NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157276557|gb|ABV28825|]
View 

breast cancer susceptibility 1, partial [Crocidura fuliginosa]

Protein Classification

BRCT-associated domain-containing protein( domain architecture ID 10581880)

BRCT (BRCA1 C-terminus)-associated domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
BRCT_assoc pfam12820
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
35-196 1.65e-66

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


:

Pssm-ID: 463719  Cd Length: 164  Bit Score: 204.62  E-value: 1.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557   35 PLYGRRKLNKQKLSCSDSPEDPQEMTWMTSKSSLQKVNDWFSRSDDVLTSDDFHDAGSNSNTKAETE-EIPSAADGVFVS 113
Cdd:pfam12820   2 PLCGRKELPKQKPPCPETPRDTQDVSWITLNSSIQKVNEWFSRSDEILTSDDSHDRRSESNAEVAGAlEVPNEVDGYSGS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557  114 SEEEDLMASDQCDALTYESRRVLSKPVESSIEDKIFGKTYRRKASFPNLNCTTEDVTLESSLLEPHIAHKHPFTNKLKRK 193
Cdd:pfam12820  82 SEKIDLMADDPHGALICESERVHSKPVENNIEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHPLTNKLKRK 161

                  ...
gi 157276557  194 RIT 196
Cdd:pfam12820 162 RRT 164
 
Name Accession Description Interval E-value
BRCT_assoc pfam12820
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
35-196 1.65e-66

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


Pssm-ID: 463719  Cd Length: 164  Bit Score: 204.62  E-value: 1.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557   35 PLYGRRKLNKQKLSCSDSPEDPQEMTWMTSKSSLQKVNDWFSRSDDVLTSDDFHDAGSNSNTKAETE-EIPSAADGVFVS 113
Cdd:pfam12820   2 PLCGRKELPKQKPPCPETPRDTQDVSWITLNSSIQKVNEWFSRSDEILTSDDSHDRRSESNAEVAGAlEVPNEVDGYSGS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557  114 SEEEDLMASDQCDALTYESRRVLSKPVESSIEDKIFGKTYRRKASFPNLNCTTEDVTLESSLLEPHIAHKHPFTNKLKRK 193
Cdd:pfam12820  82 SEKIDLMADDPHGALICESERVHSKPVENNIEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHPLTNKLKRK 161

                  ...
gi 157276557  194 RIT 196
Cdd:pfam12820 162 RRT 164
 
Name Accession Description Interval E-value
BRCT_assoc pfam12820
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
35-196 1.65e-66

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


Pssm-ID: 463719  Cd Length: 164  Bit Score: 204.62  E-value: 1.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557   35 PLYGRRKLNKQKLSCSDSPEDPQEMTWMTSKSSLQKVNDWFSRSDDVLTSDDFHDAGSNSNTKAETE-EIPSAADGVFVS 113
Cdd:pfam12820   2 PLCGRKELPKQKPPCPETPRDTQDVSWITLNSSIQKVNEWFSRSDEILTSDDSHDRRSESNAEVAGAlEVPNEVDGYSGS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157276557  114 SEEEDLMASDQCDALTYESRRVLSKPVESSIEDKIFGKTYRRKASFPNLNCTTEDVTLESSLLEPHIAHKHPFTNKLKRK 193
Cdd:pfam12820  82 SEKIDLMADDPHGALICESERVHSKPVENNIEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHPLTNKLKRK 161

                  ...
gi 157276557  194 RIT 196
Cdd:pfam12820 162 RRT 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH