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Conserved domains on  [gi|156446229|gb|ABU63372|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepilemur edwardsi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-62 2.19e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00107:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 63.80  E-value: 2.19e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446229  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 2.19e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 63.80  E-value: 2.19e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446229  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 2.19e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 63.80  E-value: 2.19e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446229  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 11-42 1.19e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 41.49  E-value: 1.19e-06
                        10        20        30
                ....*....|....*....|....*....|..
gi 156446229 11 AFTIALTGMLVFRSHLMSSLLCLEGMMLSMFI 42
Cdd:MTH00126 11 AFILGLMGLAFHRTHLLSALLCLEGMMLSLFI 42
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-62 3.48e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 40.21  E-value: 3.48e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446229  1 MPSISTNIILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPII 62
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 8-62 3.79e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 34.96  E-value: 3.79e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 156446229  8 IILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00067  8 FYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMF 62
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 9-62 1.52e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 33.38  E-value: 1.52e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 156446229  9 ILAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILLIMNMHYTVSFIMPIL 62
Cdd:MTH00181  6 ISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLI 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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