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Conserved domains on  [gi|1572878853|gb|RZB70544|]
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hypothetical protein D0Y65_035491 [Glycine soja]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GP46 super family cl46388
Phage protein GP46; This family contains GP46 phage proteins (approximately 120 residues long).
 294-358 7.04e-03

Phage protein GP46; This family contains GP46 phage proteins (approximately 120 residues long).


The actual alignment was detected with superfamily member COG4381:

Pssm-ID: 480728  Cd Length: 145  Bit Score: 36.92  E-value: 7.04e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1572878853 294 TWARSATEDASPDynsdAEGDRFSWWA--FPAPPdLRSR-WEracTQRVVDGSRTDRLARDWSR---AWLI 358
Cdd:COG4381    38 TDRRADPDDELPD----GTGDRRGWWGdsYADRP-LGSRlWL---LRREKDTSRVLLLARQYAEealQWLI 100
 
Name Accession Description Interval E-value
gp46 COG4381
Mu-like prophage protein gp46 [Mobilome: prophages, transposons];
294-358 7.04e-03

Mu-like prophage protein gp46 [Mobilome: prophages, transposons];


Pssm-ID: 443507  Cd Length: 145  Bit Score: 36.92  E-value: 7.04e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1572878853 294 TWARSATEDASPDynsdAEGDRFSWWA--FPAPPdLRSR-WEracTQRVVDGSRTDRLARDWSR---AWLI 358
Cdd:COG4381    38 TDRRADPDDELPD----GTGDRRGWWGdsYADRP-LGSRlWL---LRREKDTSRVLLLARQYAEealQWLI 100
 
Name Accession Description Interval E-value
gp46 COG4381
Mu-like prophage protein gp46 [Mobilome: prophages, transposons];
294-358 7.04e-03

Mu-like prophage protein gp46 [Mobilome: prophages, transposons];


Pssm-ID: 443507  Cd Length: 145  Bit Score: 36.92  E-value: 7.04e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1572878853 294 TWARSATEDASPDynsdAEGDRFSWWA--FPAPPdLRSR-WEracTQRVVDGSRTDRLARDWSR---AWLI 358
Cdd:COG4381    38 TDRRADPDDELPD----GTGDRRGWWGdsYADRP-LGSRlWL---LRREKDTSRVLLLARQYAEealQWLI 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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