NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1573713052|dbj|BBG84299|]
View 

sodium:glutamate symporter [Aeromonas hydrophila]

Protein Classification

dicarboxylate/amino acid:cation symporter( domain architecture ID 10448728)

dicarboxylate/amino acid:cation symporter facilitates H+ or Na+ symport with C4-dicarboxylates, dicarboxylic amino acids (aspartate, glutamate) or other amino acids; belongs to the sodium:dicarboxylate symporter family

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SDF pfam00375
Sodium:dicarboxylate symporter family;
22-377 3.67e-70

Sodium:dicarboxylate symporter family;


:

Pssm-ID: 425646 [Multi-domain]  Cd Length: 388  Bit Score: 225.48  E-value: 3.67e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  22 PEWVARVLFTAKTVIGQLITFTIPLIIlFFIMSGIASL--PKNSGKLLGKTVALSYCSTILAGLFAFTVASNLIPRLTTA 99
Cdd:pfam00375  20 PELAAWLKPLGDLFIRLLKMIIVPLIF-ASIISGIASLgdGKKLGKLGGKTLLYFLVTTAIAALIGLLVANVFQPGSGLA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 100 AEPTAESVIK------LASYINLEIPPLF-------GVMSALAAAFVFGIGISA--TQATDLRRVADQGRDIIDRLLAKV 164
Cdd:pfam00375  99 LIAASLKEAKaaeapsLLDFILNIIPSNIfealaegNVLAVIVFAILFGIALAAlgEKGEPLLNFIESLQEVMMKVIGWV 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 165 IIpLLPFYIAGVFVEMTVEgTVFATLKTFGVVLVMAIVMHWLWLSVLFVGTGLALGR-SPAQLIKNMLPAYFTALGTMSS 243
Cdd:pfam00375 179 MK-LAPIGVFALIANTVGT-YGLGILSSLAKFLLVVYLGLAIHLLIVYPLLIKFLGKvNPFKFLKKMLPALLTAFSTASS 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 244 AATIPVALQ-ASKNNGVSDGIANFTVPLCATIHLCGSTITLVTCAtavMFLSEHLAIP-GIDTMLPFIMMLGVIMIAAPG 321
Cdd:pfam00375 257 AATLPVTLEcAEKNLGVSESIASFVLPLGATINMDGTAIYLAVAA---IFIAQAYGVDlSFGQQLTLVLTATLASIGAAG 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1573713052 322 APGGGVMsALGLLTSMLGFGEASIALMIALYLAQDSFGTACNVTGDGVIALWADRF 377
Cdd:pfam00375 334 VPGGGLV-ALGLVLSALGLPLEGIALILAIDRLLDMFRTAVNVTGDAAAAVIVAKL 388
 
Name Accession Description Interval E-value
SDF pfam00375
Sodium:dicarboxylate symporter family;
22-377 3.67e-70

Sodium:dicarboxylate symporter family;


Pssm-ID: 425646 [Multi-domain]  Cd Length: 388  Bit Score: 225.48  E-value: 3.67e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  22 PEWVARVLFTAKTVIGQLITFTIPLIIlFFIMSGIASL--PKNSGKLLGKTVALSYCSTILAGLFAFTVASNLIPRLTTA 99
Cdd:pfam00375  20 PELAAWLKPLGDLFIRLLKMIIVPLIF-ASIISGIASLgdGKKLGKLGGKTLLYFLVTTAIAALIGLLVANVFQPGSGLA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 100 AEPTAESVIK------LASYINLEIPPLF-------GVMSALAAAFVFGIGISA--TQATDLRRVADQGRDIIDRLLAKV 164
Cdd:pfam00375  99 LIAASLKEAKaaeapsLLDFILNIIPSNIfealaegNVLAVIVFAILFGIALAAlgEKGEPLLNFIESLQEVMMKVIGWV 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 165 IIpLLPFYIAGVFVEMTVEgTVFATLKTFGVVLVMAIVMHWLWLSVLFVGTGLALGR-SPAQLIKNMLPAYFTALGTMSS 243
Cdd:pfam00375 179 MK-LAPIGVFALIANTVGT-YGLGILSSLAKFLLVVYLGLAIHLLIVYPLLIKFLGKvNPFKFLKKMLPALLTAFSTASS 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 244 AATIPVALQ-ASKNNGVSDGIANFTVPLCATIHLCGSTITLVTCAtavMFLSEHLAIP-GIDTMLPFIMMLGVIMIAAPG 321
Cdd:pfam00375 257 AATLPVTLEcAEKNLGVSESIASFVLPLGATINMDGTAIYLAVAA---IFIAQAYGVDlSFGQQLTLVLTATLASIGAAG 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1573713052 322 APGGGVMsALGLLTSMLGFGEASIALMIALYLAQDSFGTACNVTGDGVIALWADRF 377
Cdd:pfam00375 334 VPGGGLV-ALGLVLSALGLPLEGIALILAIDRLLDMFRTAVNVTGDAAAAVIVAKL 388
GltP COG1301
Na+/H+-dicarboxylate symporter [Energy production and conversion];
22-377 5.00e-29

Na+/H+-dicarboxylate symporter [Energy production and conversion];


Pssm-ID: 440912 [Multi-domain]  Cd Length: 406  Bit Score: 116.75  E-value: 5.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  22 PEWVARVLFTAKTVIGQLITFTIPLIILFFIMSGIASL--PKNSGKLLGKTVALSYCSTILAGLFAFTVA------SNLI 93
Cdd:COG1301    24 PELVAAVLKPLGDIFINLLKMIVVPLVFFSIVVGIASLgdLKKLGRIGGKTLLYFLVTTTIALVIGLVVAnlfqpgAGLN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  94 PRLTTAAEPTAESVIKLASYINLEIPP-LFGVMSA------LAAAFVFGIGISAT--QATDLRRVADQGRDIIDRLLaKV 164
Cdd:COG1301   104 LDLADAAAAEAAEAPSLLDFLLNIIPSnIFEAFAEgnmlqiIFFAILFGIALAALgeKGKPLLDFFESLSEVMFKIV-GW 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 165 IIPLLPF----YIAGVFVEMTVEgtVFATLKTFGVVLVMAIVMHWLWlsVLFVGTGLALGRSPAQLIKNMLPAYFTALGT 240
Cdd:COG1301   183 VMKLAPIgvfaLIAATVAKYGLD--ALGSLGKLVLTVYLALLLHLFV--VLPLILRLLTGLSPLKFLRAIRPALLLAFST 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 241 MSSAATIPVALQ-ASKNNGVSDGIANFTVPLCATIHLCGSTITLvtcATAVMFLSEHLAIP-GIDTMLPFIMMLGVIMIA 318
Cdd:COG1301   259 SSSEATLPVTMEkAEEKLGVSKSVASFVLPLGATINMDGTAIYQ---AVAALFIAQAYGIDlSLGQQLTIVLTAVLASIG 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1573713052 319 APGAPGGGVMSALGLLTSMlGFGEASIALMIALYLAQDSFGTACNVTGDGVIALWADRF 377
Cdd:COG1301   336 AAGVPGAGLVMLAAVLSAV-GLPLEGIALILGIDRILDMARTAVNVTGDAVATVVVAKW 393
PRK13628 PRK13628
serine/threonine transporter SstT; Provisional
 45-339 7.44e-05

serine/threonine transporter SstT; Provisional


Pssm-ID: 184190 [Multi-domain]  Cd Length: 402  Bit Score: 44.47  E-value: 7.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  45 PLIILFFIMSGIASLPKNSGKLLGKTVALSYCSTILAGLFAfTVASNLIP-RLTTAAEPTAES-------VIKlASYINL 116
Cdd:PRK13628   57 PILVFVLVMASIANHKKGQKTNIRPILVLYLLGTFLAALVA-VVASFLFPsTLVLVASAADISppqgiveVLK-TLLLSL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 117 EIPPLFGVMSA-----LAAAFVFGIGisatqatdLRRVADQGRDIIDRL------LAKVIIPLLPFYIAGVfVEMTVEGT 185
Cdd:PRK13628  135 VDNPINALLNAnyigiLAWAIGLGLA--------LRHASDTTKNVVNDLseavsqIVKWVIRFAPIGIFGL-VASTLAET 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 186 VFATLKTFG---VVLVMAIVMHWLWLSVLFVGtgLALGRSPAQLIKNML-PAYFTALGTMSSAATIPVALQASKNNGVSD 261
Cdd:PRK13628  206 GFSALAGYAqllAVLVGCMLFVALVVNPLIVF--WKIRRNPYPLVFTCLrESGVTAFFTRSSAANIPVNMALCEKLGLDE 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 262 GIANFTVPLCATIHLCGS--TITLVTCATAVMFlsehlaipGIDTMLPFIMMLGVI-MIAAPGAPG--GGVMSALGLLTS 336
Cdd:PRK13628  284 DTYSVSIPLGATINMAGAaiTITVLTLAAVHTL--------GIPVDLPTALLLSVVaAISACGASGvaGGSLLLIPLACS 355


                  ...
gi 1573713052 337 MLG 339
Cdd:PRK13628  356 LFG 358
 
Name Accession Description Interval E-value
SDF pfam00375
Sodium:dicarboxylate symporter family;
22-377 3.67e-70

Sodium:dicarboxylate symporter family;


Pssm-ID: 425646 [Multi-domain]  Cd Length: 388  Bit Score: 225.48  E-value: 3.67e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  22 PEWVARVLFTAKTVIGQLITFTIPLIIlFFIMSGIASL--PKNSGKLLGKTVALSYCSTILAGLFAFTVASNLIPRLTTA 99
Cdd:pfam00375  20 PELAAWLKPLGDLFIRLLKMIIVPLIF-ASIISGIASLgdGKKLGKLGGKTLLYFLVTTAIAALIGLLVANVFQPGSGLA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 100 AEPTAESVIK------LASYINLEIPPLF-------GVMSALAAAFVFGIGISA--TQATDLRRVADQGRDIIDRLLAKV 164
Cdd:pfam00375  99 LIAASLKEAKaaeapsLLDFILNIIPSNIfealaegNVLAVIVFAILFGIALAAlgEKGEPLLNFIESLQEVMMKVIGWV 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 165 IIpLLPFYIAGVFVEMTVEgTVFATLKTFGVVLVMAIVMHWLWLSVLFVGTGLALGR-SPAQLIKNMLPAYFTALGTMSS 243
Cdd:pfam00375 179 MK-LAPIGVFALIANTVGT-YGLGILSSLAKFLLVVYLGLAIHLLIVYPLLIKFLGKvNPFKFLKKMLPALLTAFSTASS 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 244 AATIPVALQ-ASKNNGVSDGIANFTVPLCATIHLCGSTITLVTCAtavMFLSEHLAIP-GIDTMLPFIMMLGVIMIAAPG 321
Cdd:pfam00375 257 AATLPVTLEcAEKNLGVSESIASFVLPLGATINMDGTAIYLAVAA---IFIAQAYGVDlSFGQQLTLVLTATLASIGAAG 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1573713052 322 APGGGVMsALGLLTSMLGFGEASIALMIALYLAQDSFGTACNVTGDGVIALWADRF 377
Cdd:pfam00375 334 VPGGGLV-ALGLVLSALGLPLEGIALILAIDRLLDMFRTAVNVTGDAAAAVIVAKL 388
GltP COG1301
Na+/H+-dicarboxylate symporter [Energy production and conversion];
22-377 5.00e-29

Na+/H+-dicarboxylate symporter [Energy production and conversion];


Pssm-ID: 440912 [Multi-domain]  Cd Length: 406  Bit Score: 116.75  E-value: 5.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  22 PEWVARVLFTAKTVIGQLITFTIPLIILFFIMSGIASL--PKNSGKLLGKTVALSYCSTILAGLFAFTVA------SNLI 93
Cdd:COG1301    24 PELVAAVLKPLGDIFINLLKMIVVPLVFFSIVVGIASLgdLKKLGRIGGKTLLYFLVTTTIALVIGLVVAnlfqpgAGLN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  94 PRLTTAAEPTAESVIKLASYINLEIPP-LFGVMSA------LAAAFVFGIGISAT--QATDLRRVADQGRDIIDRLLaKV 164
Cdd:COG1301   104 LDLADAAAAEAAEAPSLLDFLLNIIPSnIFEAFAEgnmlqiIFFAILFGIALAALgeKGKPLLDFFESLSEVMFKIV-GW 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 165 IIPLLPF----YIAGVFVEMTVEgtVFATLKTFGVVLVMAIVMHWLWlsVLFVGTGLALGRSPAQLIKNMLPAYFTALGT 240
Cdd:COG1301   183 VMKLAPIgvfaLIAATVAKYGLD--ALGSLGKLVLTVYLALLLHLFV--VLPLILRLLTGLSPLKFLRAIRPALLLAFST 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 241 MSSAATIPVALQ-ASKNNGVSDGIANFTVPLCATIHLCGSTITLvtcATAVMFLSEHLAIP-GIDTMLPFIMMLGVIMIA 318
Cdd:COG1301   259 SSSEATLPVTMEkAEEKLGVSKSVASFVLPLGATINMDGTAIYQ---AVAALFIAQAYGIDlSLGQQLTIVLTAVLASIG 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1573713052 319 APGAPGGGVMSALGLLTSMlGFGEASIALMIALYLAQDSFGTACNVTGDGVIALWADRF 377
Cdd:COG1301   336 AAGVPGAGLVMLAAVLSAV-GLPLEGIALILGIDRILDMARTAVNVTGDAVATVVVAKW 393
PRK13628 PRK13628
serine/threonine transporter SstT; Provisional
 45-339 7.44e-05

serine/threonine transporter SstT; Provisional


Pssm-ID: 184190 [Multi-domain]  Cd Length: 402  Bit Score: 44.47  E-value: 7.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  45 PLIILFFIMSGIASLPKNSGKLLGKTVALSYCSTILAGLFAfTVASNLIP-RLTTAAEPTAES-------VIKlASYINL 116
Cdd:PRK13628   57 PILVFVLVMASIANHKKGQKTNIRPILVLYLLGTFLAALVA-VVASFLFPsTLVLVASAADISppqgiveVLK-TLLLSL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 117 EIPPLFGVMSA-----LAAAFVFGIGisatqatdLRRVADQGRDIIDRL------LAKVIIPLLPFYIAGVfVEMTVEGT 185
Cdd:PRK13628  135 VDNPINALLNAnyigiLAWAIGLGLA--------LRHASDTTKNVVNDLseavsqIVKWVIRFAPIGIFGL-VASTLAET 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 186 VFATLKTFG---VVLVMAIVMHWLWLSVLFVGtgLALGRSPAQLIKNML-PAYFTALGTMSSAATIPVALQASKNNGVSD 261
Cdd:PRK13628  206 GFSALAGYAqllAVLVGCMLFVALVVNPLIVF--WKIRRNPYPLVFTCLrESGVTAFFTRSSAANIPVNMALCEKLGLDE 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 262 GIANFTVPLCATIHLCGS--TITLVTCATAVMFlsehlaipGIDTMLPFIMMLGVI-MIAAPGAPG--GGVMSALGLLTS 336
Cdd:PRK13628  284 DTYSVSIPLGATINMAGAaiTITVLTLAAVHTL--------GIPVDLPTALLLSVVaAISACGASGvaGGSLLLIPLACS 355


                  ...
gi 1573713052 337 MLG 339
Cdd:PRK13628  356 LFG 358
TcyP COG1823
L-cystine transporter TcyP, sodium:dicarboxylate symporter family [Amino acid transport and ...
 130-366 1.07e-04

L-cystine transporter TcyP, sodium:dicarboxylate symporter family [Amino acid transport and metabolism];


Pssm-ID: 441428  Cd Length: 463  Bit Score: 44.05  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 130 AAFvfgIGISATQAtdLRRVADQG---RDIIDRL------LAKVIIPLLPFyiaGVFVEMT--VEGTVFATLKTFG---- 194
Cdd:COG1823   194 AAF---LGIAALGL--RRKKPEQAetfLKGIDALqaivmrLVRLVLRLTPY---GVLALMTkvVATSDFADILNLGkfvv 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 195 ---VVLVMAIVMHWLWLSVLfvgtglalGRSPAQLIKNMLPAYFTALGTMSSAATIPVALQASKNN-GVSDGIANFTVPL 270
Cdd:COG1823   266 asyVALIIMFIVHLLLLALA--------GLNPLTYFKKVWPVLTFAFTSRSSAGTIPLNIETQTKRlGVPEGIANFAASF 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 271 CATIHLCGstitlvtCA------TAVMflsehLAIP-GIDTMLP-FIMML-GVIMIA---APGAPGGGVMSALGLLTSMl 338
Cdd:COG1823   338 GATIGQNG-------CAgiypamLAVM-----IAPTvGINPLDPsFILTLiAVVTISsfgVAGVGGGATFAALIVLSAM- 404

                         250       260
                  ....*....|....*....|....*...
gi 1573713052 339 GFGEASIALMIALYLAQDSFGTACNVTG 366
Cdd:COG1823   405 GLPVALAGLLISIEPLIDMGRTALNVSG 432
PRK14695 PRK14695
serine/threonine transporter SstT; Provisional
 128-382 3.34e-04

serine/threonine transporter SstT; Provisional


Pssm-ID: 173158  Cd Length: 319  Bit Score: 42.34  E-value: 3.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 128 LAAAFVFGIGI---SATQATDLRRVADQGRDIIDRllakvIIPLLPFYIAGVfVEMTVEGTVFATLKTFGVVLV-MAIVM 203
Cdd:PRK14695   65 LSWAVIFGIAMreaSKNSKELLKTIADVTSKIVEW-----IINLAPFGILGL-VFKTISDKGVGSLANYGILLVlLVTTM 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 204 HWLWLSVLFVGTGLALGRSPAQLIKNMLPAY-FTALGTMSSAATIPVALQASKNNGVSDGIANFTVPLCATIHLCGSTIT 282
Cdd:PRK14695  139 LFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSgVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINMAGVAIT 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 283 LvtcATAVMFLSEHLAIPgIDTMLPFIMMLgVIMIAAPGAPG--GGVMSALGLLTSMLGFGE----ASIALMIALYLAQD 356
Cdd:PRK14695  219 I---NLLTLVTVNTLGIP-VDFATAFVLSV-VAAISACGASGiaGGSLLLIPVACSLFGISNdiaiQIVGVGFVIGVIQD 293

                         250       260
                  ....*....|....*....|....*.
gi 1573713052 357 SFGTACNVTGDGVIALWADRFAQSDK 382
Cdd:PRK14695  294 SCETALNSSTDVLFTAVAEYAATRKK 319
SstT COG3633
Na+/serine and Na+/threonine symporter SstT [Amino acid transport and metabolism];
45-289 6.71e-04

Na+/serine and Na+/threonine symporter SstT [Amino acid transport and metabolism];


Pssm-ID: 442850  Cd Length: 406  Bit Score: 41.70  E-value: 6.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052  45 PLIILFFIMSGIASLPKNSGKLLGKTVALSYCSTILAGLFAfTVASNLIP-RLTTAAEPTAES-------VIKlASYINL 116
Cdd:COG3633    56 PILVFVLVMSAIANHKQGQKTNMKPIIVLYLLGTFLAALVA-VVASFLFPtTLTLVAAAADLTppggigeVLK-TLLLNV 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 117 EIPPLFGVMSA-----LAAAFVFGIGisatqatdLRRVADQGRDIIDRL------LAKVIIPLLPFYIAGVfVEMTVEGT 185
Cdd:COG3633   134 VDNPVNALANAnyigiLAWAIGLGLA--------LRHASDTTKTVLSDLsdavskIVRWVIRFAPLGIFGL-VASTVATT 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573713052 186 VFATLKTFG---VVLV--MAIVMhwLWLSVLFVGtgLALGRSPAQLI-KNMLPAYFTALGTMSSAATIPVALQASKNNGV 259
Cdd:COG3633   205 GFSALLGYAhllAVLVgcMLFVA--LVVNPLIVF--LKIRRNPYPLVfTCLRESGITAFFTRSSAANIPVNMALCEKLGL 280

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1573713052 260 SDGIANFTVPLCATIHLCGS--TITLVTCATA 289
Cdd:COG3633   281 DEDTYSVSIPLGATINMAGAaiTITVLTLAAV 312
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH