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Conserved domains on  [gi|156446244|gb|ABU63382|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepilemur otto]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-61 6.32e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00107:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 62.64  E-value: 6.32e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156446244  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPI 61
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-61 6.32e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 62.64  E-value: 6.32e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156446244  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPI 61
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-61 6.32e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 62.64  E-value: 6.32e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156446244  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPI 61
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 11-61 1.13e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 41.49  E-value: 1.13e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 156446244 11 AFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00126 11 AFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPM 61
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-61 6.43e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 39.44  E-value: 6.43e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156446244  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPI 61
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 8-61 2.42e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 35.35  E-value: 2.42e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 156446244  8 IILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00067  8 FYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPM 61
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 9-61 9.57e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 33.76  E-value: 9.57e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 156446244  9 ILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPM 61
Cdd:MTH00181  6 ISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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