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Conserved domains on  [gi|1569122905|gb|QBA89594|]
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cytochrome b, partial (mitochondrion) [Leucocytozoon sp. BULIBL80]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-152 9.35e-48

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 157.64  E-value: 9.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00156   79 FFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGF 158

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-152 9.35e-48

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 157.64  E-value: 9.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00156   79 FFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGF 158

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-156 3.24e-31

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 115.27  E-value: 3.24e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNY-SFTYlP--LSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LINWVC 73
Cdd:COG1290    98 LFFAAVYLHMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLF 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  74 GGFIINDPTLKRFFVLH-FIFPFVALAIVFIHIFFLHIQGSTNPLGY-----DTPLKIPFYP-NLLTLGVKGFNYVLVLF 146
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkktEKVDGVPFHPyYTVKDGFGFFVFLGVFA 256

                         170
                  ....*....|
gi 1569122905 147 LFQSLFGIAP 156
Cdd:COG1290   257 LLAFFFPINP 266
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-114 3.00e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 105.91  E-value: 3.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYS--FTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCG 74
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGsyKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWG 160

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1569122905  75 GFIINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGST 114
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-112 4.89e-24

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 92.06  E-value: 4.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYS--FTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:pfam00033  74 FLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSF 153

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQG 112
Cdd:pfam00033 154 SVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-152 9.35e-48

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 157.64  E-value: 9.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00156   79 FFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGF 158

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00156  159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235
CYTB MTH00145
cytochrome b; Provisional
 1-152 1.27e-45

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 152.75  E-value: 1.27e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LINWVCGGF 76
Cdd:MTH00145   90 FFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYvgkmLVEWVWGGF 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00145  170 SVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246
CYTB MTH00119
cytochrome b; Provisional
 1-129 1.36e-44

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 150.05  E-value: 1.36e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00119   90 MFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGF 169

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYP 129
Cdd:MTH00119  170 SVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHP 223
CYTB MTH00191
cytochrome b; Provisional
 1-152 3.38e-42

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 143.52  E-value: 3.38e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLL----YFIPGLINWVCGGF 76
Cdd:MTH00191   86 FFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLsaipYIGDDLVQWLWGGF 165

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDT-PLKIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00191  166 SVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLF 242
CYTB MTH00131
cytochrome b; Provisional
 1-152 1.27e-41

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 142.48  E-value: 1.27e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00131   89 FFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGF 168

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00131  169 SVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDAdKISFHPYFSYKDLLGFAILLLALTSLALF 245
CYTB MTH00100
cytochrome b; Provisional
 3-152 1.73e-41

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 142.08  E-value: 1.73e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNY-SFTYLPlSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGFI 77
Cdd:MTH00100   91 FICLFLHVGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTLVEWIWGGFS 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1569122905  78 INDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDT-PLKIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00100  170 VDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245
CYTB MTH00016
cytochrome b; Validated
 1-152 7.06e-41

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 140.58  E-value: 7.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00016   90 FFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGF 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00016  170 SVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246
CYTB MTH00074
cytochrome b; Provisional
 1-152 5.75e-39

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 135.58  E-value: 5.75e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00074   90 FFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGF 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDT-PLKIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00074  170 SVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSnPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246
CYTB MTH00034
cytochrome b; Validated
 1-152 7.68e-37

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 129.83  E-value: 7.68e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00034   89 LFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGF 168

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00034  169 SVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALL 245
CYTB MTH00224
cytochrome b; Provisional
 3-152 6.48e-34

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 122.34  E-value: 6.48e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGFII 78
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAV 171

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1569122905  79 NDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDT-PLKIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLF 246
CYTB MTH00022
cytochrome b; Validated
 3-152 6.87e-34

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 122.12  E-value: 6.87e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGFII 78
Cdd:MTH00022   90 FLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFSV 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1569122905  79 NDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00022  170 SNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244
CYTB MTH00086
cytochrome b; Provisional
 1-148 1.83e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 115.42  E-value: 1.83e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00086   78 LFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGF 157

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLG-YDTPLKIPFYPNLLTLGVKGFNYVLVLFLF 148
Cdd:MTH00086  158 GVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYWNKDAYNIIFWLVFIIF 230
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-156 3.24e-31

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 115.27  E-value: 3.24e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNY-SFTYlP--LSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LINWVC 73
Cdd:COG1290    98 LFFAAVYLHMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLF 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  74 GGFIINDPTLKRFFVLH-FIFPFVALAIVFIHIFFLHIQGSTNPLGY-----DTPLKIPFYP-NLLTLGVKGFNYVLVLF 146
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkktEKVDGVPFHPyYTVKDGFGFFVFLGVFA 256

                         170
                  ....*....|
gi 1569122905 147 LFQSLFGIAP 156
Cdd:COG1290   257 LLAFFFPINP 266
CYTB MTH00053
cytochrome b; Provisional
 3-153 5.21e-31

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 114.42  E-value: 5.21e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGFII 78
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  79 NDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYP-----NLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYyyvlkDLYGAVILLIILSIIVFLFPYSL 251


                  .
gi 1569122905 153 G 153
Cdd:MTH00053  252 G 252
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-114 3.00e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 105.91  E-value: 3.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYS--FTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCG 74
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGsyKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWG 160

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1569122905  75 GFIINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGST 114
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00033
cytochrome b; Provisional
 3-156 1.32e-27

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 105.41  E-value: 1.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGFII 78
Cdd:MTH00033   88 FICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSV 167

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1569122905  79 NDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPLGY-DTPLKIPFYPNLLTLGVKGFnyvLVLFLFQSLFGIAP 156
Cdd:MTH00033  168 SNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEP 243
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-112 4.89e-24

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 92.06  E-value: 4.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   3 FILTYLHILRGLNYS--FTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:pfam00033  74 FLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSF 153

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQG 112
Cdd:pfam00033 154 SVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-117 5.77e-22

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 89.66  E-value: 5.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLPLSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLINWVCGGF 76
Cdd:MTH00046   80 VLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGF 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1569122905  77 IINDPTLKRFFVLHFIFPFVALAIVFIHIFFLHIQGSTNPL 117
Cdd:MTH00046  160 SVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-157 8.10e-18

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 75.36  E-value: 8.10e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905   1 FVFILTYLHILRGLNYSFTYLP--LSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LINWVCG 74
Cdd:pfam13631   2 IFIAAIYVHMLRIFFTGAYRKPreLNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVvgtwLVWLLFG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  75 GFIINDPTLKRFFVLHF-IFPFVALAIVFIHIFFLHIQGSTNPLGYDTPL-KIPFYPNLLTLGVKGFNYVLVLFLFQSLF 152
Cdd:pfam13631  82 GPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVvGVPFWPVFAVKMLLFFLITVALLIGLAQI 161


                  ....*
gi 1569122905 153 GIAPL 157
Cdd:pfam13631 162 NPIWL 166
PRK03735 PRK03735
cytochrome b6; Provisional
 23-117 2.37e-09

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 53.95  E-value: 2.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  23 LSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPGLINWV----CGGFIINDPTLKRFFVLH-FIFPFVA 97
Cdd:PRK03735  124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIktllRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                          90       100
                  ....*....|....*....|
gi 1569122905  98 LAIVFIHIFFLHIQGSTNPL 117
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 23-117 9.98e-08

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 49.33  E-value: 9.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1569122905  23 LSWISGLVIFLIFIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LINWVCGGFIINDPTLKRFFVLH-FIFPFVA 97
Cdd:CHL00070  116 LTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVigspLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                          90       100
                  ....*....|....*....|
gi 1569122905  98 LAIVFIHIFFLHIQGSTNPL 117
Cdd:CHL00070  196 AVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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