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Conserved domains on  [gi|157003964|gb|ABV00553|]
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ATP synthase F0 subunit 6 (mitochondrion) [Rostratula australis]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009573)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 3.49e-108

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177181  Cd Length: 227  Bit Score: 310.22  E-value: 3.49e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
 
Name Accession Description Interval E-value
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 3.49e-108

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 310.22  E-value: 3.49e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-227 7.26e-46

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 151.98  E-value: 7.26e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964    6 FDQFTSP--YLLGIPLILISTMFP---ALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:TIGR01131   2 FSQFDISpiTLFSLTLLSLILLLSlliFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964  161 LTANLTAGHLLIQLTSTATIALLPliPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 6.15e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 119.04  E-value: 6.15e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  66 GHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157003964 146 ETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPLiptVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 1.03e-27

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 104.88  E-value: 1.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   63 NKKGHKWALIFTSLMTFLL---MTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSAS-LGHLLPEGTPTPL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  139 IPALIMIETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 157003964  219 LTLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 54-225 6.12e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.96  E-value: 6.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  54 VTKQLMIPLNKKGHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQ-PSASLGHLLPE 132
Cdd:COG0356   42 VRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFP 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 133 GTPtPLIPALIMIETISLLIRPLALGVRLTANLTAGHLLIqltstATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQA 212
Cdd:COG0356  122 PFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQA 195

                        170
                 ....*....|...
gi 157003964 213 YVFVLLLTLYLQE 225
Cdd:COG0356  196 YIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 3.49e-108

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 310.22  E-value: 3.49e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 3.29e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 307.96  E-value: 3.29e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 1.30e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 301.50  E-value: 1.30e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 3.26e-80

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 239.46  E-value: 3.26e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.64e-78

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 234.46  E-value: 2.64e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPALLLPSPdSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTP-NRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157003964 161 LTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-227 7.26e-46

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 151.98  E-value: 7.26e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964    6 FDQFTSP--YLLGIPLILISTMFP---ALLLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFL 80
Cdd:TIGR01131   2 FSQFDISpiTLFSLTLLSLILLLSlliFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   81 LMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964  161 LTANLTAGHLLIQLTSTATIALLPliPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-227 9.71e-45

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 148.97  E-value: 9.71e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLILISTMFPAL-LLPSPDSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTF 79
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPLTLLSSVIALSwLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  80 LLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGV 159
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157003964 160 RLTANLTAGHLLIQLTSTAtIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00035 163 RLAANLTAGHLLIFLLSTA-IWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 1.94e-41

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 140.30  E-value: 1.94e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNL-SFFDQFTSPYLlgiPLILISTMFPALLLPSpdSRW-ISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMT 78
Cdd:MTH00157   3 TNLfSIFDPSTSFNL---SLNWLSTFLGLLFIPS--SFWlIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  79 FLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALG 158
Cdd:MTH00157  78 FILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLA 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 159 VRLTANLTAGHLLIQLTSTATIALLPLIptvSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00157 158 VRLAANMIAGHLLLTLLGNTGPSLSSMI---LSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 8.67e-38

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 131.31  E-value: 8.67e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIPLIL---ISTMFPALLLPSPDSRWISNRFCTMQSWlSHLVTKQLMIPLNKKGHKWALIFTSLM 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISlswITLLLFLLLMPSSVWFCPSKLQVFMLMF-STFLPEMILRSNGSYILGSASIIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  78 TFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLAL 157
Cdd:MTH00176  80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157003964 158 GVRLTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00176 160 AVRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 4-225 4.93e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 126.90  E-value: 4.93e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   4 SFFDQFTSPYLLGIPLILISTMFPALLLPSPdSRWISNRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFLLMT 83
Cdd:MTH00173   7 SSFDDHNSSFSSLSFLMWLLSLMSLFFFSSS-VWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  84 NLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTA 163
Cdd:MTH00173  86 NLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLA 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157003964 164 NLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLL-TILEVAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00173 166 NISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGyFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 6.15e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 119.04  E-value: 6.15e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  66 GHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157003964 146 ETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPLiptVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 4-222 1.03e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 107.90  E-value: 1.03e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   4 SFFDQFTSPYLLGIPLILISTMFPALLLPSPDSRWIS-NRFCTMQSWLSHLVTKQLMIPLNKKGHKWALIFTSLMTFLLM 82
Cdd:MTH00005   7 SSFDPATNSLFNNLSSTAFWAFNFSIILLLSSSFWITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  83 TNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLT 162
Cdd:MTH00005  87 MNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLA 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 163 ANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLY 222
Cdd:MTH00005 167 ANMSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 1.03e-27

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 104.88  E-value: 1.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   63 NKKGHKWALIFTSLMTFLL---MTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSAS-LGHLLPEGTPTPL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  139 IPALIMIETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 157003964  219 LTLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 9.53e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 102.81  E-value: 9.53e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGI---PLILISTMFPALLLPSPD----SRWISNRFCTMQSWlsHLVTKQlmiPLNKKGHKWALIF 73
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnsSIMMILVIIVVLLLFKGIklipKRWQSIIEIIYNHF--HGVVKD---NLGNEGLKYFPFI 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  74 TSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETISLLIR 153
Cdd:MTH00172  76 ISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISR 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157003964 154 PLALGVRLTANLTAGHLLIQLTSTATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQENI 227
Cdd:MTH00172 156 AISLGVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-227 1.20e-23

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 94.69  E-value: 1.20e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964   1 MNLSFFDQFTSPYLLGIP----------------LILISTMFPALLlpsPDSRWISNRFCTMQSWLSHLVTKQLMIPLNK 64
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQaflgdwlvtftnssmmMVLAVIIFWLLL---KGDKLIPNRWQSIMELIYLNIRSVVHDNLGK 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  65 KGHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIM 144
Cdd:MTH00175  78 SGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 145 IETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPL-IPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYL 223
Cdd:MTH00175 158 IETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237


                 ....
gi 157003964 224 QENI 227
Cdd:MTH00175 238 GDTI 241
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 54-225 6.12e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.96  E-value: 6.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  54 VTKQLMIPLNKKGHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQ-PSASLGHLLPE 132
Cdd:COG0356   42 VRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFP 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 133 GTPtPLIPALIMIETISLLIRPLALGVRLTANLTAGHLLIqltstATIALLPLIPTVSLLTTLILLLLTILEVAVAMIQA 212
Cdd:COG0356  122 PFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQA 195

                        170
                 ....*....|...
gi 157003964 213 YVFVLLLTLYLQE 225
Cdd:COG0356  196 YIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 62-225 1.79e-15

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 72.52  E-value: 1.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  62 LNKKGHKWALIFTSLMTFLLMTNLLGLLP-YTFTPTTQLSMNMALAFPLWFATLLTGLRNQpsaSLGHLLPEGTPTPlIP 140
Cdd:PRK05815  65 IGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HP 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 141 ALIMIETISLLIRPLALGVRLTANLTAGHLLIQL-----TSTATIALLPLIPTVsllttlillLLTILEVAVAMIQAYVF 215
Cdd:PRK05815 141 LLLPIEIISEFSRPISLSLRLFGNMLAGELILALiallgGAGLLLALAPLILPV---------AWTIFEIFVGTLQAYIF 211

                        170
                 ....*....|
gi 157003964 216 VLLLTLYLQE 225
Cdd:PRK05815 212 MMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 62-227 2.32e-15

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 72.66  E-value: 2.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  62 LNKKGHKWALIFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPA 141
Cdd:MTH00174  83 LGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPL 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964 142 LIMIETISLLIRPLALGVRLTANLTAGHLLIQLTSTATIALLPL-IPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLT 220
Cdd:MTH00174 163 LTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTgILIGSFVPFAILIFVTILEMAVAIIQAYVFTLLTI 242


                 ....*..
gi 157003964 221 LYLQENI 227
Cdd:MTH00174 243 VYLRDTV 249
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 90-225 4.81e-10

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 56.91  E-value: 4.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  90 PYTFTPTTQLSMNMALAFPLWFATLLTGLRNqpSASLGHLLPEGTPTPLIP-ALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:MTH00087  72 PYSFSPCGMVEFTFLYALVAWLSTFLSFLSK--SEKFSVYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVG 149

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 157003964 169 HLLIQltstatiallpLIPTVSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00087 150 HLISS-----------LLNFLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 3.76e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 55.67  E-value: 3.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  94 TPTTQLSMNMALAFPLWFATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETI-SLLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 157003964 173 qltstatIALLPLIPT-----VSLLTTLILLLLTILEVAVAMIQAYVFVLLLTLYL 223
Cdd:PRK13417 297 -------LALMGFIFQfqswgIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 90-223 1.79e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 53.59  E-value: 1.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  90 PYTFTPTTQLSMNMALAFPLWFATLLTGLRNQP-SASLGHLlPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:PRK13419 191 PYGATATGNINVTLTLAVFTFFITQYAAIKAHGiKGYLAHL-TGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAG 269

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157003964 169 HLLIqltstatIALLPLI-----PTVSLLTTL-ILLLLTILEVAVAMIQAYVFVLLLTLYL 223
Cdd:PRK13419 270 HIVI-------LSLIFISfilksYIVAVAVSVpFAIFIYLLELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 48-168 6.13e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 36.40  E-value: 6.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157003964  48 SWLSHLVTKQLMIPLNKKGHKWaliFTSLMTFLLMTNLLGLLPYTFTPTTQLSMNMALAFPLWFATLLTGLRNQPSASLG 127
Cdd:MTH00050   4 NDFSSLFSLIYKLILGGSVSYY---YSVVLFIVLFLFLLYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 157003964 128 HLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:MTH00050  81 SFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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