NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|156446259|gb|ABU63392|]
View 

NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepilemur ruficaudatus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-62 1.20e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00107:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 64.57  E-value: 1.20e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446259  1 MPSIFTNVTLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 1.20e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 64.57  E-value: 1.20e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446259  1 MPSIFTNVTLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 1.20e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 64.57  E-value: 1.20e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446259  1 MPSIFTNVTLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 9-62 6.57e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 44.57  E-value: 6.57e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 156446259  9 TLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00126  9 SSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPML 62
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-62 2.13e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 43.30  E-value: 2.13e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446259  1 MPSIFTNVTLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPII 62
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 11-62 1.72e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 35.73  E-value: 1.72e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 156446259 11 AFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00067 11 AFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMF 62
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 9-62 3.77e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 34.92  E-value: 3.77e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 156446259  9 TLAFTMALMGMLVFRSHLMSSLLCLEGMMLSMFILSTLFTMNLHFTVSFIMPIL 62
Cdd:MTH00181  6 ISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLI 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH