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Conserved domains on  [gi|1573267448|gb|RZC72673|]
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hypothetical protein C5167_048156 [Papaver somniferum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 307-411 4.12e-05

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


:

Pssm-ID: 461417  Cd Length: 99  Bit Score: 42.70  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573267448 307 WHTDLMStIQADTPYCCMALWCgPCVSYMlRKRAIYNDMRRYVCCAGYLPCSGRCGeskCPEFCLATevclcfgnsvAST 386
Cdd:pfam04749   1 WSTGLFD-CFSDCGTCLLGCCC-PCVLFG-RNAERLDRGNTSCLLAGFAAFCGLTG---CGLGWIYS----------CLQ 64

                          90       100
                  ....*....|....*....|....*
gi 1573267448 387 RFLLQDEFNIQTTQCDNCIIGFmFC 411
Cdd:pfam04749  65 RGKIREKYGIEGSPCGDCCVHC-CC 88
XYPPX pfam02162
XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally ...
 537-551 5.21e-04

XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII, the carboxy tail of certain rhodopsins. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in Swiss:Q25460. The molecular function of this repeat is unknown. It is also not clear if all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.


:

Pssm-ID: 145362  Cd Length: 15  Bit Score: 37.31  E-value: 5.21e-04
                          10
                  ....*....|....*
gi 1573267448 537 GYPPQGYPPAGYPPA 551
Cdd:pfam02162   1 GYPPQGYPPQGYPPQ 15
 
Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 307-411 4.12e-05

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 42.70  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573267448 307 WHTDLMStIQADTPYCCMALWCgPCVSYMlRKRAIYNDMRRYVCCAGYLPCSGRCGeskCPEFCLATevclcfgnsvAST 386
Cdd:pfam04749   1 WSTGLFD-CFSDCGTCLLGCCC-PCVLFG-RNAERLDRGNTSCLLAGFAAFCGLTG---CGLGWIYS----------CLQ 64

                          90       100
                  ....*....|....*....|....*
gi 1573267448 387 RFLLQDEFNIQTTQCDNCIIGFmFC 411
Cdd:pfam04749  65 RGKIREKYGIEGSPCGDCCVHC-CC 88
XYPPX pfam02162
XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally ...
 537-551 5.21e-04

XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII, the carboxy tail of certain rhodopsins. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in Swiss:Q25460. The molecular function of this repeat is unknown. It is also not clear if all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.


Pssm-ID: 145362  Cd Length: 15  Bit Score: 37.31  E-value: 5.21e-04
                          10
                  ....*....|....*
gi 1573267448 537 GYPPQGYPPAGYPPA 551
Cdd:pfam02162   1 GYPPQGYPPQGYPPQ 15
 
Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 307-411 4.12e-05

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 42.70  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573267448 307 WHTDLMStIQADTPYCCMALWCgPCVSYMlRKRAIYNDMRRYVCCAGYLPCSGRCGeskCPEFCLATevclcfgnsvAST 386
Cdd:pfam04749   1 WSTGLFD-CFSDCGTCLLGCCC-PCVLFG-RNAERLDRGNTSCLLAGFAAFCGLTG---CGLGWIYS----------CLQ 64

                          90       100
                  ....*....|....*....|....*
gi 1573267448 387 RFLLQDEFNIQTTQCDNCIIGFmFC 411
Cdd:pfam04749  65 RGKIREKYGIEGSPCGDCCVHC-CC 88
XYPPX pfam02162
XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally ...
 537-551 5.21e-04

XYPPX repeat (two copies); This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII, the carboxy tail of certain rhodopsins. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in Swiss:Q25460. The molecular function of this repeat is unknown. It is also not clear if all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.


Pssm-ID: 145362  Cd Length: 15  Bit Score: 37.31  E-value: 5.21e-04
                          10
                  ....*....|....*
gi 1573267448 537 GYPPQGYPPAGYPPA 551
Cdd:pfam02162   1 GYPPQGYPPQGYPPQ 15
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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