
Cdd:cd17869 5 VITFHSPcgGSGKSTVAAACAYTLAEKGKKTLYLNME-RLQSTDVFFGASGRYLMSDHLytlksrkANLADKLESCVKQH 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1575750972 598 NAGFDYIPrgqvPPNPAELLMHPRFEALLGEVSK-----NYDLIIVDTP 641
Cdd:cd17869 84 ESGVYYFS----PFKSALDILEIKKDDILHMITKlveahAYDYIIMDLS 128
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
535-561 |
2.01e-03 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 39.06 E-value: 2.01e-03
10 20
....*....|....*....|....*..
gi 1575750972 535 AGKTFVSSNLAVIMAHAGSKVLYIDAD 561
Cdd:cd02042 12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
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| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
524-561 |
2.12e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 38.18 E-value: 2.12e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1575750972 524 NVLMISGASPNAGKTFVSSNLAVIMAHAGSKVLYIDAD 561
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
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| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
521-640 |
2.16e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 40.65 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1575750972 521 AKNNVLMISGAsPNAGKTFVSSNLAVIMAHAGS---------KVLYIDADMRKGYAHKLfgseknkgLSDILSGKSSVKD 591
Cdd:COG3598 11 PEGGVTLLAGP-PGTGKSFLALQLAAAVAAGGPwlgrrvppgKVLYLAAEDDRGELRRR--------LKALGADLGLPFA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1575750972 592 AITnlpnAGFDYIPRGQVPPNPAELlmhPRFEALLGEvsKNYDLIIVDT 640
Cdd:COG3598 82 DLD----GRLRLLSLAGDLDDTDDL---EALERAIEE--EGPDLVVIDP 121
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